BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00310.1
Length=1357
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490537 jgi|Araly1|490537|fgenesh2_kg.6__3671__AT4G00310.2 1306 0.0
> Ahg490537 jgi|Araly1|490537|fgenesh2_kg.6__3671__AT4G00310.2
Length=1029
Score = 1306 bits (707), Expect = 0.0
Identities = 865/939 (92%), Gaps = 19/939 (2%)
Strand=Plus/Plus
Query 202 TTT-TGGGTAAAAAATGAGGATTCGGAAGAACACGAAACTGTCATCGGTTCTTTTATCGA 260
||| ||||| |||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 101 TTTGTGGGT--AAAATGAGGATTCGGAAGAACACGAAGCTGTCATCGGTTCTTTTAGCGA 158
Query 261 CAGCAGGTTGCGGCGGAGAGAGACCGGACACGTATGTGTGTCACTTAAACCAGTCTCCAT 320
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 159 CAGCAGGTTGCGGCGGAGAGAGACCGGACACGTATGTCTGTCACTTAAACCAGTCTCCAT 218
Query 321 GGGATGTGATTCCTGTTTCTTCCTCCGGCGATTGCGAGTTAACTAACCTAGTCGACTCGT 380
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 219 GGGATGTGATTCCGGTTTCTTCCTCCGGCGATTGCGAGTTAACTAACCTACTCGACTCGT 278
Query 381 CGTGGTTCCTCCCTTTATCGTCTTCGTCTTCTTCTTCTTCTCCGCCTCTCATTCACAAGT 440
|||||||||| |||||||| |||||| ||||||||||||||||||||||||| |||||
Sbjct 279 CGTGGTTCCTTCCTTTATCATCTTCG---TCTTCTTCTTCTCCGCCTCTCATTCGCAAGT 335
Query 441 TCATTGGAGAAGAAGATAGCTTCAATGGGAATGTGAGTTTGGGAGATTGTAATGACACTG 500
||| |||||| ||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 336 TCAATGGAGATGAAGATAGCTTCAATGGGAATGTGAGTTTGGGAGATTGTAATGGCGCTG 395
Query 501 CTCAAAGGTTTAATAGCTCCGTGAGTAGTAATCAAAGTCTAGTCTCCGTAGAGAAGCTTA 560
||||||| |||||||||||| |||| |||||||| ||||| |||||||| ||||||||||
Sbjct 396 CTCAAAGATTTAATAGCTCCATGAGAAGTAATCACAGTCTTGTCTCCGTCGAGAAGCTTA 455
Query 561 ATCTCAATGCGGCGGAGGAGGATAAGTACGCTATATCGCCGGAAGTTGAAGACCCAATGG 620
||||||||||||| |||||||||||||| || ||| |||| |||||||||||||||||
Sbjct 456 ATCTCAATGCGGC---GGAGGATAAGTACGATACATCCCCGGGAGTTGAAGACCCAATGG 512
Query 621 ATCAGAGCGATGA-CTATGACAAGAAATCCGAAGCTCTTGAGCCTAATTCGCCGGTCAAA 679
||||||||||| | ||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 513 ATCAGAGCGAT-AGCTATGACAAGAAATCTGAAGCTCGCGAGCCTAATTCGCCGGTCAAA 571
Query 680 ACTTCCGGTGATGATGAAAAAGTGGTTGTAACAATTCCGACGGCGCCTAAACGTGGACGG 739
|| ||||| |||||||| ||||||| ||||||||||||| || |||||||||||||||||
Sbjct 572 ACCTCCGGCGATGATGACAAAGTGGCTGTAACAATTCCGGCGCCGCCTAAACGTGGACGG 631
Query 740 CCACGTGGTTCGGGAAAGAAAGTTTCCGCT-CCGGCATTGAAGAATCCGTACGAGTTTTA 798
|||||||||||||| ||||||| ||||||| || ||||||||||||||||||||||||||
Sbjct 632 CCACGTGGTTCGGGCAAGAAAGCTTCCGCTACC-GCATTGAAGAATCCGTACGAGTTTTA 690
Query 799 CTATTACTCTGGTTTCGGGCCACGGTGGGGGAGAAAAAGAGGCGGCTCCGACGACGAGAA 858
|||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||
Sbjct 691 TTATTACTCTGGTTTCGGGCCACAGTGGGGTAGGAAAAGAGGCGGCTCCGACGACGAGAA 750
Query 859 GATGGTTATAAACGATAGTAAAAAGAGTAGAAGTAG--C-GCTAGTAGCAG---TAGTGA 912
|||||||| | ||||| |||||||||||||||||| | |||||||||| ||||||
Sbjct 751 GATGGTTACGAGCGATAATAAAAAGAGTAGAAGTAGCACTACTAGTAGCAGTACTAGTGA 810
Query 913 CGAAGACGGTCATAAAACGGCGGCGTTTGGAGGTGGGAGTGTGAGTTTCGACGAGTTTGA 972
||||| ||| |||| |||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 811 TGAAGAGGGTAATAATACGGCGGCGTTTGGAGGTGGGAGTGTTAGTTTTGATGAGTTTGA 870
Query 973 TTTTGTGGATGAGGATTATGACGTAATGGAACAAGATCAAGGAAGTGATCATGGGAGgaa 1032
||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 871 TTTTGTGGAAGAGGATTATGACGTAATGGATCAAGATCAAGAAAGTGATCATGGGAGGAA 930
Query 1033 gaaaaagaatgagaagatgataatgatgaagaagacgatgaagaaaggaaggaagcccgt 1092
|||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 931 GAAAAATAAAGAGAAGATGATAATGATGAAGAAGACGATGAAGAGAGGAAGGAAGCCCGT 990
Query 1093 aaaggaaagGTCTTTGAAATCCCTCATGTGAAATATTTT 1131
|||||||||||||||||||||||||||||||||||||||
Sbjct 991 AAAGGAAAGGTCTTTGAAATCCCTCATGTGAAATATTTT 1029
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50779725444
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5