BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00335.1
Length=1177
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327739 jgi|Araly1|327739|fgenesh1_pm.C_scaffold_6002959 915 0.0
> Ahg327739 jgi|Araly1|327739|fgenesh1_pm.C_scaffold_6002959
Length=573
Score = 915 bits (495), Expect = 0.0
Identities = 549/575 (95%), Gaps = 4/575 (1%)
Strand=Plus/Plus
Query 228 ATGGGAGGTTGCTGTAGTTCTTCGAGGAAGTCACATCTTGTTGGAACACCTGTTTACTAT 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGAGGTTGCTGTAGTTCTTCGAGGAAGTCACATCTTGTTGGAACACCTGTTTACTAT 60
Query 288 TATTGTCCAGAATCTTTTGAAGAGCTTGTCCCTTCAGGAACCCGTGCTGGTGTGGGATCA 347
|||||||||||||||||||||||||| | ||||||||| | || |||||||||||||||
Sbjct 61 TATTGTCCAGAATCTTTTGAAGAGCTCGGGCCTTCAGGAGCTCGAGCTGGTGTGGGATCA 120
Query 348 GCATTCACCACAGGCCTCTTGGTTGATATAGGTTTGGAGA-CATCTATACCTGACACCTT 406
|||||||||||||||||||||||||||||||||||||| | || ||||||||||||||
Sbjct 121 GCATTCACCACAGGCCTCTTGGTTGATATAGGTTTGGATTTC-TCCATACCTGACACCTT 179
Query 407 TTGTGCTCCTGCTCCTCTTCCATATGATTTGCTTTTGGGGCGACCACAATGCACAGATTC 466
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 180 TTGTGCTCCTGCTCCTCTTCCATATGATTTGCTTTTGGGACGACCACAATGCACAGATTC 239
Query 467 TGAGTCCATCAAAGGAAGGATGAGTGGAAGCAGTTTTGAAACGCTAGCGACGTGTGAAGA 526
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 240 TGAGTCCATCAAAGGAAGGATGAGTGGAAGCAGTTTTGAAACGCTAGCGACATGTGAAGA 299
Query 527 TCTTGGGGAA-TCAGACTGTAAAACTCTAGCCAGCTCAGTCATTCTTTCACCGAGGAAAT 585
|||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 300 TCTTGGGGAACT-AGACTGTAAAACTCAAGCCAGCTCAGTCATTCTTTCACCGAGGAAAT 358
Query 586 CAGATTTCTCGAAACATCAAGGATTGAAGATATTGGTTGATGAAGAGGAGGACTGTTGTC 645
| |||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 359 CCGATTTCTCTAAACAGAAAGGATTGAAGATATTGGTAGATGAAGAGGAGGACTGTTGTC 418
Query 646 CTATTTGCTTTGAAGATTATGATGTTGAGAATCCAAGACTAACGACAAAGTGTGAGCACG 705
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 419 CTATTTGCTTTGAAGATTATGATGTTGAGAATCCAAGACTAACGACAAACTGTGAGCACG 478
Query 706 AATTTCACCTCTCTTGTCTTCTGGAGTGGATTGAAAGAAGCGATAGATGCCCAATATGTG 765
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 479 ATTTTCACCTCTCTTGTCTTCTGGAGTGGATTGAAAGAAGCGATAGATGCCCAATTTGTG 538
Query 766 ATAAGGAAGTTGTGTTTGATGATCGCTTGAACTAG 800
||||||||||||||||||||||| | |||||||||
Sbjct 539 ATAAGGAAGTTGTGTTTGATGATTGTTTGAACTAG 573
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43917600384
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5