BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00330.1
Length=1518
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943730 jgi|Araly1|943730|scaffold_604274.1 1687 0.0
> Ahg943730 jgi|Araly1|943730|scaffold_604274.1
Length=1244
Score = 1687 bits (913), Expect = 0.0
Identities = 1155/1264 (91%), Gaps = 48/1264 (4%)
Strand=Plus/Plus
Query 81 CTCCACGAACT-T-TCCGATGCCCAGTCGTCGGAGACATAGCTACACCGTCGGA---TCT 135
||||||||| | | ||||||||||||||||||||||||||||||| ||| | || |||
Sbjct 4 CTCCACGAAATATATCCGATGCCCAGTCGTCGGAGACATAGCTACGCCGGCAGATCTTCT 63
Query 136 CCTGCAACCACATCTTCCAATTACAGTAACACTACTTTCACCGATCGTTCCTTCCCGACA 195
||||||||||||||||| | ||||||||||||||||||||||||||||||||| || |
Sbjct 64 CCTGCAACCACATCTTCTAGTTACAGTAACACTACTTTCACCGATCGTTCCTT-CC--CT 120
Query 196 ACCCCTGCCCGTACAT-CCACCGACACAA-CCACCTCCATCGCTCGTCGCATCTCCGGTA 253
|||||||||||||| | ||||||||| || ||| ||||||||||||||| ||||||||||
Sbjct 121 ACCCCTGCCCGTAC-TCCCACCGACA-AATCCAGCTCCATCGCTCGTCGGATCTCCGGTA 178
Query 254 TCTTCATCAACTGCTTCACTCCTCCCGATTCCGTTTCCTCCAACTACATCGACAATTCAA 313
||||||||| |||||||||||||||||| | | || | | |||||| ||||||
Sbjct 179 TCTTCATCAGCTGCTTCACTCCTCCCGA-------T-C-CCGA-T--ATCGACCATTCAA 226
Query 314 AGTCCTCTTCCGACAATAATATCCGTAGTAGACGTAGCTCAACAGGAAGTAGTAGTGTAC 373
|||| ||||||||| ||||||||||||||||||||||||||||| | | | |||||||
Sbjct 227 AGTCATCTTCCGACCATAATATCCGTAGTAGACGTAGCTCAACA-G--G-A--AGTGTAC 280
Query 374 AGAGGAGTTATGGAAATGCAAACGAAACAGAGCATACAAGATTCACCTTCGATGAAATCT 433
||||||||||||| |||| || |||||| || || |||||||||||||||||||
Sbjct 281 AGAGGAGTTATGGGAATGTAAGCGAAAC--AG------AG-TTCACCTTCGATGAAATCT 331
Query 434 ACGACGCGACCAAGAACTTCTCTCCGTCCTTTAGGATCGGACAAGGCGGTTTTGGCACTG 493
||||||| ||||||||||||||||| ||||| |||||||| |||||||||||||||||||
Sbjct 332 ACGACGCTACCAAGAACTTCTCTCCATCCTTCAGGATCGGTCAAGGCGGTTTTGGCACTG 391
Query 494 TTTACAAGGTCAAACTCAGAGATGGCAAAACCTTTGCTGTGAAACGTGCCAAAAAGAGTA 553
||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||
Sbjct 392 TTTACAAGGTCAAACTCCGAGATGGCAAAACCTTTGCTGTCAAACGGGCCAAAAAGAGTA 451
Query 554 TGCATGACGACCGTCAAGGTGCAGATGCAGAGTTTATGAGTGAGATTCAGACATTAGCTC 613
||||||||||||||||| | | ||||||||||||||||||||||||||| || ||||
Sbjct 452 TGCATGACGACCGTCAA---G--G-TGCAGAGTTTATGAGTGAGATTCAGACCTTGGCTC 505
Query 614 AAGTTACTCATTTGAGTTTGGTTAAATACTATGGATTTGTTGTTCATAACGACGAGAAGA 673
| ||||| ||||||||||||||||| ||||| |||| ||| ||||| ||||||||||||
Sbjct 506 AGGTTACGCATTTGAGTTTGGTTAAGTACTACGGATATGTGGTTCACGACGACGAGAAGA 565
Query 674 TTCTCGTTGTGGAGTATGTAGCCAATGGAACTCTTAGAGATCACTTGGATTGTAAGGAAG 733
||||| |||| |||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 566 TTCTCATTGTCGAGTATGTCGCCAATGGAACTCTTAGAGATCACTTGGATTGCAAGGAAG 625
Query 734 GAAAGACTCTCGACATGGCGACTCGGTTAGATATCGCAACCGATGTAGCTCATGCCATAA 793
||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 626 GAAAGGCCCTCGACATGGCGACTCGGCTAGATATCGCAACCGATGTAGCTCATGCCATAA 685
Query 794 CCTATCTTCACATGTATACACAGCCACCTATCATCCACAGAGATATCAAATCTTCAAACA 853
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 686 CCTATCTTCACATGTATACACAGCCACCTATCATCCACAGAGACATCAAATCTTCAAACA 745
Query 854 TTCTCCTCACTGAGAATTACAGAGCCAAGGTTGCTGATTTCGGGTTT-GCAAGATTAGCT 912
|||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||
Sbjct 746 TTCTCCTCACTGAGAATTTCAGAGCCAAGGTTGCTGATTTC-GGTTTCGCAAGATTAGCT 804
Query 913 CCAGATACTGATTCAGGAGCCACGCATGTGTCAACACAAGTCAAAGGAACCGCTGGTTAC 972
|||||||| || ||||||||||||||| | |||||||||||||||||||| || ||||||
Sbjct 805 CCAGATACCGAATCAGGAGCCACGCATATCTCAACACAAGTCAAAGGAACAGCAGGTTAC 864
Query 973 TTAGACCCAGAGTACTTAACAACGTATCAACTCACAGAGAAAAGTGACGTCTACTCTTTT 1032
||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||| |||
Sbjct 865 CTAGACCCAGAGTACTTAACCACGTACCAACTCACGGAGAAAAGCGACGTCTACTCCTTT 924
Query 1033 GGTGTACTGCTCGTCGAGCTTCTCACAGGTCGGCGTCCCATCGAGCTTAGCAGAGGACAA 1092
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 925 GGTGTACTGCTCGTCGAGCTTCTCACAGGTCGGCGTCCCATTGAGCTTAGCAGAGGACAA 984
Query 1093 AAAGAACGCATCACCATTAGATGGGCGATCAAGAAGTTCACGAGTGGAGATACGATATCG 1152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 985 AAAGAACGCATCACCATTAGATGGGCGATCAAGAAGTTCACGAGTGGAGATACGATATCG 1044
Query 1153 GTATTGGACCCGAAGCTAGAACAGAATTCAGCGAACAACTTAGCATTAGAGAAGGTATTG 1212
||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||
Sbjct 1045 GTATTGGACCCGAAGCTAGAACAAAATCCAGCGAACAGCTTAGCATTAGAGAAGGTATTG 1104
Query 1213 GAGATGGCGTTTCAATGTCTAGCTCCTCATAGACGTTCGAGACCAAGCATGAAAAAATGC 1272
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1105 GAGATGGCGTTTCATTGTCTAGCTCCTCATAGACGTTCGAGACCAAGCATGAAAAAATGC 1164
Query 1273 AGTGAGATTTTGTGGGGAATTCGTAAAGATTACAGAGAGTTGCTCAACACAAGTCTTTGA 1332
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1165 AGTGAGATTTTGTGGGGAATTCGTAAAGATTACAGAGAGTTCCTCAACACAAGTCTTTGA 1224
Query 1333 TGAT 1336
|||
Sbjct 1225 -GAT 1227
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56830645540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5