BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00355.3
Length=1406
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490530 jgi|Araly1|490530|fgenesh2_kg.6__3664__AT4G00355.1 1310 0.0
Ahg935564 jgi|Araly1|935564|scaffold_403552.1 82.4 8e-15
> Ahg490530 jgi|Araly1|490530|fgenesh2_kg.6__3664__AT4G00355.1
Length=1231
Score = 1310 bits (709), Expect = 0.0
Identities = 970/1087 (89%), Gaps = 54/1087 (5%)
Strand=Plus/Plus
Query 320 ATGGCTGACAAAGATGAAGCAGCGACGCGTGGAAATGATTGGGAAGTTGTTTCTCTTACT 379
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 154 ATGGCTGACAAAGATGAAGCAGCTACGCGTGGAAATGATTGGGAAGTTGTTTCTCTTACT 213
Query 380 GCTTCAGCTTACGCTGCTGCTCCTGGTCCTAAACCAGTAGTGGACTCGAAAGATGATGAT 439
|||||||||||||||||||||||||||||||||||||| || |||| ||| |||||| ||
Sbjct 214 GCTTCAGCTTACGCTGCTGCTCCTGGTCCTAAACCAGTTGTTGACTTGAATGATGATCAT 273
Query 440 CACAAGGAA---GTTACTCCTTGTTACGAAGCTGAGACATCTCATCCCTTATACATGTCT 496
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 274 CACAAGGAACTTGTTACTCCTTGTTACGAAGCTGAGACATCTCATCCTTTATACATGTCT 333
Query 497 CGCCACTTTGTTTTCCCACCAACTGGTCAGCTTG-A-----GAATACTAGTGACCTTACC 550
||||||||||||||||||||||||| |||||||| | ||||||||| ||||||
Sbjct 334 CGCCACTTTGTTTTCCCACCAACTGCTCAGCTTGAACCTCCTCCTACTAGTGAGCTTACC 393
Query 551 GAGGCTAGC------TTAACGGGGTCTCATTGCAAGGAAGGGA-GTGATTTGAGTCTGAA 603
||||||||| |||| ||| |||||||||||||| | | ||||||||| ||| ||
Sbjct 394 GAGGCTAGCAAGAAGATAACCGGGACTCATTGCAAGGAA-GAAGGTGATTTGACTCTCAA 452
Query 604 AGGGTTGGATTTATCAGATGATTTCGGAGGACTTGAGTTTTCCGAGGATAAAGGCAAGAA 663
||||||||||||||| |||||||| |||||||||||||||| ||| || |||||||| ||
Sbjct 453 AGGGTTGGATTTATCTGATGATTTTGGAGGACTTGAGTTTTTCGACGAGAAAGGCAACAA 512
Query 664 AGAAGAAAACATTTACACGACAGCTATG---AGTTCTCTGGACGATGAAAGAGCTATCGG 720
||| |||||||||||||||||||||||| | |||||||||||||||||||||||| ||
Sbjct 513 AGATGAAAACATTTACACGACAGCTATGACTACTTCTCTGGACGATGAAAGAGCTATTGG 572
Query 721 TGGCTCACACGTG--T--A-T----GAACCTGTTGAAGAACCGACCGAGCCTGTTTCTCC 771
||| ||||||||| | | | ||||||||| |||||||||||| |||||| ||||
Sbjct 573 TGGGTCACACGTGTATGAACTGAACGAACCTGTTCAAGAACCGACCGCGCCTGTCGCTCC 632
Query 772 TTCTGATGTTACACTTGATCTGAATCCTA-T-TA-A--A-GAT--G-ATGAGGTAGCAAA 822
||||||||||||| |||||||||||||| | | | | ||| | |||||||||||||
Sbjct 633 ATCTGATGTTACACCTGATCTGAATCCTACTAAAGATGATGATAAGCATGAGGTAGCAAA 692
Query 823 C-TCGCCACCTAGCGAAGAAGCTTGGTGGAAAAGAAGCGTTGCCTCTTTGATTGCCCAAG 881
| | ||| ||| |||||||||| |||||||||||||||| ||| ||||||||||| ||||
Sbjct 693 CGT-GCCTCCTTGCGAAGAAGCCTGGTGGAAAAGAAGCGCTGCGTCTTTGATTGCACAAG 751
Query 882 CGAAAGAAACTAATACAGTTTGGTCCATCTGCATAGCCGCAGCTGTAATGGGAATTGTGA 941
| ||||||||||| || ||||||||||||||||| || |||||||||||||| |||||||
Sbjct 752 CAAAAGAAACTAACACTGTTTGGTCCATCTGCATTGCTGCAGCTGTAATGGGTATTGTGA 811
Query 942 TTCTTGGCCAACATTGGCAACAGGAGAGGTGGCAGATTTTGCAGCAAAAGTGGGAATCAA 1001
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 812 TTCTTGGCCAACATTGGCAACAGGAGAGGTGGCAGATTTTGCAGCAAAGGTGGGAATCAA 871
Query 1002 GCATTGGAAACGAGAAAGCTGGAAGATTGATGGGGCCAATCTCTCGACTAAAACAAGCAT 1061
|||||||||||||||||||||||||||| ||||| || ||||||||||| ||||||||||
Sbjct 872 GCATTGGAAACGAGAAAGCTGGAAGATTAATGGGCCCGATCTCTCGACTGAAACAAGCAT 931
Query 1062 TTGTCGGGGGACAGCGGCGGGATTCATTCATCCGAGCCAGCGCCCAAAACGACCGTTAAA 1121
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 932 TTGTCGGGGGACAGCGGCGGGATTCATTCATCCGAGGCAGCTCCCAAAACGACCGTTAAA 991
Query 1122 TCAA-A-ACAA-AAAGGTGAATTACTTTGATGATGACGATAAGAACAAGAGTAGCTTCTT 1178
|| | | || |||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 992 A-AAGAGAGAAGAAAGGTGATTTACTTTGATGATGACGATAAGAACAAGAGTAGCT-CTT 1049
Query 1179 TGGGGTCGAAAAACATGGATGT--CTGGTGTGTGAATGTGTTTGGTACTTCT-CTTCAGG 1235
|||||||||||||||||||||| ||||||||||||||| || ||||||| | |||||||
Sbjct 1050 TGGGGTCGAAAAACATGGATGTATCTGGTGTGTGAATGT-TT-GGTACTTTTACTTCAGG 1107
Query 1236 TCATGGTTTTTGTACATATTTCTTTGGTGTGAAACAATCATTTACCCATTTCATTATCTC 1295
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1108 TCATGGTTTTTGTACATATTTCTTTGGTGTGAAAAAATCATTTACCCATTTCATTAT-TC 1166
Query 1296 -AATGCCCTATTACTCTCTTTCTCTGTTTATATCATAATCAGATACTCAGTGTCTCCTGT 1354
|||||| ||||| | ||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 1167 CAATGCC-TATTATTA-CTTACTCTCTTTATATCATAATCAGATACTCAGTGTCTCCTGT 1224
Query 1355 TATGTTT 1361
|||||||
Sbjct 1225 TATGTTT 1231
> Ahg935564 jgi|Araly1|935564|scaffold_403552.1
Length=844
Score = 82.4 bits (44), Expect = 8e-15
Identities = 56/62 (90%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 347 CGTGGAAATGATTGGGAAGTTGTTTCTCTTACTGCTTCAGCTTACGCTGCTGCTCCTGGT 406
||||| ||||| |||||||| || || |||||| ||||||||||||||||||||||||||
Sbjct 63 CGTGGGAATGAATGGGAAGTCGTCTCGCTTACTTCTTCAGCTTACGCTGCTGCTCCTGGT 122
Query 407 CC 408
||
Sbjct 123 CC 124
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52564538100
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5