BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G00232.1 Length=465 Score E Sequences producing significant alignments: (Bits) Value Ahg947538 jgi|Araly1|947538|scaffold_703767.1 320 5e-87 > Ahg947538 jgi|Araly1|947538|scaffold_703767.1 Length=790 Score = 320 bits (173), Expect = 5e-87 Identities = 320/390 (82%), Gaps = 13/390 (3%) Strand=Plus/Plus Query 76 AAGAACGTGAGTGCCAAACAATCAAAGAAAGATGCAAAAAAGGAGAATTCTC-AAATGTT 134 ||| ||||||||||||| | ||| ||||||||||| || |||| || ||||| ||| ||| Sbjct 133 AAG-ACGTGAGTGCCAAGCGATCGAAGAAAGATGCGAAGAAGGCGAGTTCTCTAAA-GTT 190 Query 135 AAAGTGGAGTTCGAAAGATGAGGTCCTTGTGCTACAAGGTATGTTGGATTTCAAATCTGT 194 |||||||| | |||| ||| ||| |||||||||||||||| ||||||||| || | Sbjct 191 GGAGTGGAGTGAGGAAGAAGAGATCCGTGTGCTACAAGGTATGACAGATTTCAAAGCTAT 250 Query 195 AAC-AGGTAAGAATCCTGTTGATGATATAAACGGAGCATACGAATTCGTCGTCCATGAAT 253 ||| ||| ||||||||| |||||||||| |||||||| ||||||||| | |||| |||| Sbjct 251 AACAAGG-AAGAATCCTTTTGATGATATGAACGGAGCTTACGAATTC--C-TCCAGGAAT 306 Query 254 ACATAAGCACTGTTATTGACGAAGACTTCATAGAGAAGATGAAGAGTTTGAAGAAGAAAT 313 | |||||| || | || | | |||||| |||||||||||||||||||||||||||| | Sbjct 307 ATATAAGCGTTGATGTT-A--ACGACTTCGTAGAGAAGATGAAGAGTTTGAAGAAGAAGT 363 Query 314 TAAAGAAAAAACAGAGGATTTACGATAAAGATCCGTCTTCTTCGGAACCTCTATA-CCAG 372 ||| | || || |||| ||| |||||| |||||||| |||||||||| | ||| Sbjct 364 TAATGGGTCAAGTGAAGATTAACGCTAAAGAACCGTCTTCCTCGGAACCTC-ACGGCCAC 422 Query 373 AAAAGTTCCGAGTGGTTGAAAATGATTTGGGGTTATGATGTGGAATCTGCCCTTGAGAAA 432 | |||||| |||| ||||| | |||||||||| | ||||||||||||||| |||||||| Sbjct 423 ACAAGTTCTGAGTTGTTGAGACTGATTTGGGGATGTGATGTGGAATCTGCTGTTGAGAAA 482 Query 433 CCAAGGAAGAGTAAGCGGATTATAAAGCTT 462 ||||||||||||||| |||||||||||||| Sbjct 483 CCAAGGAAGAGTAAGAGGATTATAAAGCTT 512 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 16826614749 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5