BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00231.1
Length=1760
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490543 jgi|Araly1|490543|fgenesh2_kg.6__3677__AT4G00231.1 2143 0.0
Ahg943735 jgi|Araly1|943735|scaffold_604279.1 195 1e-48
> Ahg490543 jgi|Araly1|490543|fgenesh2_kg.6__3677__AT4G00231.1
Length=1453
Score = 2143 bits (1160), Expect = 0.0
Identities = 1352/1446 (93%), Gaps = 7/1446 (0%)
Strand=Plus/Plus
Query 23 GTCGTCAATGGAAGCTTCTCTACCGGAAGAGGTGCTTCAGCCGCTTCTACATGCTTCAGA 82
||| |||||||||||||||||||| |||||||||||||||||||| |||||||| || ||
Sbjct 1 GTCATCAATGGAAGCTTCTCTACCCGAAGAGGTGCTTCAGCCGCTGCTACATGCGTCGGA 60
Query 83 TTTATCATACTCTCTAGAAGATTGCTTGAAATTTCTTCTAGAGTCTTCCAAGACCGATTC 142
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 61 TTTATCATACTCTCTAGAAGGTTGCTTGAAGTTTCTTCTAGAGTCTTCCAAGACCGATTC 120
Query 143 AGGTCGTTCCGATCTCGCTTCCAAGTCTATACTTCCGTCGATCCTCCGTCTTCTTCAGCT 202
||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 121 AGGCCGTTCCGATCTCGCTTCCAAGTGTATCCTTCCGTCGATCCTCCGTCTTCTTCAGCT 180
Query 203 TCTTCCTTACCCATCTTCCCGCCATTATCTGAATCTCTCTCTGAAGGTCCTTCGAAACCT 262
|||||||||||||||||||||||||||||| |||||||||||||| ||||| || |||||
Sbjct 181 TCTTCCTTACCCATCTTCCCGCCATTATCTAAATCTCTCTCTGAAAGTCCTCCGCAACCT 240
Query 263 CTGCGCAGGTGAGGTTTCGAATCAGAACTCTTTCGTCGATCATGACGGCTCTGCTATCGT 322
||||| || |||||||||||||||||||||||||||||||| ||||| |||| ||||||
Sbjct 241 ATGCGCCGGCGAGGTTTCGAATCAGAACTCTTTCGTCGATCACGACGGTTCTGTTATCGT 300
Query 323 CTCCGACTTGCTTGATTCCGCCATTGCGGATTTCGAGACAGTTAGGTTCGGATTACAGGT 382
|||||| |||||||||||||||||||||||||| || || |||||||||||||| |||||
Sbjct 301 CTCCGAGTTGCTTGATTCCGCCATTGCGGATTTTGAAACTGTTAGGTTCGGATTGCAGGT 360
Query 383 TCTAGCGAACGTTGTATTGTTCGGAGAGAAACGTCAGAGAGATGTGTGGCTCCGATTTTA 442
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 361 TCTAGCGAACGTTGTATTGTTCGGAGAGAAACGTCAGAGAGATGTGTGGCTCCGCTTTTT 420
Query 443 CCCGGAGAGGTTCTTATCAATCGCTAAGATTAGGAAACGTGAAACATTTGATCCTCTGTG 502
||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||
Sbjct 421 CCCGGAGAGGTTCTTATCAATCGCTAAGATTAGGAGGCGTGAAACCTGTGATCCTCTGTG 480
Query 503 TATGATTTTGTATACTTGCGTTGATGGAAGCTCAGAGATTGCTTCAGAGCTTTGTAGCTG 562
||||||||||||||| ||| ||||||||||||||||||||||||||| |||||| ||| |
Sbjct 481 TATGATTTTGTATACGTGCTTTGATGGAAGCTCAGAGATTGCTTCAGCGCTTTGCAGCAG 540
Query 563 TC-AAGGGCTCACCATCATCGCTGAAACTCTACGGACTTCCTCTTCCGTTGGGTCTGTGG 621
| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 541 -CGAAGGGCTCACCATCATCGCTGAAACTCTACGGACTTCATCTTCCGTTGGGTCTGTGG 599
Query 622 AGGATTATTGGCTCAAGTTACTGGTTTCGAGAATCTGTGTTGAAGA-TGGTTACTTCCTC 680
|||||||||||||||| ||||||||||||||||||||||||||||| | |||||||| |
Sbjct 600 AGGATTATTGGCTCAAATTACTGGTTTCGAGAATCTGTGTTGAAGACT-ATTACTTCCCC 658
Query 681 AAGCTCTTCTCTAAATTATACGAAGATGCTGAAAATGAGATATTTTCATCAGAGCAAGCC 740
||||||||||| || |||||| ||| |||||||||||||| |||| ||||||||||||||
Sbjct 659 AAGCTCTTCTCCAAGTTATACAAAGTTGCTGAAAATGAGAAATTTACATCAGAGCAAGCC 718
Query 741 TTTCTTGTGAGGATGGTGTCTGATATTGCTAATGAGCGGATAGGAAAAGTGTCAATCCCC 800
|||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 719 TTTCTTCTGAGGATGGTGTCTGATATTGCAAATGAGCGGATAGGAAAAGTGGCAATCCCC 778
Query 801 AAGGATACAGCTTGTTCGATTCTCGGATTGTTTAGGCAATCAGTTGATGTTTTTGATTTT 860
||||||||||||| ||| ||||||||||| |||| |||||||||||| ||||| ||||||
Sbjct 779 AAGGATACAGCTTCTTCAATTCTCGGATTATTTAAGCAATCAGTTGACGTTTTCGATTTT 838
Query 861 GTTTCGGGTGAAAGATCGGAGCTTCCAACGGGTTCAACTATAGTAGATGTGATGGGCTAC 920
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 839 GTTTCGGGTGAAAGATCCGAGCTTCCAACGGGTTCAACTATAGTAGACGTGATGGGCTAC 898
Query 921 TCTCTGGTGATAATAAGGGATGCTTGTGCTGGAGGACGTCTTGAAGAACTCAAGGAGGAC 980
|||||||||||||||||||||||||| ||||||||| | |||||||||||||| |||||
Sbjct 899 TCTCTGGTGATAATAAGGGATGCTTGCGCTGGAGGAAGCCTTGAAGAACTCAACAAGGAC 958
Query 981 AACAAGGATTCAGGTGATACTGTTGAATTGCTCTTGTCCTCTGGACTAATAGAACTTCTC 1040
||||||||||| |||||||||||||| |||||||||||||||||||||||||| || |||
Sbjct 959 AACAAGGATTCCGGTGATACTGTTGAGTTGCTCTTGTCCTCTGGACTAATAGAGCTCCTC 1018
Query 1041 CTTGATCTGCTTAGTAAACTTGATCCTCCAACAACAATAAAGAAGGCTTTAAACCAGAGT 1100
|||||||||||| | |||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 1019 CTTGATCTGCTTCGCAAACTTGATCCTCCAACAACTATAAAGAAGGCTCTAAACCAGAGT 1078
Query 1101 CCTAGTTCTTCTTCTTCTTCATTAAAGCCGTGTCCTTACAGAGGATTCAGGAGAGATATT 1160
|||| |||||||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct 1079 CCTA---CTTCTTCTTCTTCATTTAAGCCCTGCCCTTACAGAGGATTCAGGAGAGATATT 1135
Query 1161 GTGTCGGTGATTGGGAACTGCGCGTACAGAAGAAAAGAGGTACAAGATGAGATCAGGGAG 1220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 GTGTCGGTGATTGGGAACTGCGCGTACAGAAGAAAAGAGGTACAAGATGAGATCAGGGAG 1195
Query 1221 AGAGATGGGCTCTTTTTAATGCTGCAGCAGTGTGTGACCGATGATGAGAACCCGTTCTTG 1280
|| ||||||||| | ||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 1196 AGTGATGGGCTCGTCCTAATGTTGCAGCAGTGTGTGACCGATGATGAGAACCCATTCTTG 1255
Query 1281 AGAGAATGGGGCTTGTGGTGTATAAGAAATTTACTGGAAGGGAACCCTGAAAACCAGGAA 1340
||||||||||||||||||||| | |||||||| |||||||||||||| ||||||||||||
Sbjct 1256 AGAGAATGGGGCTTGTGGTGTGTGAGAAATTTGCTGGAAGGGAACCCAGAAAACCAGGAA 1315
Query 1341 GTAGTGGCTGAGTTGGAGATTAAAGGCTCTGTGGATGTGCCTCAACTCCGTGAAATTGGT 1400
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1316 GTGGTGGCTGAGTTGGAGATTAAAGGCTCTGTTGATGTGCCTCAACTCCGTGAAATTGGT 1375
Query 1401 CTCAGGGTTGAAATTGATCCTAAAACAGCCAGGCCAAAGCTTGTCAATGACACCTGAAGC 1460
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1376 CTCAGAGTTGAAATTGATCCTAAAACAGCCAGGCCAAAGCTTGTCAACGACACCTGAAGC 1435
Query 1461 TTCATT 1466
||||||
Sbjct 1436 TTCATT 1441
> Ahg943735 jgi|Araly1|943735|scaffold_604279.1
Length=1564
Score = 195 bits (105), Expect = 1e-48
Identities = 124/133 (93%), Gaps = 2/133 (2%)
Strand=Plus/Plus
Query 1474 GGGAAAAGAGGAGCTATACAATACACAACAAGAGGTCCTTCTTGAGGCGGTGAAGATCAT 1533
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1433 GGGAAAAGAGGAGCTATACAATACACAACAAGAGGTCCTTCTTGAGGTGGTTAAGATCAT 1492
Query 1534 AAAGAAGCACGGTGTGTCGCTAGGTACCACCTGGGACAATTCTACA-TTGTGAGTGATCA 1592
|||||||||||||| |||||| |||||||||||||||||| |||| || ||||||||||
Sbjct 1493 AAAGAAGCACGGTGCGTCGCTGGGTACCACCTGGGACAATCCTACGGTT-TGAGTGATCA 1551
Query 1593 TTTTGTAGAGACA 1605
||| |||||||||
Sbjct 1552 TTTGGTAGAGACA 1564
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66048484830
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5