BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00350.1
Length=1830
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490532 jgi|Araly1|490532|fgenesh2_kg.6__3666__AT4G00350.1 2614 0.0
> Ahg490532 jgi|Araly1|490532|fgenesh2_kg.6__3666__AT4G00350.1
Length=1688
Score = 2614 bits (1415), Expect = 0.0
Identities = 1598/1689 (95%), Gaps = 2/1689 (0%)
Strand=Plus/Plus
Query 1 AATCCTCCCCAAGTAGAGAAATATAAAAACTTAGACAAATATTGCCACAACCGGTGAAAA 60
||||||||||| ||||||||| ||||||| | ||| ||| |||||||||||||| |||||
Sbjct 1 AATCCTCCCCACGTAGAGAAAAATAAAAAATAAGATAAAGATTGCCACAACCGGAGAAAA 60
Query 61 TGGAGATCCCGGTTCGAGAGGAGAGAAGATCCTCCTCATCCTCTGCCGGACCATTACAAC 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 TGGAAATCCCGGTTCGAGAGGAGAGAAGATCCTCCTCATCCTCTGCCGGACCATTACCAC 120
Query 121 AAACCATCTCCTTAGCAGCTGACGACGCCATCGATAGCGGTCCATCCTCTCCGCTTGTCG 180
|||||||| ||||||||||||| |||||||||||||||||||| |||||||||||| |||
Sbjct 121 AAACCATCGCCTTAGCAGCTGATGACGCCATCGATAGCGGTCCTTCCTCTCCGCTTCTCG 180
Query 181 TCAAAGTCTCTGTCTTCGAAACAGAGCATGAGACGACCAAGCTT-ATCCACGCGCCGTCA 239
||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||
Sbjct 181 TCAAAGTCTCTGTCTTCGAAACAGAGCATGAGACGACAAAGCTTCAT-CACGCGCCGTCA 239
Query 240 ACTCTGCTCGGTGAAACCACCGGAGACGCTGATTTTCCTCCCATTCAAAGCTTTAGAGAT 299
||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 240 ACTCTGCTCGGAGAAACCACCGGAGACGCCGATTTTCCTCCGATTCAAAGCTTTAGAGAT 299
Query 300 GCTAAACTTGTTTGTGTGGTTGAAACGTCTAAGCTTTGGGAAATAGCTGCACCTATAGCT 359
||||||||||| |||||| | |||||||| |||||||||||||| |||||||| ||||||
Sbjct 300 GCTAAACTTGTCTGTGTGATCGAAACGTCCAAGCTTTGGGAAATTGCTGCACCAATAGCT 359
Query 360 TTCAACATTCTTTGTAATTACGGTGTTAACTCCTTCACAAGCATCTTCGTTGGCCATATC 419
||||| |||||||| ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 360 TTCAATATTCTTTGCAATTACGGTGTCAACTCCTTCACAAGCATCTTCGTCGGCCATATC 419
Query 420 GGCGATCTTGAGCTTTCTGCCGTCGCCATCGCTCTCTCCGTCGTCTCTAATTTCTCCTTT 479
|||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 420 GGCGATCTTGAGCTCTCCGCCGTCGCCATCGCTCTCTCCGTCGTCTCCAATTTCTCCTTT 479
Query 480 GGTTTCTTGCTGGGAATGGCGAGTGCGTTGGAAACGTTATGTGGACAAGCGTTTGGAGCG 539
||||||||||||||||||||||||||||||||||| |||| || || ||||||||||||
Sbjct 480 GGTTTCTTGCTGGGAATGGCGAGTGCGTTGGAAACACTATGCGGGCAGGCGTTTGGAGCG 539
Query 540 GGACAAATGGATATGTTAGGTGTTTATATGCAGCGTTCTTGGCTTATCCTCCTCGGAACT 599
|||||||||||||||||||| ||||| ||||||||||| |||||||||||||| ||||||
Sbjct 540 GGACAAATGGATATGTTAGGCGTTTACATGCAGCGTTCATGGCTTATCCTCCTGGGAACT 599
Query 600 TCCGTCTGCTTGCTTCCTCTCTACATCTACGCAACTCCACTTCTCATTTTACTCGGCCAA 659
||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||
Sbjct 600 TCCGTCTGCTTGCTTCCACTCTACATCTACGCAACTCCTCTTCTCATTTTACTAGGCCAA 659
Query 660 GAACCCGAAATCGCAGAGATCTCTGGCAAATTCACTACACAAATCATCCCTCAAATGTTT 719
||||| ||||| |||||||||||||||| ||| || ||||||||||||||||||||||||
Sbjct 660 GAACCGGAAATTGCAGAGATCTCTGGCAGATTTACAACACAAATCATCCCTCAAATGTTT 719
Query 720 GCGCTCGCTATCAACTTCCCGACTCAGAAGTTTCTCCAGTCACAGAGCAAAGTAGGGATC 779
|||||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 720 GCGCTCGCCATCAATTTCCCAACTCAGAAGTTTCTCCAGTCACAGAGCAAAGTCGGGATC 779
Query 780 ATGGCATGGATCGGTTTCTTCGCTTTGACCCTTCACATTTTCATCCTCTACCTCTTTATA 839
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 780 ATGGCCTGGATCGGTTTCTTCGCTTTGACTCTTCACATTTTCATCCTCTACCTCTTTATA 839
Query 840 AACGTTTTCAAGTGGGGGCTAAACGGTGCAGCGGCTGCATTTGATGTCTCGGCTTGGGGA 899
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 840 AACGTTTTCAAGTGGGGGCTAAACGGTGCAGCGGCTGCGTTTGATGTCTCGGCTTGGGGA 899
Query 900 ATCGCGATCGCGCAGGTTGTTTATGTTGTAGGGTGGTGTAAAGACGGTTGGAAAGGGCTG 959
||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 900 ATCGCAATCGCGCAGGTTGTTTATGTTGTAGGTTGGTGTAAAGACGGTTGGCGAGGGCTG 959
Query 960 TCTTGGTTAGCGTTTCAAGACGTTTGGCCGTTTTTGAAACTGTCGTTTGCGTCTGCGGTT 1019
||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 960 TCTTGGTTAGCGTTTAAAGACGTTTGGCCGTTTCTGAAACTGTCTTTTGCGTCTGCGGTT 1019
Query 1020 ATGCTTTGTCTAGAGATTTGGTACTTCATGACGATCATTGTCTTAACTGGACATCTTGAA 1079
||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1020 ATGCTTTGTCTTGAGATATGGTACTTCATGACGATCATTGTCTTAACCGGACATCTTGAA 1079
Query 1080 GACCCTGTCATAGCCGTTGGATCTCTCTCAATCTGTATGAACATTAATGGATGGGAAGGA 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GACCCTGTCATAGCCGTTGGATCTCTCTCAATCTGTATGAACATTAATGGATGGGAAGGA 1139
Query 1140 ATGTTGTTCATAGGAATCAATGCAGCTATAAGTGTTAGGGTGTCGAATGAGCTAGGATCG 1199
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1140 ATGTTGTTCATAGGAATCAATGCAGCTATAAGTGTTAGAGTGTCGAATGAGCTAGGATCG 1199
Query 1200 GGACATCCACGAGCTGCGAAATACTCCGTGATCGTAACGGTGATAGAGTCTCTCGTCATT 1259
||||||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||
Sbjct 1200 GGACATCCACGAGCTGCAAAATACTCGGTGATCGTAACAGTGATAGAGTCTCTAATCATT 1259
Query 1260 GGAGTAGTGTGTGCAATTGTAATTCTGATAACACGAGATGACTTTGCTGTGATTTTTACG 1319
|||||||||||||||||||||||||| |||||| ||||||| ||||| || |||||||||
Sbjct 1260 GGAGTAGTGTGTGCAATTGTAATTCTCATAACAAGAGATGAGTTTGCAGTAATTTTTACG 1319
Query 1320 GAGAGTGAAGAGATGAGAAAGGCGGTAGCTGATCTTGCGTACCTGCTCGGTATAACGATG 1379
||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1320 GAGAGCCAAGAGATGAGAAAGGCAGTAGCTGATCTTGCGTACCTTCTCGGTATAACGATG 1379
Query 1380 ATTCTCAACAGTTTACAACCAGTTATATCAGGAGTTGCAGTAGGAGGAGGATGGCAAGCA 1439
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1380 ATTCTCAACAGTTTACAACCGGTTATATCAGGTGTTGCAGTAGGAGGAGGATGGCAAGCA 1439
Query 1440 CCGGTGGCTTATATAAACTTGTTTTGTTACTACGCTTTTGGATTACCTCTAGGGTTTTTG 1499
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 CCGGTGGCTTATATCAACTTGTTTTGTTACTACGCTTTTGGATTACCTCTAGGGTTTTTG 1499
Query 1500 TTAGGTTATAAAACAAGCCTTGGCGTACAGGGGATATGGATTGGTATGATATGTGGGACT 1559
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 CTAGGCTATAAAACAAGACTTGGCGTACAGGGGATATGGATTGGTATGATATGTGGGACT 1559
Query 1560 AGTCTTCAGACTCTCATACTTTTGTACATGATCTACATAACCAATTGGAACAAAGAGGTG 1619
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1560 AGTCTTCAGACTCTCATCCTTTTGTACATGATATACATAACCAATTGGAACAAAGAGGTG 1619
Query 1620 GAACAAGCTTCGGAGAGAATGAAACAATGGGGAGCTGGATATGAGAAATTAGAAAAAATA 1679
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 1620 GAACAAGCTTCGGAGAGAATGAAACAATGGGGAGCTGGATACGAGGAATTAGAAAAAATA 1679
Query 1680 GCAACTTAA 1688
|||||||||
Sbjct 1680 GCAACTTAA 1688
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68714801980
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5