BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00260.1
Length=1587
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932560 jgi|Araly1|932560|scaffold_400548.1 1062 0.0
Ahg932575 jgi|Araly1|932575|scaffold_400563.1 1035 0.0
Ahg481325 jgi|Araly1|481325|fgenesh2_kg.4__385__AT2G24650.1 765 0.0
Ahg932837 jgi|Araly1|932837|scaffold_400825.1 71.3 2e-11
Ahg932846 jgi|Araly1|932846|scaffold_400834.1 56.5 6e-07
> Ahg932560 jgi|Araly1|932560|scaffold_400548.1
Length=1828
Score = 1062 bits (575), Expect = 0.0
Identities = 972/1156 (84%), Gaps = 57/1156 (5%)
Strand=Plus/Plus
Query 10 CAACATTTCTTCAAGCCTCTTCTTCCTGGCTTCCACGCCTC-CTTGACAATTCCTGTAGC 68
|||||||||||||||||||||||||| || |||||| || ||||||||||||||| ||
Sbjct 219 CAACATTTCTTCAAGCCTCTTCTTCCCGGATTCCAC-AGTCACTTGACAATTCCTGTGGC 277
Query 69 CTTCTTCTTGAAGTATATAGAAGGAAGATATGAGCAGAAGACGGCGAAGCTGAGATCAGA 128
|||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 278 TTTCTTCTTGAAGAATATAGAAGGAAGACATGAGCAGAAGACGGCGGAGCTGAGATCAGA 337
Query 129 CGCGTCAAAGAGAACTTGGGAAGTGAAGATAGATGGCCAGAGACTCACCGACGGTTGGAA 188
||||||||||| |||||||||||||||||| ||||| ||||||||||| |||||||||||
Sbjct 338 CGCGTCAAAGATAACTTGGGAAGTGAAGATTGATGGACAGAGACTCACTGACGGTTGGAA 397
Query 189 AGAGTTTGCTGTCTCACATGATCTTCGAATCGGTGACATTGTTGT-TTTCAGACAAGAGA 247
|||||||||| |||| |||||||||||||||||||||||||| || ||| ||||||||||
Sbjct 398 AGAGTTTGCTCTCTCGCATGATCTTCGAATCGGTGACATTGTGGTGTTT-AGACAAGAGA 456
Query 248 GTGACT-TG-GCTTTCCATGTAACACTGTTGGGACCTAGTTGTTGTGGGATTCAATATGG 305
| || | || | |||||| || ||| ||||||||||||||||||||| ||||||||||||
Sbjct 457 GAGA-TATGTG-TTTCCACGTTACAATGTTGGGACCTAGTTGTTGTGAGATTCAATATGG 514
Query 306 TTCGTGTTCAGTCGAA-AAGAACAACCTCGGTGACGAGAAAAAGAAAGTGAAGGAGAATC 364
|||||||| || | || |||||||||||||| || || | |||| |||| ||||||
Sbjct 515 TTCGTGTTTAGAC-AACAAGAACAACCTCGG-GA--AG--ATTCAAAG-GAAGAAGAATC 567
Query 365 CAA-ATGGAGAAGCAGAGTCTTCTTCACGAGATCCCTCTTGTTTTGTGGCTAATGTTGCG 423
||| | ||||| |||||||||| |||| |||||| |||||||||||||||||||| ||
Sbjct 568 CAAGA-AGAGAAACAGAGTCTTCGTCACTAGATCCTTCTTGTTTTGTGGCTAATGTCACG 626
Query 424 CCTTCGAGTCTACGTTATGACTTGA-TGAGAT-TTCCAAGGGGTTTTGTGAGGGATAATG 481
|||||||||||| ||||| || ||| || ||||||| ||||||||||||| ||||
Sbjct 627 GTTTCGAGTCTACGCGATGAC-AGACTGA-ATCTTCCAAGAAGTTTTGTGAGGGAAAATG 684
Query 482 GTGTAG--TC-GGATCTGGAGAGATTGTTCTGATGAATGAAAAGGGCAGATCATGGAATT 538
|| ||| | ||| |||||||||||||||||||||||||||||||||| ||||| | |
Sbjct 685 GTCTAGACACAAGATGTGGAGAGATTGTTCTGATGAATGAAAAGGGCAGAACATGG-ACT 743
Query 539 TTA-ACTTGAGACAAAAGC-CATCAAACGGAAC-AGTTTATGTTAGAGGAGGGTGGGTG- 594
||| | |||| | ||| | |||| || |||| | ||| | | | ||| | || |
Sbjct 744 TTAGATTTGAAAGGAAA-CAAATCATACAGAACTA-CTTACATCAAACAAGGAT-GGAGA 800
Query 595 AGTTTTTGTGATGCCAATGGGCTTAAAGCTGG-AGATAACTACACTTTCAAACTGAT-CA 652
||||| ||| |||||||||| |||| |||||| || || || |||||| |||||||| ||
Sbjct 801 AGTTTCTGTCATGCCAATGGACTTAGAGCTGGAAG-TATCTTCACTTTTAAACTGATCCA 859
Query 653 AAAGAGCAGGAACTCTTGTTCTACGTTTGTTACCCAATGAGCCAAAAGAGGAAGCTAATG 712
||| || | ||||| ||||||||||||| ||||| |||||| | || |||||||||
Sbjct 860 AAA-AGGAAAAACTCCGGTTCTACGTTTGTCCCCCAAAGAGCCAGAGGAACAAGCTAATG 918
Query 713 AAGTGTCTC-TTCCCGAAGAACCGGAAAGCGATGCAGA-GCGCAACCTTGAAAAGATTCA 770
||||||| | ||||| ||||| ||||||||||| ||| | |||||||| ||||||||
Sbjct 919 AAGTGTCCCTTTCCC-CAGAACTGGAAAGCGATGAAGATAC-CAACCTTGGGAAGATTCA 976
Query 771 AAGGAAGG-AG-AAAGTGAAGAAGAATGTAACAAGAGAGGCAGAGTCTTCTTCACAAGAT 828
|||| ||| || |||| |||||||||| || ||||| |||||||||||||| ||||
Sbjct 977 AAGG-AGGAAGAAAAG-GAAGAAGAATCCAAGTAGAGATATAGAGTCTTCTTCACTAGAT 1034
Query 829 CCCTCTTGTTTTGTGGCTAATGTCT-CCCCTTCGAGTCTACGCTATGACACACTGTATCT 887
|| ||||||||||||||| || | | | | |||||||||||| ||||||| |||||||||
Sbjct 1035 CCATCTTGTTTTGTGGCTCATAT-TACGCGTTCGAGTCTACGTTATGACATACTGTATCT 1093
Query 888 TCCAAAGCGTTTTATGAGGGAAAATGGTGTAGACAAAAGATGTGGAGAGATGATTCTGAT 947
|||||||||||||||||||||||||||| |||| | ||||||||||||||||||| ||||
Sbjct 1094 TCCAAAGCGTTTTATGAGGGAAAATGGTCTAGATACAAGATGTGGAGAGATGATTTTGAT 1153
Query 948 TAATGAAAAGGGAAAATCATGGACTTTAGATTTGAAA-GTAAAGAAATCATCCGGAACTT 1006
|| |||||||| | ||||||| |||||||||||||| | |||||| |||| |||||||
Sbjct 1154 GAACGAAAAGGGCAGATCATGGGCTTTAGATTTGAAACG-AAAGAACTCATGCGGAACTA 1212
Query 1007 CTCT-CATCAAACGAGGATGGAGAAGTTTCTGTAGTGCCAATGGACTAAGAGCTGGAAGT 1065
|| | |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1213 CT-TACATCAAACGAGGATGGAGAAGTTTCTGTCGTGCCAATGGACTTAGAGCTGGAAGT 1271
Query 1066 ATC-ATAACTCTCAAACTGATAAAGAAAAGA--GCAACTCTTGTTCTACGTTTGATCCCC 1122
|| ||| || |||||||||| | ||| || | |||||| |||||||||||| |||||
Sbjct 1272 TTCTATA-CTTTCAAACTGATCCA-AAATGAAAG-AACTCTGGTTCTACGTTTGGTCCCC 1328
Query 1123 AACGAGCCAGAAGAAG 1138
|| |||||||||||||
Sbjct 1329 AAAGAGCCAGAAGAAG 1344
> Ahg932575 jgi|Araly1|932575|scaffold_400563.1
Length=1936
Score = 1035 bits (560), Expect = 0.0
Identities = 967/1154 (84%), Gaps = 65/1154 (6%)
Strand=Plus/Plus
Query 10 CAACATTTCTTCAAGCCTCTTCTTCCTGGCTTCCACGCCTC-CTTGACAATTCCTGTAGC 68
|||||||||||||||||||||||||| || |||||| || ||||||||||||||| ||
Sbjct 393 CAACATTTCTTCAAGCCTCTTCTTCCCGGATTCCAC-AGTCACTTGACAATTCCTGTGGC 451
Query 69 CTTCTTCTTGAAGTATATAGAAGGAAGATATGAGCAGAAGACGGCGAAGCTGAGATCAGA 128
|||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 452 TTTCTTCTTGAAGAATATAGAAGGAAGACATGAGCAGAAGACGGCGGAGCTGAGATCAGA 511
Query 129 CGCGTCAAAGAGAACTTGGGAAGTGAAGATAGATGGCCAGAGACTCACCGACGGTTGGAA 188
||||||||||| |||||||||||||||||| ||||| ||||||||||| |||||||||||
Sbjct 512 CGCGTCAAAGATAACTTGGGAAGTGAAGATTGATGGACAGAGACTCACTGACGGTTGGAA 571
Query 189 AGAGTTTGCTGTCTCACATGATCTTCGAATCGGTGACATTGTTGT-TTTCAGACAAGAGA 247
|||||||||| |||| |||||||||||||||||||||||||| || ||| ||||||||||
Sbjct 572 AGAGTTTGCTCTCTCGCATGATCTTCGAATCGGTGACATTGTGGTGTTT-AGACAAGAGA 630
Query 248 GTGACT-TG-GCTTTCCATGTAACACTGTTGGGACCTAGTTGTTGTGGGATTCAATATGG 305
| || | || | |||||| || ||| ||||||||||||||||||||| ||||||||||||
Sbjct 631 GAGA-TATGTG-TTTCCACGTTACAATGTTGGGACCTAGTTGTTGTGAGATTCAATATGG 688
Query 306 TTCGTGTTCAGTCGAA-AAGAACAACCTCGGTGACGAGAAAAAGAAAGTGAAGGAGAATC 364
|||||||| || | || |||||||||||||| || || | |||| |||| ||||||
Sbjct 689 TTCGTGTTTAGAC-AACAAGAACAACCTCGG-GA--AG--ATTCAAAG-GAAGAAGAATC 741
Query 365 CAA-ATGGAGAAGCAGAGTCTTCTTCACGAGATCCCTCTTGTTTTGTGGCTAATGTTGCG 423
||| | ||||| |||||||||| |||| |||||| |||||||||||||||||||| ||
Sbjct 742 CAAGA-AGAGAAACAGAGTCTTCGTCACTAGATCCTTCTTGTTTTGTGGCTAATGTCACG 800
Query 424 CCTTCGAGTCTACGTTATGACTTGA-TGAGAT-TTCCAAGGGGTTTTGTGAGGGATAATG 481
|||||||||||| ||||| || ||| || ||||||| ||||||||||||| ||||
Sbjct 801 GTTTCGAGTCTACGCGATGAC-AGACTGA-ATCTTCCAAGAAGTTTTGTGAGGGAAAATG 858
Query 482 GTGTAGTC---GGATCTGGAGAGATTGTTCTGATGAATGAAAAGGGCAGATCATGGAATT 538
|| ||| | ||| || ||||||||||||||||||||||||||||||| ||||| | |
Sbjct 859 GTCTAGACAAAAGATGTGTAGAGATTGTTCTGATGAATGAAAAGGGCAGAACATGG-ACT 917
Query 539 TTA-ACTTGAGACAAAAGC-CATCAAACGGAAC-AGTTTATGTTAGAGGAGGGTGGGTG- 594
||| | |||| | ||| | |||| ||||||| | ||| | | | |||| | || |
Sbjct 918 TTAGATTTGAAAGGAAA-CAAATCATACGGAACTA-CTTACATCAAACGAGGAT-GGAGA 974
Query 595 AGTTTTTGTGATGCCAATGGGCTTAAAGCTGG-AGATAACTACACTTTCAAACTGATCAA 653
||||| || |||||||||| |||| |||||| || || || ||||||||||||||||||
Sbjct 975 AGTTTCTGCCATGCCAATGGACTTAGAGCTGGAAG-TATCTTCACTTTCAAACTGATCAA 1033
Query 654 AAGAGCAGGAACTCTTGTTCTACGTTTGTTAC-CCAATGAGCCAAAAGAGGAAGCTAATG 712
|| || | ||||| |||||||||||||| | |||| |||||| |||| |||||||||
Sbjct 1034 AAAAGGAAAAACTCCGGTTCTACGTTTGTT-CTCCAAAGAGCCAGAAGAACAAGCTAATG 1092
Query 713 AAGTGTCTC-TTC-CCGAAGAACCGGAAAGCGATGCAGAGCGCAACCTTGAAAAGATTCA 770
||| ||||| ||| || ||||| ||||||| ||| ||| ||||||||| ||||||||
Sbjct 1093 AAGCGTCTCTTTCTCC--AGAACTGGAAAGCAATGAAGATAGCAACCTTGGGAAGATTCA 1150
Query 771 AAGGAAGGAGAAAGTGAAGAAGAATGTAACAAGAGAGGCAGAGTCTTCTTCACAAGATCC 830
|||| | | | || ||| || || ||||| ||||||||||||||| ||||||
Sbjct 1151 AAGG-A-G-G-AA--GAA-TCCAA-GT----AGAGAAACAGAGTCTTCTTCACTAGATCC 1198
Query 831 CTCTTGTTTTGTGGCTAATGTCT-CCCCTTCGAGTCTACGCTATGACACACTGTATCTTC 889
||||||||||||||||||| | | | | |||||||||||| ||||||| |||||||||||
Sbjct 1199 CTCTTGTTTTGTGGCTAATAT-TACGCGTTCGAGTCTACGTTATGACATACTGTATCTTC 1257
Query 890 CAAAGCGTTTTATGAGGGAAAATGGTGTAGACAAAAGATGTGGAGAGATGATTCTGATTA 949
|||||||||||||||||| ||||||| |||||| ||||||||||||||||||| |||| |
Sbjct 1258 CAAAGCGTTTTATGAGGGCAAATGGTCTAGACACAAGATGTGGAGAGATGATTTTGATGA 1317
Query 950 ATGAAAAGGGAAAATCATGGACTTTAGATTTGAAA-GTAAAGAAATCATCCGGAACTTCT 1008
| |||||||| | ||||||| |||||||||||||| | |||||| |||| ||||||| ||
Sbjct 1318 ACGAAAAGGGCAGATCATGGGCTTTAGATTTGAAACG-AAAGAACTCATGCGGAACTACT 1376
Query 1009 CT-CATCAAACGAGGATGGAGAAGTTTCTGTAGTGCCAATGGACTAAGAGCTGGAAGTAT 1067
| |||||||||||||||||||||||||||| ||| ||||||||| |||||||||||| |
Sbjct 1377 -TACATCAAACGAGGATGGAGAAGTTTCTGTCGTGTCAATGGACTTAGAGCTGGAAGTTT 1435
Query 1068 C-ATAACTCTCAAACTGATAAAGAAAAGA--GCAACTCTTGTTCTACGTTTGATCCCCAA 1124
| ||| || |||||||||| | ||| || | |||||| |||||||||||| |||||||
Sbjct 1436 CTATA-CTTTCAAACTGATCCA-AAATGAAAG-AACTCTGGTTCTACGTTTGGTCCCCAA 1492
Query 1125 CGAGCCAGAAGAAG 1138
|||||||||||||
Sbjct 1493 AGAGCCAGAAGAAG 1506
> Ahg481325 jgi|Araly1|481325|fgenesh2_kg.4__385__AT2G24650.1
Length=4830
Score = 765 bits (414), Expect = 0.0
Identities = 571/644 (89%), Gaps = 22/644 (3%)
Strand=Plus/Plus
Query 54 GACAATTCCTGTAGCCTTCTTCTTGAAGTATATAGAAGGAAGATATGAGCAGAAGACGGC 113
|||||||||||||| ||||||||||||| |||||||||||||| |||| || ||||||||
Sbjct 3414 GACAATTCCTGTAGTCTTCTTCTTGAAGCATATAGAAGGAAGAGATGACCAAAAGACGGC 3473
Query 114 GA-AGCTGAGATCAGACGCGTCAAAGAGAACTTGGGAAGTGAAGATAGATGGCCAGAGAC 172
| |||| ||||| |||||||| |||| ||||||| |||||||||||||||| |||||||
Sbjct 3474 -AGAGCTAAGATCCGACGCGTCGAAGATAACTTGGAAAGTGAAGATAGATGGACAGAGAC 3532
Query 173 TCACCGACGGTTGGAAAGAGTTTGCTGTCTCACATGATCTTCGAATCGGTGACATTGTTG 232
|||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 3533 TCACTGACGGTTGGAAAGAGTTTGCTTTAGCACATGATCTTCGAATCGGTGACATTGTCA 3592
Query 233 TTTTCAGACAAGAGAGTGACTTGGCTTTCCATGTAACACTGTTGGGACCTAGTTGTTGTG 292
||||||||||||||||||||||| |||||||||| ||||| || ||||||||||||||||
Sbjct 3593 TTTTCAGACAAGAGAGTGACTTGTCTTTCCATGTGACACTATTAGGACCTAGTTGTTGTG 3652
Query 293 GGATTCAATATGGTTCGTGTTCAGTCGAAAAGAACAACCTCGGTGACGAGAAAAAGAAAG 352
|||||||||||||||||||| || |||| ||| ||| || | |||| ||| ||
Sbjct 3653 AGATTCAATATGGTTCGTGTTTAGACGAAGAGACCAA--TC--T--CGAG---AAG-AA- 3701
Query 353 TGAAGGAGAATCCAAATGGAGAAGCAGAGTCTTCTTCACGAGATCCCTCTTGTTTTGTGG 412
| | ||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||
Sbjct 3702 -G-A--AGAATCCAAATGGAGAAGCAGAGACTTCTTCACTAGATCGCTCTTGTTTTGTGG 3757
Query 413 CTAATGTTGCGCCTTCGAGTCTACGTTATGACTTGATGAGAT-TTCCAAGGGGTTTTGTG 471
|||| || ||||||||||||||| ||||||||| ||| || |||||||| |||||||
Sbjct 3758 CTAAAGTCGCGCCTTCGAGTCTAAGTTATGACTCAATG-CATCTTCCAAGGCCTTTTGTG 3816
Query 472 AGGGATAATGGTGTAGT--C-GGATCTGGAGAGATTGTTCTGATGAATGAAAAGGGCAGA 528
|| || ||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 3817 AGAGAAAATGGTGTAGTCACTGGATCTGGAGAGATTGTTCTGATGAATGAAAAGGGCAGA 3876
Query 529 TCATGGAATTTTAACTTGAGACAAAAGCCATCAAACGGAACAGTTTATGTTAGAGGAGGG 588
|||||||| || || |||||||||||||||||| |||||| |||||||||| |||||||
Sbjct 3877 TCATGGAAGTTAAAATTGAGACAAAAGCCATCATGCGGAACGGTTTATGTTAAAGGAGGG 3936
Query 589 TGGGTGAGTTTTTGTGATGCCAATGGGCTTAAAGCTGGAGATAACTACACTTTCAAACTG 648
|||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||
Sbjct 3937 TGGGTGAGTTTTTGTGATGCCAATGGACTTAGAGCTGGAGATATCTACACTTTCAAACTG 3996
Query 649 ATCAAAAGAGCAGGAACTCTTGTTCTACGTTTGTTACCCAATGA 692
||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 3997 ATCCAAAGAGGAGGAACTCTTGTTCTACGTTTGTTACCCAATGA 4040
Score = 464 bits (251), Expect = 8e-130
Identities = 380/437 (87%), Gaps = 29/437 (7%)
Strand=Plus/Plus
Query 804 AGAGGCAGAGTCTTCTTCACAAGATCCCTCTTGTTTTGTGGCTAATGTCTCCCCTTCGAG 863
|||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||
Sbjct 4041 AGAGGCAGAGTCTTCTTCACTAGATCCCTCTTGTTTTGTGGCTAATGTCGCGCCTTCGTC 4100
Query 864 TCTACGCTATGACACACTGTATCTTCCAAAGCGTTTTATGAGGGAAAATGGTGTAGACAA 923
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 4101 TCTACGCTATGACACACTGTATCTTCCAAGGCGTTTTATGAGGGAAAATGGTGTAGACAA 4160
Query 924 AAGATGTGGAGAGATGATTCTGATTAATGAAAAGGGAAAATCATGGACTTTAGATTTGAA 983
|||||||||| |||| ||| |||| || |||||| | |||||||||||||||||||| ||
Sbjct 4161 AAGATGTGGAAAGATTATTTTGATGAACGAAAAGAGCAAATCATGGACTTTAGATTTAAA 4220
Query 984 A-GTAAAGAAATCATCCGGAACTTCTCTCATCAAACGAGGATGGAGAAGTTTCTGT-AGT 1041
| | ||||||||||| |||||||||| | ||||||||||||||||||||||||||| | |
Sbjct 4221 ACG-AAAGAAATCATGCGGAACTTCTTTAATCAAACGAGGATGGAGAAGTTTCTGTCA-T 4278
Query 1042 GCCAATGGACTAAGAGCTGGAAGTATCATAAC-TCTCAAACTGATAAAGAAAAG-AGCAA 1099
||||||||||| ||||||||||||||||||| | ||||||||||||| ||||| || ||
Sbjct 4279 GCCAATGGACTTAGAGCTGGAAGTATCATAAAAT-TCAAACTGATAAA-AAAAGGAGGAA 4336
Query 1100 CTCTTGTTCTACGTTTGATCCCCAACGAGCCA---GAAGAAG-------CT-A-A---T- 1143
|||||||||||||||| || ||||||||||| ||||||| || | | |
Sbjct 4337 ATCTTGTTCTACGTTTGCTCACCAACGAGCCAAAAGAAGAAGAAGAGTGCTCAGAAGCTA 4396
Query 1144 --GAAGTAGTCTCTCTTTCGACAGAGCAAGAAAGCGATGAAGAGAGTATCCACGACGAGA 1201
||||||| |||||||||||||| ||||||||| |||||||||| |||| ||||||
Sbjct 4397 ATGAAGTAGAGTCTCTTTCGACAGATCAAGAAAGCAATGAAGAGAG---CCACAACGAGA 4453
Query 1202 AAATCTCAAGAAGAAAG 1218
|||||||||||||||||
Sbjct 4454 AAATCTCAAGAAGAAAG 4470
Score = 329 bits (178), Expect = 3e-89
Identities = 231/257 (90%), Gaps = 2/257 (1%)
Strand=Plus/Plus
Query 1320 GCGTCTTCCGGTTCCTTTCACGAGGATGAATGGTATCAATGAAGAAACTAAAATGACTCT 1379
||| |||||| | || ||||||||||||||||| ||||| ||||| ||||||||||||||
Sbjct 4572 GCGCCTTCCGATACCCTTCACGAGGATGAATGGCATCAACGAAGACACTAAAATGACTCT 4631
Query 1380 GTTGGATAAACATGGTGTGAAGTGGTTAACGACTCTGCGGTTCGAGGACGACAAAAGAAA 1439
|||||||||||||||| ||||||||||||| ||||||||||| | |||| ||||||| ||
Sbjct 4632 GTTGGATAAACATGGTATGAAGTGGTTAACCACTCTGCGGTTGGTGGACTACAAAAGTAA 4691
Query 1440 AAGACTACGAATGGTAGGAGGATGGCAAGGATTCATCCAAGCTAAC-GATGTGAAGGCAA 1498
|||| || |||||| |||||| |||||||||||||||||||||||| | |||||||||||
Sbjct 4692 AAGATTAAGAATGGCAGGAGGCTGGCAAGGATTCATCCAAGCTAACTG-TGTGAAGGCAA 4750
Query 1499 ACGAATCCATCATGTTGGAACTGATTTGGGAAGAAGAAACAAGTTGCGTCCTTAAGTTCT 1558
|||||||||||||||| || ||||||||||||||||| |||||||| |||| || ||||
Sbjct 4751 ACGAATCCATCATGTTAGAGCTGATTTGGGAAGAAGACACAAGTTGTATCCTGAAATTCT 4810
Query 1559 GCTCCAAGGTGAAGCTA 1575
|||||||||||||||||
Sbjct 4811 GCTCCAAGGTGAAGCTA 4827
Score = 78.7 bits (42), Expect = 1e-13
Identities = 61/70 (87%), Gaps = 2/70 (3%)
Strand=Plus/Plus
Query 1219 TCTTTACTATCCGAAAACCGATTTGTGACATTAACTCTAACACCTTATA-CAATCCAAAG 1277
|||| || |||||||||||||||||||||||||||||| |||||||| | || ||| | |
Sbjct 4504 TCTTCACCATCCGAAAACCGATTTGTGACATTAACTCTTACACCTTACAACA-TCCTACG 4562
Query 1278 TTCTCTACTG 1287
|||| |||||
Sbjct 4563 TTCTGTACTG 4572
> Ahg932837 jgi|Araly1|932837|scaffold_400825.1
Length=1042
Score = 71.3 bits (38), Expect = 2e-11
Identities = 40/41 (98%), Gaps = 0/41 (0%)
Strand=Plus/Plus
Query 1 ATGGCGCATCAACATTTCTTCAAGCCTCTTCTTCCTGGCTT 41
|||||| ||||||||||||||||||||||||||||||||||
Sbjct 21 ATGGCGAATCAACATTTCTTCAAGCCTCTTCTTCCTGGCTT 61
> Ahg932846 jgi|Araly1|932846|scaffold_400834.1
Length=1632
Score = 56.5 bits (30), Expect = 6e-07
Identities = 32/33 (97%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 10 CAACATTTCTTCAAGCCTCTTCTTCCTGGCTTC 42
||||||||||||||||||||||||||||| |||
Sbjct 1254 CAACATTTCTTCAAGCCTCTTCTTCCTGGATTC 1286
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59458872445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5