BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00340.1
Length=2791
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327738 jgi|Araly1|327738|fgenesh1_pm.C_scaffold_6002958 1879 0.0
> Ahg327738 jgi|Araly1|327738|fgenesh1_pm.C_scaffold_6002958
Length=2436
Score = 1879 bits (1017), Expect = 0.0
Identities = 1147/1211 (95%), Gaps = 4/1211 (0%)
Strand=Plus/Plus
Query 1393 GGAAACATCTCTAAGTCTATAATTATATTGTGCAGCGTTGTTGGGTCAATCTCAGTTCTT 1452
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1228 GGAAACATCTCTAAATCCATAATTATATTGTGCAGCGTTGTTGGGTCAATCTCAGTTCTT 1287
Query 1453 GGGTTTACATTGTTAGTGCCATTGATTCTGTTGAAGAGGAGTCGAAAGAGGAAGAAGACT 1512
||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1288 GGGATTACATTGTTGGTGCCATTGATTCTGTTGAAGAGGAGTCGGAAGAGGAAGAAGACG 1347
Query 1513 AGGAAACAAGACGAAGATGGGTTTGCTGTGTTGAATCTT-AAGGTATTTTCTTTCAAGGA 1571
|||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 1348 AGGAAACAAGACGAAGATGGGTTTGCTGTGTTGAAT-TTGAAGGTCTTTTCTTTCAAGGA 1406
Query 1572 GCTTCAATCAGCTACCAATGGGTTCTCGGATAAGGTCGGACACGGCGGTTTTGGGGCGGT 1631
||||||| |||||||||||||||| ||||||||||| |||||||| ||||||||||| ||
Sbjct 1407 GCTTCAAGCAGCTACCAATGGGTTTTCGGATAAGGTTGGACACGGTGGTTTTGGGGCAGT 1466
Query 1632 GTTT-AAGGGAACATTACCGGGTTCTTCTACATTCGTGGCTGTGAAACGCTTAGAAAGAC 1690
||| || ||||||||||||||||||||||| || ||||| |||||||||||||||||||
Sbjct 1467 -TTTCAAAGGAACATTACCGGGTTCTTCTACCTTTGTGGCCGTGAAACGCTTAGAAAGAC 1525
Query 1691 CTGGAAGCGGGGAGAGTGAGTTCCGGGCAGAGGTATGCACCATTGGGAACATTCAACATG 1750
|||||||||||||||| ||||||||||| |||||||| |||||||| |||||||||||||
Sbjct 1526 CTGGAAGCGGGGAGAGCGAGTTCCGGGCTGAGGTATGTACCATTGGCAACATTCAACATG 1585
Query 1751 TCAATCTCGTTAGGCTTAGAGGTTTCTGTTCAGAGAATCTTCATAGGCTTCTTGTCTATG 1810
||||||||||||||||| | ||||||||||||||||||||||| || ||||||||||| |
Sbjct 1586 TCAATCTCGTTAGGCTTCGGGGTTTCTGTTCAGAGAATCTTCACAGACTTCTTGTCTACG 1645
Query 1811 ATTACATGCCACAAGGATCCTTGAGTTCCTATCTGTCTAGAACAAGCCCCAAATTGCTAA 1870
|||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||
Sbjct 1646 ATTACATGCCACAAGGATCCCTGAGCACCTATTTGTCTAGAACAAGCCCCAAATTGCTAA 1705
Query 1871 GCTGGGAGACCCGTTTCAGGATCGCGTTAGGTACTGCCAAAGGGATCGCGTACTTGCATG 1930
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1706 ACTGGGAGACCCGTTTTAGGATCGCGTTAGGTACTGCCAAAGGGATCGCGTACTTGCATG 1765
Query 1931 AAGGATGCAGGGACTGTATTATACACTGTGATATCAAACCGGAGAACATTCTTTTGGACA 1990
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1766 AAGGATGCAGGGACTGTATTATTCACTGTGATATCAAGCCGGAGAACATTCTTTTGGACA 1825
Query 1991 GTGATTACAACGCCAAAGTGTCTGATTTTGGCTTGGCTAAGCTCCTTGGACGTGACTTCA 2050
| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1826 GCGATTACAACGCCAAAGTATCTGATTTTGGCTTGGCTAAGCTCCTTGGCCGTGACTTCA 1885
Query 2051 GCAGAGTTCTAGCCACGATGAGAGGGACATGGGGCTACGTGGCTCCCGAATGGATATCTG 2110
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1886 GCAGAGTTCTAGCCACAATGAGAGGGACATGGGGCTACGTGGCTCCTGAATGGATATCAG 1945
Query 2111 GTTTGCCCATCACGACAAAAGCTGATGTGTATAGCTTTGGAATGACATTGCTCGAGCTGA 2170
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1946 GTTTGCCCATCACAACAAAAGCTGATGTGTATAGCTTTGGAATGACATTGCTCGAGCTGA 2005
Query 2171 TCGGTGGTAGAAGAAATGTCATTGTTAATAGCGATACACTGGGAGAGAAAGAGACAGAAC 2230
|||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 2006 TCGGTGGTCGAAGAAATGTCATTGTTAATAGCGATACACTTGGAGAGAAAGATACAGAAC 2065
Query 2231 CAGAGAAATGGTTCTTTCCGCCATGGGCAGCGCGTGAGATCATACAAGGCAATGTGGACT 2290
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 2066 CAGAGAAATGGTTCTTTCCGCCATGGGCAGCGCGTGAAATCATACAAGGAAATGTGGACT 2125
Query 2291 CTGTGGTTGACTCTAGACTCAACGGAGAATATAACACTGAAGAGGTGACGAGGATGGCAA 2350
||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 2126 CTGTGGTCGACTCTAGACTCAACCGAGAATATAACATTGAAGAGGTGACGAGGATGGCAA 2185
Query 2351 CGGTGGCGATATGGTGCATACAAGACAATGAAGAGATAAGGCCAGCAATGGGAACGGTAG 2410
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2186 CGGTGGCGATATGGTGCATACAAGACAATGAAGAGATAAGGCCAGCGATGGGAACGGTAG 2245
Query 2411 TGAAGATGCTTGAAGGAGTTGTGGAGGTGACGGTTCCTCCACCGCCTAAATTAATACAAG 2470
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 2246 TGAAGATGCTTGAAGGAGTTGTGGAGGTGACAGTTCCTCCACCGCCTAAATTGATACAAG 2305
Query 2471 CTCTTGTCTCCGGCGATTCATACCGAGGAGTGAGCGGCACAAGCTGTAGTGAAGGCCATG 2530
|||||||||||||||||||||||||||||||||| ||||||| |||||| ||| | | ||
Sbjct 2306 CTCTTGTCTCCGGCGATTCATACCGAGGAGTGAGTGGCACAACCTGTAGCGAAAGTCGTG 2365
Query 2531 GCTGTTCGGATCTCAATACAGGTTTGTCTAGCCCTGGCTCACGGTCGTCTTTTGGTAGAC 2590
|||||||||||||||| || || |||||||||||||||||||||||||||||||||||||
Sbjct 2366 GCTGTTCGGATCTCAACACTGGATTGTCTAGCCCTGGCTCACGGTCGTCTTTTGGTAGAC 2425
Query 2591 CTTCTCCTTGA 2601
|||||||||||
Sbjct 2426 CTTCTCCTTGA 2436
Score = 1808 bits (979), Expect = 0.0
Identities = 1130/1202 (94%), Gaps = 14/1202 (1%)
Strand=Plus/Plus
Query 158 CTT-Atcttcctcttcttcttctcctcttccttc-t--tccACCA-C--CATCTGT--AC 208
||| |||||| ||||||||||||||||||||||| | ||||| | | | ||||| |
Sbjct 22 CTTCATCTTCTTCTTCTTCTTCTCCTCTTCCTTCTTCCTCCACTATCTTCTTCTGTGGAA 81
Query 209 AA-AGCAAAGTTATCATCAAAGGAAACCAAACCATTCTGAGTTTCAAAGCTATTTTCCGG 267
|| | |||||||||||||||||||||||| || ||||| || ||||||||||||||||||
Sbjct 82 AACAACAAAGTTATCATCAAAGGAAACCATACGATTCTCAGCTTCAAAGCTATTTTCCGG 141
Query 268 CTTGGTTTCTTCAGCACCACCAATGGTTCCTCCAATTGGTACTTGGGTATCTCTTACGCT 327
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 142 CTTGGTTTCTTCAGCACCACCAATGGTTCCTCCAATTGGTATTTGGGTATCTCTTATGCT 201
Query 328 TCTATGCCAACTCCCACCCACGTTTGGGTCGCCAATCGAATCCGACCCGTTTCGGATCCT 387
|| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 202 TCCATGCCTACTCCCACCCACGTTTGGGTCGCCAATCGAATCCGACCCGTTTCCGATCCT 261
Query 388 GACTCTTCCACTCTCGAGCTCACCTCCACCGGATACCTAATCGTCAGTAACCT-CCGTGA 446
||||||||||||||||||||||||||||||||| ||||||||||||| || || ||||||
Sbjct 262 GACTCTTCCACTCTCGAGCTCACCTCCACCGGACACCTAATCGTCAG-AAACTCCCGTGA 320
Query 447 CGGCGTCGTTTGGCAGACGGATAACAAACAACCCGGAACCGATTTCCGGTTCTCTGAAAC 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 CGGCGTCGTTTGGCAGACGGATAACAAACAACCCGGAACCGATTTCCGGTTCTCTGAAAC 380
Query 507 CGGGAATCTGATTTTGATCAACGACGACGGTTCTCCGGTTTGGCAGAGCTTTGACAATCC 566
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 381 CGGGAATCTGATTTTGATCAACGACGACGGCTCTCCGGTTTGGCAGAGCTTTGATAATCC 440
Query 567 GACTGACACGTGGCTTCCGGGGATGAATGTCACCGGTCTAACAGCTATGACTTCGTGGCG 626
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 441 GACCGACACGTGGCTTCCGGGGATGAATGTCACCGGTCTAACGGCTATGACTTCGTGGCG 500
Query 627 GAGTCTCTTCGATCCTTCGCCGGGGTTTTACTCTCTGAGACTGAGTCCAAGCTTCAACGA 686
|| ||| ||||||||||||||||| |||||||| ||||||||||||||| ||||||||||
Sbjct 501 GACTCTGTTCGATCCTTCGCCGGGATTTTACTCCCTGAGACTGAGTCCAGGCTTCAACGA 560
Query 687 GTTCCAGCTTGTTTACAAAGGAACCACACCGTATTGGTCCACCGGAAATTGGACCGGAGA 746
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 561 GTTCCAGCTTGTTTACAAAGGAGCCACACCGTATTGGTCCACCGGAAATTGGACCGGAGA 620
Query 747 AGCCTTCGTCGGCGTTCCGGAAATGACCATTCCTTACATCTACAGGTTCCATTTCGTTAA 806
||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||
Sbjct 621 TGCCTTCGTCGGCGTTCCAGAGATGACCATTCCATACATCTACAGGTTCCATTTCGTTAA 680
Query 807 CCCTTACACTCCCACGGCGTCGTTTTGGTACATCGTCCCACCGTTGGACTCCGTTTCCGA 866
||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 681 CCCTTACACTCCCTCGGCGTCGTTTTGGTACATCGTCCCACCGTTGGACGCCATTTCCGA 740
Query 867 GCCACGGCTGACGCGGTTCATGGTCGGCGCCAACGGCCAGCTGAAGCAGTACACTTGGGA 926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 GCCACGGCTGACGCGGTTCATGGTCGGCGCCAACGGCCAGCTGAAGCAGTACACTTGGGA 800
Query 927 TCCACAGACGCAGAGCTGGAACATGTTCTGGTTGCAGCCGGAGGATCCTTGCCGCGTTTA 986
|||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||
Sbjct 801 CCCACAGACGCAGAGCTGGAACATGTTCTGGTTTCAGCCGGAGGGTCCGTGCCGCGTTTA 860
Query 987 CAATCTCTGTGGTCAATTAGGGTTTTGTAGCAGCGAATTGCTCAAGCCCTGTGCTTGCAT 1046
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 861 CAGTCTCTGTGGTCAATTAGGGTTTTGCAGCAGCGAATTGCTCAAGCCCTGTGCTTGCAT 920
Query 1047 CCGCGGTTTCCGGCCTAGGAACGACGCCGCGTGGAGATCTGATGATTACAGCGACGGATG 1106
|||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 921 CCGCGGTTTCCGACCTAAGAACGACGACGCGTGGAGATCTGATGATTACAGCGACGGATG 980
Query 1107 CCGCCGTGAAAACGGTGATTCCGGCGAAAAGAGTGATACTTTTGAAGCCGTTGGTGATCT 1166
|||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 981 CCGCCGTGAAAATGGTGATTCCGGCGAAAAGAGTGATACTTTTGAGGCGGTTGGTGATCT 1040
Query 1167 ACGCTACGATGGTGATGTGAAGATGTCACGGTTGCAGGTAAGCAAGAGCTCTTGCGCCAA 1226
|| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1041 GCGGTACGACGGTGATGTGAAGATGTCGCGGTTGCAGGTAAGCAAGAGCTCTTGCGCCAA 1100
Query 1227 AACTTGCTTAGGAAACTCTTCTTGTGTTGGTTTTTATCATAAGGAGAAGTCTAATCTCTG 1286
||| ||||| |||||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 1101 AACCTGCTTGGGAAACTCTTCTTGTGTTGGTTTTTATCATAACGAGAACTCGAATCTCTG 1160
Query 1287 CAAAATTTTACTCGAGTCGCCGAATAATC-TGAAGAATTCGAGCTCGTGGACTGGAGTTA 1345
||||||| ||||||||||||||| ||| | |||||||||||||||| ||||||||| |||
Sbjct 1161 CAAAATTCTACTCGAGTCGCCGA-TAAACCTGAAGAATTCGAGCTCCTGGACTGGAATTA 1219
Query 1346 GT 1347
||
Sbjct 1220 GT 1221
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105319527425
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5