BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G00232.1

Length=465
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg947538 jgi|Araly1|947538|scaffold_703767.1                        320    5e-87


> Ahg947538 jgi|Araly1|947538|scaffold_703767.1
Length=790

 Score =  320 bits (173),  Expect = 5e-87
 Identities = 320/390 (82%), Gaps = 13/390 (3%)
 Strand=Plus/Plus

Query  76   AAGAACGTGAGTGCCAAACAATCAAAGAAAGATGCAAAAAAGGAGAATTCTC-AAATGTT  134
            ||| ||||||||||||| | ||| ||||||||||| || |||| || ||||| ||| |||
Sbjct  133  AAG-ACGTGAGTGCCAAGCGATCGAAGAAAGATGCGAAGAAGGCGAGTTCTCTAAA-GTT  190

Query  135  AAAGTGGAGTTCGAAAGATGAGGTCCTTGTGCTACAAGGTATGTTGGATTTCAAATCTGT  194
              ||||||||  | |||| ||| ||| ||||||||||||||||   ||||||||| || |
Sbjct  191  GGAGTGGAGTGAGGAAGAAGAGATCCGTGTGCTACAAGGTATGACAGATTTCAAAGCTAT  250

Query  195  AAC-AGGTAAGAATCCTGTTGATGATATAAACGGAGCATACGAATTCGTCGTCCATGAAT  253
            ||| ||| ||||||||| |||||||||| |||||||| |||||||||  | |||| ||||
Sbjct  251  AACAAGG-AAGAATCCTTTTGATGATATGAACGGAGCTTACGAATTC--C-TCCAGGAAT  306

Query  254  ACATAAGCACTGTTATTGACGAAGACTTCATAGAGAAGATGAAGAGTTTGAAGAAGAAAT  313
            | ||||||  || | || |  | |||||| |||||||||||||||||||||||||||| |
Sbjct  307  ATATAAGCGTTGATGTT-A--ACGACTTCGTAGAGAAGATGAAGAGTTTGAAGAAGAAGT  363

Query  314  TAAAGAAAAAACAGAGGATTTACGATAAAGATCCGTCTTCTTCGGAACCTCTATA-CCAG  372
            ||| |    ||  || |||| ||| |||||| |||||||| |||||||||| |   ||| 
Sbjct  364  TAATGGGTCAAGTGAAGATTAACGCTAAAGAACCGTCTTCCTCGGAACCTC-ACGGCCAC  422

Query  373  AAAAGTTCCGAGTGGTTGAAAATGATTTGGGGTTATGATGTGGAATCTGCCCTTGAGAAA  432
            | |||||| |||| ||||| | |||||||||| | |||||||||||||||  ||||||||
Sbjct  423  ACAAGTTCTGAGTTGTTGAGACTGATTTGGGGATGTGATGTGGAATCTGCTGTTGAGAAA  482

Query  433  CCAAGGAAGAGTAAGCGGATTATAAAGCTT  462
            ||||||||||||||| ||||||||||||||
Sbjct  483  CCAAGGAAGAGTAAGAGGATTATAAAGCTT  512



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16826614749


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5