BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G00356.1

Length=156
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg943722 jgi|Araly1|943722|scaffold_604266.1                        237    2e-62


> Ahg943722 jgi|Araly1|943722|scaffold_604266.1
Length=277

 Score =  237 bits (128),  Expect = 2e-62
 Identities = 146/154 (95%), Gaps = 3/154 (2%)
 Strand=Plus/Plus

Query  4    TTATGGATGATACGTTTCTATAATGTGAAATTCAAAGGACCATGCCGAATGAAAAATGAT  63
            |||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||
Sbjct  106  TTATGGATGATACGTTTCCAGAATGTG-AATTCAAAGGACCATGCCGAATGAAAAATGAT  164

Query  64   TGTATCCCGACTTGTGGAGGCAAACCTAGTCGTGCTTTGTGTATTCCTAATCCTAGTGTA  123
            |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  165  TGTATCGCGACTTGTGGAGGCGAACCTAGTCGTGCTTTGTGTATTCCTAATCCTAGTGTA  224

Query  124  GACACTCTTCAATGTTGTTGTCTTTAC-AACTAA  156
            ||||| ||||||||||||||||||| | ||||||
Sbjct  225  GACACCCTTCAATGTTGTTGTCTTT-CTAACTAA  257



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 5079038713


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5