BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00305.1
Length=381
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490539 jgi|Araly1|490539|fgenesh2_kg.6__3673__AT4G00305.1 381 2e-105
> Ahg490539 jgi|Araly1|490539|fgenesh2_kg.6__3673__AT4G00305.1
Length=277
Score = 381 bits (206), Expect = 2e-105
Identities = 257/280 (92%), Gaps = 9/280 (3%)
Strand=Plus/Plus
Query 106 TCGGCATCTTCAGGGAGCACTATCATC-G-----ACAAGATTCCGATGGACGATATGCTT 159
||||||||||| ||||| || |||| | | ||||||||||||| ||||||||||||
Sbjct 1 TCGGCATCTTCGGGGAGTACCATCACCGGAATAAACAAGATTCCGATTGACGATATGCTT 60
Query 160 CCGGCAACAAAGTTCGAGGATATATCATCAAGGGTTAATCCGCCGGAGAGCTGCCGGATA 219
||||| ||||| ||||||| | || |||||||||||||||||||||||||||||||||
Sbjct 61 CCGGCGACAAAATTCGAGG--AGAT-GTCAAGGGTTAATCCGCCGGAGAGCTGCCGGATA 117
Query 220 TGCCAAGATGAGTTCGACGGCGGTGACGAAGTCCGGTGTTTGAGGAATTGCGTACATGTT 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 TGCCAAGATGAGTTCGACGGCGGTGACGAAGTCCGGTGTTTGAGGAATTGCGTACATGTT 177
Query 280 TATCACAAGACGTGTATTGACCGTTGGATCCAAGACGATAAGATGACGTGTCCTTTGTGT 339
||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 178 TATCACAAGACTTGTATTGACCGTTGGATCCAAGACGATATGATGACATGTCCTTTGTGT 237
Query 340 AGGACCCCGATCGTTCCTGATTTCTAtttttttCGTTTGT 379
|||||||||||||| ||||||||||| |||||||||||||
Sbjct 238 AGGACCCCGATCGTCCCTGATTTCTACTTTTTTCGTTTGT 277
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13621545273
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5