BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G00300.1 Length=2563 Score E Sequences producing significant alignments: (Bits) Value Ahg490540 jgi|Araly1|490540|fgenesh2_kg.6__3674__AT4G00300.1 3642 0.0 Ahg918803 jgi|Araly1|918803|scaffold_100084.1 604 7e-172 > Ahg490540 jgi|Araly1|490540|fgenesh2_kg.6__3674__AT4G00300.1 Length=2533 Score = 3642 bits (1972), Expect = 0.0 Identities = 2359/2541 (93%), Gaps = 46/2541 (2%) Strand=Plus/Plus Query 12 AAAAAC-ACTTTCTTACGACAAATCTAATAAACCCTTTTATT-CTTCTTCTTCATCTCCA 69 |||||| ||||||||| |||||||||||||||||||||| || ||||||||||||||||| Sbjct 26 AAAAACAACTTTCTTATGACAAATCTAATAAACCCTTTT-TTCCTTCTTCTTCATCTCCA 84 Query 70 TGTTCCTTCACAGCCATCGTCGTCTTCTTGATCTTCGTCTCATATCTCTTATACTCATTC 129 || || ||||| || |||||| || ||||||||||||||||||||||||||||||||||| Sbjct 85 TGCTCGTTCACGGCGATCGTCCTCCTCTTGATCTTCGTCTCATATCTCTTATACTCATTC 144 Query 130 AGTTTCATCTCTTTTCTAAACCCATATTCACCTTCT-AAATCCCCCAATTCTCTCCTCGT 188 ||||||||||| ||||||||||||||||| |||||| |||| ||||| |||||||||||| Sbjct 145 AGTTTCATCTCATTTCTAAACCCATATTCTCCTTCTAAAAT-CCCCAGTTCTCTCCTCGT 203 Query 189 ACCCGTTATCCGTCTCGGGTCGGGTCAAACACCTGAGGAACAAACGGAGCTCAAACACAT 248 ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| Sbjct 204 ACCCGTTATCCGTCTCGGGTCGGGTCAAAAACCTGAGGAACAAACAGAGCTCAAACACAT 263 Query 249 AGTCTTCGGAATCGCCGCGTCTTCAGATCTATGGAAGCATCGTAGAGAATACGTGAAAAC 308 |||||||| ||||| ||||| |||||||| ||||||||||| ||||||||||||||||| Sbjct 264 TGTCTTCGGCATCGCGGCGTCCTCAGATCTGTGGAAGCATCGCAGAGAATACGTGAAAAC 323 Query 309 ATGGTGGAAACCTAACGGAGTCATGAACGGCGCCGTTTGGCTCGACAAACCCATCAACGA 368 ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| || Sbjct 324 ATGGTGGAAACCTAACGGAGTAATGAACGGCGCCGTTTGGCTCGACAAACCCGTCAATGA 383 Query 369 CACCGTTTCTTCTTCATCAGCTTTGCCTCAGATCAGAATCTCTTCCGACACGTCGAGTTT 428 ||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||| Sbjct 384 TTCCGTTTCTTCTTCATCAGCCTTGCCTCAGATCAGAATCTCCTCCGACACGTCAAGTTT 443 Query 429 CAAGTACCGTTACCGTAACGGTCACAGATCAGCGATCAGGATCACGAGAATCGTGTCCGA 488 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 444 CAAGTACCGTTACCGTAACGGTCACAGATCGGCGATCAGGATCACGAGAATCGTGTCGGA 503 Query 489 GACGGTGAGGATGTTAAACGGAACGGAAGCGGAGAGAAACGTGAGGTGGGTTGTGATGGG 548 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 504 GACGGTGAGGATGTTAAACGGAACGGAAGCGGAGAGAAACGTGAGGTGGGTGGTGATGGG 563 Query 549 TGACGACGATACCGTGTTTTTCACGGAAAATCTTGTTAGGGTTTTGAGAAAGTACGATCA 608 ||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 564 TGACGACGACACCGTGTTTTTCACGGAGAATCTTGTTAGGGTTTTGAGAAAATACGATCA 623 Query 609 TAAACAGTTTTATTACATCGGAGCTCCGTCCGAGAGTCATTTGCAGAATCTTCATCAGTT 668 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 624 TAAACAGTTTTATTACATCGGAGCTCCGTCGGAGAGTCATTTGCAGAATCTTCATCAGTT 683 Query 669 TTCTTATGGAATGGCGTACGGTGGAGGAGGGTTTGCTATAAGTTATCCATTAGCCAAGGT 728 |||||| |||||||||||||| |||||||||||||||||||||||||| || |||||||| Sbjct 684 TTCTTACGGAATGGCGTACGGAGGAGGAGGGTTTGCTATAAGTTATCCGTTGGCCAAGGT 743 Query 729 TTTGGAGAAGATGCAAGATCGGTGTATCGAGAGATACTCCGATTTGTACGGATCCGATGA 788 ||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 744 TTTGGAGAAAATGCAAGATCGTTGCATCGAGAGATACTCCGATTTGTACGGATCCGATGA 803 Query 789 TCGGATTCATGCTTGTATGGCTGAGCTTGGTGTTCCTCTCACTAAAGAAGTTGGATTCCA 848 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 804 TCGGATTCATGCTTGTATGGCTGAGCTTGGTGTTCCTCTCACTAAAGAAGTTGGATTCCA 863 Query 849 TCAGTTTGATGTATACGGGAATCTCTTAGGGCTATTATCTGTCCATCCACAAGCACCAAT 908 |||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 864 TCAGTTCGATGTATACGGGAATCTCTTAGGGCTATTATCAGTCCATCCACAAGCGCCAAT 923 Query 909 AGTATCAATCCATCACCTAGACGTAGTGGATCCTATATTCCCAAAAACAAACCGAGTCAA 968 ||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 924 AGTGTCCATCCATCACCTAGACGTAGTGGAGCCTATATTCCCAAAAACAAACCGAGTCAA 983 Query 969 CGCATTAAAGAAGCTAATGATCCCAGCGAAACTCGATTCAGCGAGTCTTGTCCAACAATC 1028 |||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||| Sbjct 984 CGCATTAAAGAAACTAATGATCCCAGCAAAACTCGATTCAGCGAGTCTTCTCCAACAATC 1043 Query 1029 GGTATGCTATGATAAGAGTCATCAGTGGACAATGTCAATCTCGTGGGGATACACAGTTCA 1088 ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1044 GGTATGCTATGATAAAAGTCGTCAGTGGACAATGTCAATCTCGTGGGGATACACAGTTCA 1103 Query 1089 AATCACGCGTACGTATATGCCAGCAAGGATG-ATGGA-AGTGCCTACTCGCACTTTTAAT 1146 ||||||||||||||||||||||||||| || ||||| | |||| ||||| ||||||||| Sbjct 1104 AATCACGCGTACGTATATGCCAGCAAG-ATTTATGGAGA-TGCCCACTCGTACTTTTAAT 1161 Query 1147 GATTGGCACTTACGTAGCGATTTCACTAATCTTGCATTCAACACACGTCCGGTAACATGG 1206 ||||||||| ||| ||||||||||||||||||| |||||||||||||| |||||||| Sbjct 1162 GATTGGCACAAACGCCGCGATTTCACTAATCTTGCTTTCAACACACGTCCCATAACATGG 1221 Query 1207 ACGGATTGTCAGCGTCCTCGTGTGTTTTATTTCTCTCATGCGTTTAGTAACTCTTCTTCT 1266 ||||||||||||||||| |||||||||||| |||||||||||||||| || | | ||||| Sbjct 1222 ACGGATTGTCAGCGTCCGCGTGTGTTTTATCTCTCTCATGCGTTTAGCAA-T-T-CTTCT 1278 Query 1267 TCTGATACAACGACGATTAGCCA-ATACTTGAGGCACGACGAATGGTATCCTAAATGTGA 1325 |||||||||||||||| || ||| ||||||||| |||||||||||||||||||||| Sbjct 1279 ---GATACAACGACGATTA-CCGGATATTTGAGGCACAACGAATGGTATCCTAAATGTGA 1334 Query 1326 ATGGGGAATCGCGGATCCTTCCGAGATCAATCAGATATTTGTCTACAAAAAGCCTACTCC 1385 ||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||| Sbjct 1335 TTGGGGAATCGCAGATCCTTCCGACATCAATCAGATATTTGTCTACAAAAGGCCTACTCC 1394 Query 1386 GGATAGGTGGAGCAAGGTTGTTATTAGGTTTGTTCCTAGTAAAGATTCGAACTTTGCATT 1445 ||||||||||| |||||||||||| |||||| ||||||| |||||||||||||||||||| Sbjct 1395 GGATAGGTGGAACAAGGTTGTTATCAGGTTTTTTCCTAGCAAAGATTCGAACTTTGCATT 1454 Query 1446 CGTTAATGCTATTGAAGTTATCTCTGCGCCTAAGGATTTGATTGGTGACGTTGCAACCTC 1505 ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1455 CGTTAATGCCATTGAAGTTATATCTGCGCCTAAGGATTTGATTGGTGACGTTGCAACCTC 1514 Query 1506 TGTATCTCATGATGGGACTGAGAAATTCAATGGTTTAGCTAAACAAGCAATGGAGGTTGT 1565 ||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||| Sbjct 1515 TGTATCTCATGATGGAACTGAGAAATTCAATGGTTTAGCTAAACAAGCAATGCAAGTTGT 1574 Query 1566 GTATAGAGTCAATGTTGGTGGTAGAAAAGTTACTCCTTTTAATGACACATTGTGGAGGAC 1625 ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1575 GTACAGAATCAATGTTGGTGGTAGAAAAGTTACTCCTTTTAATGACACATTGTGGAGGAC 1634 Query 1626 TTGGGTTACTGATGAAGGATTCTTGAAAACCGGTGATGGGTCGTCTGAGAAAAGTTACTT 1685 ||||||||||||||| | |||||| ||||||||||||||||||||||||||| |||||| Sbjct 1635 TTGGGTTACTGATGATGAATTCTTTAAAACCGGTGATGGGTCGTCTGAGAAATCTTACTT 1694 Query 1686 CACCGGGAGGATTAAGTATAGGCGTGGAGGGGCGAGTCGTGAAGTTGGTCCTGATAATGT 1745 |||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||| Sbjct 1695 CACCGGTAGGATTAAGTATAGGCCTGGAGGGGCGAGTCGCGAAGTTGGTCCTGATAATGT 1754 Query 1746 TTACAACACTGCTCGTGTTGGTAAAAGAAGCAAT-GGATTGGTTGATATGAGTTGGGGTT 1804 || |||||||||||||||||||||||||||| | |||||||| ||||||||||||| || Sbjct 1755 CTATAACACTGCTCGTGTTGGTAAAAGAAGCA-TCGGATTGGTCGATATGAGTTGGGATT 1813 Query 1805 TCAAGGTGAATGTGGGTTACAAGTATCTCATCCGGATGCATTTCTGTGACATAGCTAGCA 1864 ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1814 TCAAGGTGAGCGCGGGTTACAAGTATCTCATCCGGATGCATTTCTGTGACATAGCTAGCA 1873 Query 1865 AATCTCTCGGCAGGCTTTA-TTTCAATGTCTACATTAACGGGAACTTGGCGTATGAAGAT 1923 |||| ||||||||||| || ||| ||||| ||||||||||||||||||||||| ||||| Sbjct 1874 AATCACTCGGCAGGCTATACTTT-AATGTTTACATTAACGGGAACTTGGCGTACCAAGAT 1932 Query 1924 TTCGATATCTCATACGCTGCGGATAATGTCCTTGCTTCTCCGTATTACATTGATTTCGTG 1983 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| Sbjct 1933 TTCGATATCTCATACGCTGCGGATGATGTCCTTGCTTCTCCGTATTACATTGATTTTGTG 1992 Query 1984 GTGGATGCTACTGCTGATGAC-AACAACCCTTCAGGATCGTCGATAACCGTTAGTGTTGG 2042 |||||||||||||||||| || |||| ||||| ||||| ||||||||||| |||||||| Sbjct 1993 GTGGATGCTACTGCTGAT-ACCAACAGCCCTTTGGGATCATCGATAACCGTAAGTGTTGG 2051 Query 2043 ACCATCAAACAAGACTAGTGTTGATGGAA-ATGGAGTGGATGCGATATTGAACGGTGTTG 2101 ||||||||||||||||| |||||||| || | ||||| |||||||||||||||||||||| Sbjct 2052 ACCATCAAACAAGACTAATGTTGATG-AACACGGAGTTGATGCGATATTGAACGGTGTTG 2110 Query 2102 AGATCATGAAGATGAATAACTCGATGGGTAGTCTTGATGGGTATGTTTCAACAGAGATGA 2161 |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 2111 AGATCATGAAGATGAATAACTCGATGGGTAGTCTTGATGGGTATGTTTCAACGGAAATGA 2170 Query 2162 TTCTGAGTACTTGCCCAAATAGGAGAAACCTGAGCATATTTATCGCAATGTTGGCGTTTA 2221 |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 2171 TTCTGAGTACTTGCCCGAATAGAAGAAACCTGAGCATATTTATCGCAATGTTGGCGTTTA 2230 Query 2222 TGTGTATATTTATGAGCTTCTACATTGTGACTCAAAGAAAGAGAG-TTAAGGATCAGTAT 2280 |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 2231 TGTGTATATTTATGAGCTTCTACATTGTGACTCAAAGAAAGA-AGGTTAAGGATCAGTAT 2289 Query 2281 GGCTGGACAAAGCTGTCCATGGACGTGCTTGAAGATAATTCCAAGTCAGGGAATCAATTT 2340 |||||||||||| |||||||||| | |||||||||||| ||||||| |||||||||||| Sbjct 2290 GGCTGGACAAAGTTGTCCATGGATATCCTTGAAGATAATCCCAAGTCCGGGAATCAATTT 2349 Query 2341 ACAGCAAGAAAGGCTTGAAGATGCTTTTGTTTGTTGAATATACGTATTAACAGTGGACTT 2400 ||||||||||||||||||||||||||||| |||||||||||| | | |||| | |||| Sbjct 2350 ACAGCAAGAAAGGCTTGAAGATGCTTTTGCTTGTTGAATATA--T-T-AACAATCTACTT 2405 Query 2401 CCTTCTTGAGTATTTACTACTTTTGAT--GATACAATGGAATTTTCATAAGGGTGTCAAT 2458 | ||||||||||||||||||||||||| ||| ||| |||||||| |||||||| || Sbjct 2406 CTTTCTTGAGTATTTACTACTTTTGATATGATGGAAT--AATTTTCACAAGGGTGTTGAT 2463 Query 2459 GTGTTGTTTATATATATATGTGTATCTATCTGGCGTATTTTTATTCAATGACAAATGGAG 2518 ||||||||||||||||| || |||| || ||| |||||||||||| | ||||| Sbjct 2464 GTGTTGTTTATATATAT--GT--ATCT----GG--TATATTTATTCAATGATAT-TGGAG 2512 Query 2519 AGACTCAATATGTAATTTTCG 2539 |||||| |||||||||||||| Sbjct 2513 AGACTCGATATGTAATTTTCG 2533 > Ahg918803 jgi|Araly1|918803|scaffold_100084.1 Length=1469 Score = 604 bits (327), Expect = 7e-172 Identities = 720/899 (80%), Gaps = 69/899 (8%) Strand=Plus/Plus Query 1405 GTTATTAGGTTTGTTCCTAGTAAAGATTCGAACTTTGCATTCGTTAATGCTATTGAAGTT 1464 ||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 498 GTTGTTAGGTTTGTTCCTAGTAAAGATTCGAAATTAGCATTCGTTAATGCTATTGAAGTT 557 Query 1465 ATCTCTGCGCCTAAGGATTTGATTGGTGACGTTGCAACCTCTGTATCTCA-TGATGGGAC 1523 |||||||| |||||||||||||||| ||||| |||||||||||||| || |||||| || Sbjct 558 ATCTCTGCACCTAAGGATTTGATTGCAGACGTAGCAACCTCTGTATC-CAATGATGGAAC 616 Query 1524 ---TGAGAAATTCAATGGTTTAGCTAAACAAGCAATGGAGGTTGTGTATAGAGTCAATGT 1580 ||||||| |||||||||||| ||||||||||||||| ||||| || ||| ||||||| Sbjct 617 AACTGAGAAACTCAATGGTTTAGTTAAACAAGCAATGGAAGTTGTTTACAGAATCAATGT 676 Query 1581 TGGTGGTAGAAAAGTTACTCCTTTTAATGACACATTGTGGAGGACTTGGGTTACTGATGA 1640 |||||| |||| ||| ||||||||||| |||||||||||||| ||||||||| ||||||| Sbjct 677 TGGTGGAAGAACAGTGACTCCTTTTAACGACACATTGTGGAGAACTTGGGTTCCTGATGA 736 Query 1641 -AGGATTCTTGAAAACCGGTGATGGGTCGTCTGAGAAAAGTT-ACTTCACCGGGAGGATT 1698 || |||||| ||| | ||||||| | ||||||||| ||| ||||| | || |||||| Sbjct 737 GAG-ATTCTTCAAAGTCAGTGATGG-T--TCTGAGAAA-GTTTACTTCTCTGGTAGGATT 791 Query 1699 AAGTATAGGCGTGGAGGGGCGAGTCGTGAAGTTGGTCCTGATAATGTTTACAACACTGCT 1758 |||||||||| ||||||||| |||||||||||||| |||||||| | || |||||||| Sbjct 792 AAGTATAGGCTTGGAGGGGCAAGTCGTGAAGTTGGCCCTGATAACCTCTATAACACTGCC 851 Query 1759 CGTGTTGGTAAA-AG-AAGCAATGGAT---T------GGTTGATATGAGTTGGG-GTTTC 1806 ||||| ||| || || || |||||| | | |||| |||||| |||| ||||| Sbjct 852 CGTGT-GGTGAAGAGCAA-CAATGGCTCCGTTTCTCAGGTTAATATGACATGGGAGTTTC 909 Query 1807 AAGGTGA--ATGTGGGTTACAAGTATCTCATCCGGATGCATTTCTGTGACATAGCTAGCA 1864 || ||| | |||| | | |||||||| ||| || |||||||||| || |||||||| | Sbjct 910 CAG-TGAGCA-GTGGCT-ATAAGTATCTAATCAGGTTGCATTTCTGCGATATAGCTAGTA 966 Query 1865 AATCTCTCGGCAGGCTTTATTTCAATGTCTACATTAACGGGAACTTGGCGTATGAAGATT 1924 || || || | ||| || ||||| ||||||| |||||||| ||||||||| |||||| Sbjct 967 TGTCGCTTGGTATGCTATACTTCAACATCTACATCAACGGGAATTTGGCGTATCAAGATT 1026 Query 1925 TCGATATCTCATACG-CTGCGGATAATGTCCTTG-CTTCTCCGTATTACATTGATTTCGT 1982 | ||||||||| | | | | ||| | ||| ||| |||| ||||||||||| ||||| || Sbjct 1027 TAGATATCTCAGATGTCA-CTGATTACGTC-TTGGCTTCCCCGTATTACATAGATTTTGT 1084 Query 1983 GGTGGATGCTACTGCTGATGACAACAACC-CTTCAGGATCGTCGATAACCGTTA-GTGTT 2040 |||||||| | ||| || | | | |||| || | | ||||| | ||| ||||| Sbjct 1085 GGTGGATG-----G-TGA-GA-A-CT-CTTCTTCGGGTT--T-GATAAGC-TTAAGTGTT 1130 Query 2041 GGACCATCAAACAAGACTAGTGTTGATGGAAATGGAGTGGATGCGATATTGAACGGTGTT 2100 |||||||| ||||||| || | | || | | | || |||||||| |||||||| || Sbjct 1131 GGACCATCGAACAAGAGTA-T-T-GA---ACACGCTGTTGATGCGATCTTGAACGGAGTC 1184 Query 2101 GAGATCATGAAGATGAATAACTCGAT-GGGTAGTCTTGATGGGTATGTTTCAACAGAGAT 2159 ||||||||||||||||||||| | || ||| ||||||||||||| |||||| || || || Sbjct 1185 GAGATCATGAAGATGAATAACAC-ATTGGGAAGTCTTGATGGGTCTGTTTCCACGGAAAT 1243 Query 2160 GATTCTGAGTAC-TTG-CCCAAATAGGAGAAACCTGAGCATATTTATCG-CAATGTTGGC 2216 ||| || || | ||| ||||| || |||||||| ||| | ||||| | ||||| |||| Sbjct 1244 GATACTTAGC-CGTTGTCCCAAC-AGAAGAAACCTTAGCTTGTTTAT-GTCAATGGTGGC 1300 Query 2217 GTTT-ATGTGTATATTTATGAGC-TTCTACATTGTGACTCAAAGAAAGAGAGTTAAGGA 2273 ||| |||||||| || ||||| || |||||||| |||||||| | || || |||||| Sbjct 1301 -TTTCATGTGTATCTTGATGAGTGTT-TACATTGTAACTCAAAGGAGGAAAGCTAAGGA 1357 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 96634951565 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5