BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00300.1
Length=2563
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490540 jgi|Araly1|490540|fgenesh2_kg.6__3674__AT4G00300.1 3642 0.0
Ahg918803 jgi|Araly1|918803|scaffold_100084.1 604 7e-172
> Ahg490540 jgi|Araly1|490540|fgenesh2_kg.6__3674__AT4G00300.1
Length=2533
Score = 3642 bits (1972), Expect = 0.0
Identities = 2359/2541 (93%), Gaps = 46/2541 (2%)
Strand=Plus/Plus
Query 12 AAAAAC-ACTTTCTTACGACAAATCTAATAAACCCTTTTATT-CTTCTTCTTCATCTCCA 69
|||||| ||||||||| |||||||||||||||||||||| || |||||||||||||||||
Sbjct 26 AAAAACAACTTTCTTATGACAAATCTAATAAACCCTTTT-TTCCTTCTTCTTCATCTCCA 84
Query 70 TGTTCCTTCACAGCCATCGTCGTCTTCTTGATCTTCGTCTCATATCTCTTATACTCATTC 129
|| || ||||| || |||||| || |||||||||||||||||||||||||||||||||||
Sbjct 85 TGCTCGTTCACGGCGATCGTCCTCCTCTTGATCTTCGTCTCATATCTCTTATACTCATTC 144
Query 130 AGTTTCATCTCTTTTCTAAACCCATATTCACCTTCT-AAATCCCCCAATTCTCTCCTCGT 188
||||||||||| ||||||||||||||||| |||||| |||| ||||| ||||||||||||
Sbjct 145 AGTTTCATCTCATTTCTAAACCCATATTCTCCTTCTAAAAT-CCCCAGTTCTCTCCTCGT 203
Query 189 ACCCGTTATCCGTCTCGGGTCGGGTCAAACACCTGAGGAACAAACGGAGCTCAAACACAT 248
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 204 ACCCGTTATCCGTCTCGGGTCGGGTCAAAAACCTGAGGAACAAACAGAGCTCAAACACAT 263
Query 249 AGTCTTCGGAATCGCCGCGTCTTCAGATCTATGGAAGCATCGTAGAGAATACGTGAAAAC 308
|||||||| ||||| ||||| |||||||| ||||||||||| |||||||||||||||||
Sbjct 264 TGTCTTCGGCATCGCGGCGTCCTCAGATCTGTGGAAGCATCGCAGAGAATACGTGAAAAC 323
Query 309 ATGGTGGAAACCTAACGGAGTCATGAACGGCGCCGTTTGGCTCGACAAACCCATCAACGA 368
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||
Sbjct 324 ATGGTGGAAACCTAACGGAGTAATGAACGGCGCCGTTTGGCTCGACAAACCCGTCAATGA 383
Query 369 CACCGTTTCTTCTTCATCAGCTTTGCCTCAGATCAGAATCTCTTCCGACACGTCGAGTTT 428
||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||
Sbjct 384 TTCCGTTTCTTCTTCATCAGCCTTGCCTCAGATCAGAATCTCCTCCGACACGTCAAGTTT 443
Query 429 CAAGTACCGTTACCGTAACGGTCACAGATCAGCGATCAGGATCACGAGAATCGTGTCCGA 488
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 444 CAAGTACCGTTACCGTAACGGTCACAGATCGGCGATCAGGATCACGAGAATCGTGTCGGA 503
Query 489 GACGGTGAGGATGTTAAACGGAACGGAAGCGGAGAGAAACGTGAGGTGGGTTGTGATGGG 548
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 504 GACGGTGAGGATGTTAAACGGAACGGAAGCGGAGAGAAACGTGAGGTGGGTGGTGATGGG 563
Query 549 TGACGACGATACCGTGTTTTTCACGGAAAATCTTGTTAGGGTTTTGAGAAAGTACGATCA 608
||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 564 TGACGACGACACCGTGTTTTTCACGGAGAATCTTGTTAGGGTTTTGAGAAAATACGATCA 623
Query 609 TAAACAGTTTTATTACATCGGAGCTCCGTCCGAGAGTCATTTGCAGAATCTTCATCAGTT 668
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 624 TAAACAGTTTTATTACATCGGAGCTCCGTCGGAGAGTCATTTGCAGAATCTTCATCAGTT 683
Query 669 TTCTTATGGAATGGCGTACGGTGGAGGAGGGTTTGCTATAAGTTATCCATTAGCCAAGGT 728
|||||| |||||||||||||| |||||||||||||||||||||||||| || ||||||||
Sbjct 684 TTCTTACGGAATGGCGTACGGAGGAGGAGGGTTTGCTATAAGTTATCCGTTGGCCAAGGT 743
Query 729 TTTGGAGAAGATGCAAGATCGGTGTATCGAGAGATACTCCGATTTGTACGGATCCGATGA 788
||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 744 TTTGGAGAAAATGCAAGATCGTTGCATCGAGAGATACTCCGATTTGTACGGATCCGATGA 803
Query 789 TCGGATTCATGCTTGTATGGCTGAGCTTGGTGTTCCTCTCACTAAAGAAGTTGGATTCCA 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 804 TCGGATTCATGCTTGTATGGCTGAGCTTGGTGTTCCTCTCACTAAAGAAGTTGGATTCCA 863
Query 849 TCAGTTTGATGTATACGGGAATCTCTTAGGGCTATTATCTGTCCATCCACAAGCACCAAT 908
|||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 864 TCAGTTCGATGTATACGGGAATCTCTTAGGGCTATTATCAGTCCATCCACAAGCGCCAAT 923
Query 909 AGTATCAATCCATCACCTAGACGTAGTGGATCCTATATTCCCAAAAACAAACCGAGTCAA 968
||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 924 AGTGTCCATCCATCACCTAGACGTAGTGGAGCCTATATTCCCAAAAACAAACCGAGTCAA 983
Query 969 CGCATTAAAGAAGCTAATGATCCCAGCGAAACTCGATTCAGCGAGTCTTGTCCAACAATC 1028
|||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 984 CGCATTAAAGAAACTAATGATCCCAGCAAAACTCGATTCAGCGAGTCTTCTCCAACAATC 1043
Query 1029 GGTATGCTATGATAAGAGTCATCAGTGGACAATGTCAATCTCGTGGGGATACACAGTTCA 1088
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1044 GGTATGCTATGATAAAAGTCGTCAGTGGACAATGTCAATCTCGTGGGGATACACAGTTCA 1103
Query 1089 AATCACGCGTACGTATATGCCAGCAAGGATG-ATGGA-AGTGCCTACTCGCACTTTTAAT 1146
||||||||||||||||||||||||||| || ||||| | |||| ||||| |||||||||
Sbjct 1104 AATCACGCGTACGTATATGCCAGCAAG-ATTTATGGAGA-TGCCCACTCGTACTTTTAAT 1161
Query 1147 GATTGGCACTTACGTAGCGATTTCACTAATCTTGCATTCAACACACGTCCGGTAACATGG 1206
||||||||| ||| ||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1162 GATTGGCACAAACGCCGCGATTTCACTAATCTTGCTTTCAACACACGTCCCATAACATGG 1221
Query 1207 ACGGATTGTCAGCGTCCTCGTGTGTTTTATTTCTCTCATGCGTTTAGTAACTCTTCTTCT 1266
||||||||||||||||| |||||||||||| |||||||||||||||| || | | |||||
Sbjct 1222 ACGGATTGTCAGCGTCCGCGTGTGTTTTATCTCTCTCATGCGTTTAGCAA-T-T-CTTCT 1278
Query 1267 TCTGATACAACGACGATTAGCCA-ATACTTGAGGCACGACGAATGGTATCCTAAATGTGA 1325
|||||||||||||||| || ||| ||||||||| ||||||||||||||||||||||
Sbjct 1279 ---GATACAACGACGATTA-CCGGATATTTGAGGCACAACGAATGGTATCCTAAATGTGA 1334
Query 1326 ATGGGGAATCGCGGATCCTTCCGAGATCAATCAGATATTTGTCTACAAAAAGCCTACTCC 1385
||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 1335 TTGGGGAATCGCAGATCCTTCCGACATCAATCAGATATTTGTCTACAAAAGGCCTACTCC 1394
Query 1386 GGATAGGTGGAGCAAGGTTGTTATTAGGTTTGTTCCTAGTAAAGATTCGAACTTTGCATT 1445
||||||||||| |||||||||||| |||||| ||||||| ||||||||||||||||||||
Sbjct 1395 GGATAGGTGGAACAAGGTTGTTATCAGGTTTTTTCCTAGCAAAGATTCGAACTTTGCATT 1454
Query 1446 CGTTAATGCTATTGAAGTTATCTCTGCGCCTAAGGATTTGATTGGTGACGTTGCAACCTC 1505
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1455 CGTTAATGCCATTGAAGTTATATCTGCGCCTAAGGATTTGATTGGTGACGTTGCAACCTC 1514
Query 1506 TGTATCTCATGATGGGACTGAGAAATTCAATGGTTTAGCTAAACAAGCAATGGAGGTTGT 1565
||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1515 TGTATCTCATGATGGAACTGAGAAATTCAATGGTTTAGCTAAACAAGCAATGCAAGTTGT 1574
Query 1566 GTATAGAGTCAATGTTGGTGGTAGAAAAGTTACTCCTTTTAATGACACATTGTGGAGGAC 1625
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1575 GTACAGAATCAATGTTGGTGGTAGAAAAGTTACTCCTTTTAATGACACATTGTGGAGGAC 1634
Query 1626 TTGGGTTACTGATGAAGGATTCTTGAAAACCGGTGATGGGTCGTCTGAGAAAAGTTACTT 1685
||||||||||||||| | |||||| ||||||||||||||||||||||||||| ||||||
Sbjct 1635 TTGGGTTACTGATGATGAATTCTTTAAAACCGGTGATGGGTCGTCTGAGAAATCTTACTT 1694
Query 1686 CACCGGGAGGATTAAGTATAGGCGTGGAGGGGCGAGTCGTGAAGTTGGTCCTGATAATGT 1745
|||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1695 CACCGGTAGGATTAAGTATAGGCCTGGAGGGGCGAGTCGCGAAGTTGGTCCTGATAATGT 1754
Query 1746 TTACAACACTGCTCGTGTTGGTAAAAGAAGCAAT-GGATTGGTTGATATGAGTTGGGGTT 1804
|| |||||||||||||||||||||||||||| | |||||||| ||||||||||||| ||
Sbjct 1755 CTATAACACTGCTCGTGTTGGTAAAAGAAGCA-TCGGATTGGTCGATATGAGTTGGGATT 1813
Query 1805 TCAAGGTGAATGTGGGTTACAAGTATCTCATCCGGATGCATTTCTGTGACATAGCTAGCA 1864
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1814 TCAAGGTGAGCGCGGGTTACAAGTATCTCATCCGGATGCATTTCTGTGACATAGCTAGCA 1873
Query 1865 AATCTCTCGGCAGGCTTTA-TTTCAATGTCTACATTAACGGGAACTTGGCGTATGAAGAT 1923
|||| ||||||||||| || ||| ||||| ||||||||||||||||||||||| |||||
Sbjct 1874 AATCACTCGGCAGGCTATACTTT-AATGTTTACATTAACGGGAACTTGGCGTACCAAGAT 1932
Query 1924 TTCGATATCTCATACGCTGCGGATAATGTCCTTGCTTCTCCGTATTACATTGATTTCGTG 1983
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 1933 TTCGATATCTCATACGCTGCGGATGATGTCCTTGCTTCTCCGTATTACATTGATTTTGTG 1992
Query 1984 GTGGATGCTACTGCTGATGAC-AACAACCCTTCAGGATCGTCGATAACCGTTAGTGTTGG 2042
|||||||||||||||||| || |||| ||||| ||||| ||||||||||| ||||||||
Sbjct 1993 GTGGATGCTACTGCTGAT-ACCAACAGCCCTTTGGGATCATCGATAACCGTAAGTGTTGG 2051
Query 2043 ACCATCAAACAAGACTAGTGTTGATGGAA-ATGGAGTGGATGCGATATTGAACGGTGTTG 2101
||||||||||||||||| |||||||| || | ||||| ||||||||||||||||||||||
Sbjct 2052 ACCATCAAACAAGACTAATGTTGATG-AACACGGAGTTGATGCGATATTGAACGGTGTTG 2110
Query 2102 AGATCATGAAGATGAATAACTCGATGGGTAGTCTTGATGGGTATGTTTCAACAGAGATGA 2161
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 2111 AGATCATGAAGATGAATAACTCGATGGGTAGTCTTGATGGGTATGTTTCAACGGAAATGA 2170
Query 2162 TTCTGAGTACTTGCCCAAATAGGAGAAACCTGAGCATATTTATCGCAATGTTGGCGTTTA 2221
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2171 TTCTGAGTACTTGCCCGAATAGAAGAAACCTGAGCATATTTATCGCAATGTTGGCGTTTA 2230
Query 2222 TGTGTATATTTATGAGCTTCTACATTGTGACTCAAAGAAAGAGAG-TTAAGGATCAGTAT 2280
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 2231 TGTGTATATTTATGAGCTTCTACATTGTGACTCAAAGAAAGA-AGGTTAAGGATCAGTAT 2289
Query 2281 GGCTGGACAAAGCTGTCCATGGACGTGCTTGAAGATAATTCCAAGTCAGGGAATCAATTT 2340
|||||||||||| |||||||||| | |||||||||||| ||||||| ||||||||||||
Sbjct 2290 GGCTGGACAAAGTTGTCCATGGATATCCTTGAAGATAATCCCAAGTCCGGGAATCAATTT 2349
Query 2341 ACAGCAAGAAAGGCTTGAAGATGCTTTTGTTTGTTGAATATACGTATTAACAGTGGACTT 2400
||||||||||||||||||||||||||||| |||||||||||| | | |||| | ||||
Sbjct 2350 ACAGCAAGAAAGGCTTGAAGATGCTTTTGCTTGTTGAATATA--T-T-AACAATCTACTT 2405
Query 2401 CCTTCTTGAGTATTTACTACTTTTGAT--GATACAATGGAATTTTCATAAGGGTGTCAAT 2458
| ||||||||||||||||||||||||| ||| ||| |||||||| |||||||| ||
Sbjct 2406 CTTTCTTGAGTATTTACTACTTTTGATATGATGGAAT--AATTTTCACAAGGGTGTTGAT 2463
Query 2459 GTGTTGTTTATATATATATGTGTATCTATCTGGCGTATTTTTATTCAATGACAAATGGAG 2518
||||||||||||||||| || |||| || ||| |||||||||||| | |||||
Sbjct 2464 GTGTTGTTTATATATAT--GT--ATCT----GG--TATATTTATTCAATGATAT-TGGAG 2512
Query 2519 AGACTCAATATGTAATTTTCG 2539
|||||| ||||||||||||||
Sbjct 2513 AGACTCGATATGTAATTTTCG 2533
> Ahg918803 jgi|Araly1|918803|scaffold_100084.1
Length=1469
Score = 604 bits (327), Expect = 7e-172
Identities = 720/899 (80%), Gaps = 69/899 (8%)
Strand=Plus/Plus
Query 1405 GTTATTAGGTTTGTTCCTAGTAAAGATTCGAACTTTGCATTCGTTAATGCTATTGAAGTT 1464
||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 498 GTTGTTAGGTTTGTTCCTAGTAAAGATTCGAAATTAGCATTCGTTAATGCTATTGAAGTT 557
Query 1465 ATCTCTGCGCCTAAGGATTTGATTGGTGACGTTGCAACCTCTGTATCTCA-TGATGGGAC 1523
|||||||| |||||||||||||||| ||||| |||||||||||||| || |||||| ||
Sbjct 558 ATCTCTGCACCTAAGGATTTGATTGCAGACGTAGCAACCTCTGTATC-CAATGATGGAAC 616
Query 1524 ---TGAGAAATTCAATGGTTTAGCTAAACAAGCAATGGAGGTTGTGTATAGAGTCAATGT 1580
||||||| |||||||||||| ||||||||||||||| ||||| || ||| |||||||
Sbjct 617 AACTGAGAAACTCAATGGTTTAGTTAAACAAGCAATGGAAGTTGTTTACAGAATCAATGT 676
Query 1581 TGGTGGTAGAAAAGTTACTCCTTTTAATGACACATTGTGGAGGACTTGGGTTACTGATGA 1640
|||||| |||| ||| ||||||||||| |||||||||||||| ||||||||| |||||||
Sbjct 677 TGGTGGAAGAACAGTGACTCCTTTTAACGACACATTGTGGAGAACTTGGGTTCCTGATGA 736
Query 1641 -AGGATTCTTGAAAACCGGTGATGGGTCGTCTGAGAAAAGTT-ACTTCACCGGGAGGATT 1698
|| |||||| ||| | ||||||| | ||||||||| ||| ||||| | || ||||||
Sbjct 737 GAG-ATTCTTCAAAGTCAGTGATGG-T--TCTGAGAAA-GTTTACTTCTCTGGTAGGATT 791
Query 1699 AAGTATAGGCGTGGAGGGGCGAGTCGTGAAGTTGGTCCTGATAATGTTTACAACACTGCT 1758
|||||||||| ||||||||| |||||||||||||| |||||||| | || ||||||||
Sbjct 792 AAGTATAGGCTTGGAGGGGCAAGTCGTGAAGTTGGCCCTGATAACCTCTATAACACTGCC 851
Query 1759 CGTGTTGGTAAA-AG-AAGCAATGGAT---T------GGTTGATATGAGTTGGG-GTTTC 1806
||||| ||| || || || |||||| | | |||| |||||| |||| |||||
Sbjct 852 CGTGT-GGTGAAGAGCAA-CAATGGCTCCGTTTCTCAGGTTAATATGACATGGGAGTTTC 909
Query 1807 AAGGTGA--ATGTGGGTTACAAGTATCTCATCCGGATGCATTTCTGTGACATAGCTAGCA 1864
|| ||| | |||| | | |||||||| ||| || |||||||||| || |||||||| |
Sbjct 910 CAG-TGAGCA-GTGGCT-ATAAGTATCTAATCAGGTTGCATTTCTGCGATATAGCTAGTA 966
Query 1865 AATCTCTCGGCAGGCTTTATTTCAATGTCTACATTAACGGGAACTTGGCGTATGAAGATT 1924
|| || || | ||| || ||||| ||||||| |||||||| ||||||||| ||||||
Sbjct 967 TGTCGCTTGGTATGCTATACTTCAACATCTACATCAACGGGAATTTGGCGTATCAAGATT 1026
Query 1925 TCGATATCTCATACG-CTGCGGATAATGTCCTTG-CTTCTCCGTATTACATTGATTTCGT 1982
| ||||||||| | | | | ||| | ||| ||| |||| ||||||||||| ||||| ||
Sbjct 1027 TAGATATCTCAGATGTCA-CTGATTACGTC-TTGGCTTCCCCGTATTACATAGATTTTGT 1084
Query 1983 GGTGGATGCTACTGCTGATGACAACAACC-CTTCAGGATCGTCGATAACCGTTA-GTGTT 2040
|||||||| | ||| || | | | |||| || | | ||||| | ||| |||||
Sbjct 1085 GGTGGATG-----G-TGA-GA-A-CT-CTTCTTCGGGTT--T-GATAAGC-TTAAGTGTT 1130
Query 2041 GGACCATCAAACAAGACTAGTGTTGATGGAAATGGAGTGGATGCGATATTGAACGGTGTT 2100
|||||||| ||||||| || | | || | | | || |||||||| |||||||| ||
Sbjct 1131 GGACCATCGAACAAGAGTA-T-T-GA---ACACGCTGTTGATGCGATCTTGAACGGAGTC 1184
Query 2101 GAGATCATGAAGATGAATAACTCGAT-GGGTAGTCTTGATGGGTATGTTTCAACAGAGAT 2159
||||||||||||||||||||| | || ||| ||||||||||||| |||||| || || ||
Sbjct 1185 GAGATCATGAAGATGAATAACAC-ATTGGGAAGTCTTGATGGGTCTGTTTCCACGGAAAT 1243
Query 2160 GATTCTGAGTAC-TTG-CCCAAATAGGAGAAACCTGAGCATATTTATCG-CAATGTTGGC 2216
||| || || | ||| ||||| || |||||||| ||| | ||||| | ||||| ||||
Sbjct 1244 GATACTTAGC-CGTTGTCCCAAC-AGAAGAAACCTTAGCTTGTTTAT-GTCAATGGTGGC 1300
Query 2217 GTTT-ATGTGTATATTTATGAGC-TTCTACATTGTGACTCAAAGAAAGAGAGTTAAGGA 2273
||| |||||||| || ||||| || |||||||| |||||||| | || || ||||||
Sbjct 1301 -TTTCATGTGTATCTTGATGAGTGTT-TACATTGTAACTCAAAGGAGGAAAGCTAAGGA 1357
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96634951565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5