BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00290.1
Length=1859
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943735 jgi|Araly1|943735|scaffold_604279.1 1971 0.0
> Ahg943735 jgi|Araly1|943735|scaffold_604279.1
Length=1564
Score = 1971 bits (1067), Expect = 0.0
Identities = 1326/1443 (92%), Gaps = 50/1443 (3%)
Strand=Plus/Plus
Query 207 AACTCTCATGCCAGGGCCTTTACTTGC-G--GAAACCTTCTTGATGGACCAAAAGCTTCT 263
||||||||||||||| ||||||||||| | |||||| ||||||||||||||||||||||
Sbjct 156 AACTCTCATGCCAGGTCCTTTACTTGCGGAAGAAACCCTCTTGATGGACCAAAAGCTTCT 215
Query 264 CCTTCGATGATCTCCTTTTCATCGAACATACGCCTGCATAATGATGCTAAGCCTTTCAA- 322
||||| ||| || || ||| | || |||||||||| | ||||||||||||||||
Sbjct 216 CCTTCCATGGTC-CC-TTT--T---AC--ACGCCTGCAT-A--ATGCTAAGCCTTTCAAT 263
Query 323 T--T--A-------CTTAGGCCATTCTTCGTACGCACGAGCTTTCAGCTCCAAATCTGAT 371
| | | |||||||||||| || |||||||||||||||||||||||||| |
Sbjct 264 TACTCGATCCCTTTCTTAGGCCATTCGTCTTACGCACGAGCTTTCAGCTCCAAATC---T 320
Query 372 GATTTCGGAAGTATTGTAGCCTCTGGTGTTACTGGCTCTGGTGATGGGAATGGGAATGGG 431
|| | | ||||||||||| | |||| ||||||||||||||||||||
Sbjct 321 GA--T--G--GTATTGTAGCC-C--------CTGG---TGGTGATGGGAATGGGAATGAC 362
Query 432 AATGATTGGGTTGAGAAAGCTAAAGATGTGTTGCAGACTAGTGTCGATGCTGTTACTGAG 491
| |||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||
Sbjct 363 ATTGATTGGGTTGAGAAAGCCAAAGATGTGTTGCAGACTAGTGTCGATGCGGTTTCTGAG 422
Query 492 ACTGCAAAGAAGACTAAAGATGTCTCTGATGAGATGATCCCTCATGTTCAGCAGTTCCTT 551
||||||| |||||||| ||| | |||||||||||||||||||||||||||||| |||||
Sbjct 423 ACTGCAAGGAAGACTAGAGAAGCCTCTGATGAGATGATCCCTCATGTTCAGCAATTCCTA 482
Query 552 GACTCTAACCCTTATCTTAAAGATGTTATAGTTCCTGTTAGTCTCACTATGACTGGTACT 611
||||| ||||||||||||||||| ||||| ||||| | |||||||||||||||||||||
Sbjct 483 GACTCCAACCCTTATCTTAAAGAAGTTATCGTTCCCATCAGTCTCACTATGACTGGTACT 542
Query 612 TTATTTGCTTGGGTTGTGATGCCTAGGATTCTTAGAAGGTTTCACACTTATGCTATGCAA 671
|||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 543 TTATTTGCTTGGCTTGTGATGCCTAGGATTCTCAGGAGGTTTCACACTTATGCTATGCAA 602
Query 672 AGTTCCGCTAAACTGCTTCCCGTTGGCTTCTCTAACGAAGATGTTCCTTATGAGAAAAGC 731
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 603 AGTTCCGCTAAGCTGCTTCCCGTTGGCTTCTCTAACGAAGATGTTCCATATGAGAAAAGC 662
Query 732 TTTTGGGGAGCTTTAGAGGATCCTGCTCGTTACTTGGTGACCTTCATTGCTTTTGCACAA 791
||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct 663 TTTTGGGGAGCTTTAGAGGATCCTGCTCGTTACTTAGTGACATTCATAGCTTTTGCACAA 722
Query 792 ATTGCTGCAATGGTGGCGCCAACAACTATAGCAGCTCAATACTTTTCCCCGACTGTGAAG 851
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 723 ATTGCCGCAATGGTGGCGCCAACAACTATAGCAGCTCAATACTTTTCCCCGACAGTGAAG 782
Query 852 GGAGCGGTTATTCTCTCACTTGTGTGGTTCCTATATCGGTGGAAGACCAATGTGATTACC 911
||||| || ||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 783 GGAGCAGTCATTCTCTCACTTGTGTGGTTCCTTTATCGGTGGAAGACAAATGTGATTACC 842
Query 912 CGAATGTTGTCGGCTAAGAGTTTTGGTGGGCTTGATAGGGAGAAGGTATTGACTTTAGAC 971
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 843 CGAATGTTGTCTGCTAAGAGTTTTGGTGGGCTAGATAGGGAGAAGGTATTGACTTTAGAC 902
Query 972 AAAGTATCATCTGTTGGTCTTTTCGCTATCGGTTTGATGGCTTCTGCTGAAGCATGTGGT 1031
||||||||||| ||||||||||| || ||||||||||||||||| |||||||||||||||
Sbjct 903 AAAGTATCATCAGTTGGTCTTTTTGCAATCGGTTTGATGGCTTCAGCTGAAGCATGTGGT 962
Query 1032 GTAGCTGTTCAATCTATCTTGACAGTTGGTGGAGTTGGAGGGGTAGCCACCGCATTTGCT 1091
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 GTAGCTGTTCAATCTATCTTGACAGTTGGTGGAGTTGGAGGGGTAGCCACCGCATTTGCT 1022
Query 1092 GCCAGAGATATCCTTGGTAATGTGCTGAGTGGTCTGTCAATGCAATTCTCGCGGCCTTTC 1151
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1023 GCCAGAGATATCCTTGGTAATGTGCTGAGTGGTCTGTCAATGCAATTCTCGCGGCCGTTC 1082
Query 1152 TCTATGGGTGATACTATCAAAGCTGGATCCGTAGAAGGTCAAGTTATTGAAATGGGACTT 1211
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1083 TCTATGGGTGATACTATCAAAGCTGGATCCGTAGAAGGTCAAGTTGTTGAAATGGGACTT 1142
Query 1212 ACGACAACATCTTTGTTGAATGCAGAAAAATTTCCGGTTTTGGTACCCAATTCACTGTTT 1271
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1143 ACGACAACATCTTTGCTGAATGCAGAAAAATTTCCGGTTTTGGTACCCAATTCACTGTTT 1202
Query 1272 TCGAGTCAGGTGATTGTGAATAAGTCACGTGCTCAGTGGCGAGCAATAGCATCCAAGATC 1331
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1203 TCGAGTCAGGTAATTGTGAATAAATCACGTGCTCAGTGGCGAGCAATAGCATCCAAGATC 1262
Query 1332 CCACTGCAGATCGATGACTTGGATATGATTCCTCAAATATCAAATGAAATCAAGGAAATG 1391
||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||| |
Sbjct 1263 CCACTGCAGATCGATGACTTGGATAAGATTTCTCAAATATCTAATGAAATCAAGGAAACG 1322
Query 1392 TTGAGGTCCAACACAAAAGTTTTCTTAGGAAAAGAAGCTCCACACTGTTACTTATCGCGA 1451
|||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1323 TTGAGGTCAAACACAAAAGTTTTCTTAGGCAAAGAAGCTCCTCACTGTTACTTATCGCGA 1382
Query 1452 GTGGAAAAATCTTTCGCTGAACTTACCATTGGGTGCAATCTGATACGCATGGGAAAAGAA 1511
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1383 GTGGAAAAATCTTTCGCTGAACTTACCATTGGGTGCAATCTGAAACACATGGGAAAAGAG 1442
Query 1512 GAGCTATACAATACACAACAAGAGGTCCTTCTTGAGGCGGTGAAGATCATAAAGAAGCAC 1571
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 1443 GAGCTATACAATACACAACAAGAGGTCCTTCTTGAGGTGGTTAAGATCATAAAGAAGCAC 1502
Query 1572 GGTGTGTCGTTAGGTACCACCTGGGACAATTCTACA-TTGTGAGTGATCATTTTGTAGAG 1630
|||| |||| | |||||||||||||||||| |||| || ||||||||||||| ||||||
Sbjct 1503 GGTGCGTCGCTGGGTACCACCTGGGACAATCCTACGGTT-TGAGTGATCATTTGGTAGAG 1561
Query 1631 ACA 1633
|||
Sbjct 1562 ACA 1564
Score = 91.6 bits (49), Expect = 2e-17
Identities = 51/52 (98%), Gaps = 0/52 (0%)
Strand=Plus/Plus
Query 118 CAATGGCCGGAGTTAGGTTATCGCTTCTCAAGTCAATTCAAAGATCAATAAA 169
||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 19 CAATGGCCGGAGTTAGGTTATCGCTTCTCAAGTCACTTCAAAGATCAATAAA 70
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69819419085
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5