BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00315.1
Length=1326
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474625 jgi|Araly1|474625|fgenesh2_kg.1__4579__AT4G00315.1 1290 0.0
> Ahg474625 jgi|Araly1|474625|fgenesh2_kg.1__4579__AT4G00315.1
Length=989
Score = 1290 bits (698), Expect = 0.0
Identities = 910/1009 (90%), Gaps = 28/1009 (3%)
Strand=Plus/Plus
Query 319 AACGTCCGTGAGTTAAGTCTCAAGCTTTGTA-CTTTTGCGGAGCGTCCAACTAAATTGCC 377
||||||||||||||| |||||||||||| || |||||||||||||||||||||| |||||
Sbjct 1 AACGTCCGTGAGTTATGTCTCAAGCTTT-TATCTTTTGCGGAGCGTCCAACTAAGTTGCC 59
Query 378 CAAAAGCTTATATAAATGCAAATCGATTGTGATCTTGAAACTGAAAGACGAGATTCTCGT 437
| ||||| |||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 60 TAGTAGCTTGTATATCTGCAAATCGATTGTGATCTTGACACTGAAAGACGAGATTCTCGT 119
Query 438 TGATGTTCCTCGTAAGGTATGTCTCCCCTCCTTGAAAACATTGTTCCTTGGACGTGTGAC 497
||||||||| ||| |||||||||||||||| ||||||| ||||||||| ||||||||||
Sbjct 120 GGATGTTCCTGGTACGGTATGTCTCCCCTCCCTGAAAACGTTGTTCCTTAGACGTGTGAC 179
Query 498 TTACTCGGATGAAGATTCTCTTCACCGACTTCTCTCCAACTGCCCTGTTCTTGAGGATCT 557
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 180 TTACTCGGATGAAAATTCTCTTCACCGACTTCTTTCCAACTGCCCTGTTCTTGAGGATCT 239
Query 558 AGTTGTGGAACGAGATAG-AATTGACAATTTGGGGAAATTGAGTGTGGTTGTCAAGTCCT 616
||||||||| ||||| | ||||||||||||||| ||| |||||||| ||||||||||||
Sbjct 240 TGTTGTGGAAAGAGAT-GAAATTGACAATTTGGGAAAAGTGAGTGTGATTGTCAAGTCCT 298
Query 617 TGCAGAGACTAACCCTAAAGATGTCTTG-TCCTTGTCATCTTGATGGGATTATGATGAAT 675
||||||||||||||||||||||||| || | ||||| ||||||||||| ||||||||| |
Sbjct 299 TGCAGAGACTAACCCTAAAGATGTC-TGTTGCTTGTGATCTTGATGGGCTTATGATGATT 357
Query 676 ACTCCTTCTTTGAAGTATTTGAAAGTCACTGATGAAAGGCAAGAGAGTGATAGTGATAAT 735
|||||||||||||||||||| ||||||||||||||||||| | || | | ||||
Sbjct 358 ACTCCTTCTTTGAAGTATTTCAAAGTCACTGATGAAAGGC----TA--GACA--G-TAAT 408
Query 736 GAGAGTGATAGTGATAGTCCTCGATACTTCTACGATTTTGAAGATATGCCTAAGTTGGAG 795
| ||||||||||||||||||||||| |||| |||||||| ||||||||||||||||
Sbjct 409 --G-GTGATAGTGATAGTCCTCGATACGCCTACTCTTTTGAAGCTATGCCTAAGTTGGAG 465
Query 796 GAGGCAGATTTTGTATTGACATTCCAAAATATCAAAAAGT-TCTTTAAAT-TTGTCACAT 853
|||||||||||| ||||||||||||||||||||||||||| | |||| || | ||||||
Sbjct 466 GAGGCAGATTTTTTATTGACATTCCAAAATATCAAAAAGTGT-TTTAGATCAT-TCACAT 523
Query 854 CTATTAAGCGTCTTTCGTTATGCTTGGGAGTCTACACCGAAGAGTCTTTATATCATGAGG 913
|| ||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 524 CTGTTAAGCGGCTTTCGTTATGCTTAGGAGTCTACAAAGAAGAGTCTTTATATCATGAGG 583
Query 914 GTCTTGTCTTCAACCAGCTTG-AACAATTGAAGATATGTTCATGTGATTCAGATTGGTCA 972
||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 584 GTCTTGTTTTCAACCAGCTTGAAAC-TTTGAAGATATGTTCATGTGATTCAGATTGGTCA 642
Query 973 ATTTTACTTTCTCGGTTACTCGAAAG-TTCTCCCAATTTACGAGAGCTCGAGGCTTACGT 1031
||||||||| ||||||||||| | | |||||| ||||||||||| |||||| |||||||
Sbjct 643 ATTTTACTTGCTCGGTTACTC-AGGGATTCTCCTAATTTACGAGATCTCGAGACTTACGT 701
Query 1032 GATAGAAGATCATCCAGATAGGCGTGTGGATCTACCAAATCAGTGGGGCAATCAGCTGAA 1091
|||||||||||||||||| |||||||| ||||||||||||| |||| |||||| ||||
Sbjct 702 GATAGAAGATCATCCAGACAGGCGTGTAAATCTACCAAATCATTGGGACAATCAATTGAA 761
Query 1092 TTGTGTTCCTAAATGTTTGTTGTCGAGTCTCGAAACGTTCAAGTGGAGTGAGATGTATGG 1151
|||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||
Sbjct 762 TTGTGTTCCTAAATGTTTGTTGTCGAGTCTCGAAACGTTCTATTGGAGTGAGATGCATGG 821
Query 1152 ATTGCTGCAGAACCAGATGGATGTGGCTAAATATATCTTGAGAAATGCTCGATGCTTAAA 1211
||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 822 ATTGCTGCAGAACCAGATGGATGTGGCTAAATACATCTTGAGAAATGCTCTCTGCTTAAA 881
Query 1212 GTCTGCGACAATCT-TTTTTCCGACAACCTATGCTAAAGAAACAAGAGATGAGATGATCG 1270
|||||||||||||| |||||| |||||||||||| ||||||||| ||||||||||||||
Sbjct 882 GTCTGCGACAATCTCTTTTTC-GACAACCTATGCGCAAGAAACAATAGATGAGATGATCG 940
Query 1271 AGGAGTTGTCACTTTCTTTTCAAGGTCCAGAGACATGCCAAGTCTTCTT 1319
| |||||| |||||||||||| ||||||||| ||||||||||| |||||
Sbjct 941 AAGAGTTGGCACTTTCTTTTCGAGGTCCAGAAACATGCCAAGTTTTCTT 989
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49597915017
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5