BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00360.1
Length=2090
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943721 jgi|Araly1|943721|scaffold_604265.1 2713 0.0
Ahg918799 jgi|Araly1|918799|scaffold_100080.1 1557 0.0
Ahg935562 jgi|Araly1|935562|scaffold_403550.1 852 0.0
Ahg907042 jgi|Araly1|907042|Al_scaffold_0002_123 396 4e-109
> Ahg943721 jgi|Araly1|943721|scaffold_604265.1
Length=1705
Score = 2713 bits (1469), Expect = 0.0
Identities = 1631/1709 (95%), Gaps = 12/1709 (1%)
Strand=Plus/Plus
Query 163 TATCATTTCATATTC-ATTGATATGGATGTCTCCAACACGATGCTCCTTGTAGCTGTTGT 221
||| ||||| |||| |||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1 TATAATTTC--ATTCAATTGATATGGATGTATCCAACACGATGCTGCTTGTAGCTGTTGT 58
Query 222 TGCAGCTTACTGGCTATGGTTCCAGCGGATCTCAAGGTGGCTAAAGGGTCCACGTGTTTG 281
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||
Sbjct 59 TGCAGCTTACTGGCTATGGTTCCAGCGGATCTCACGATGGCTAAAGGGTCCACGTGTCTG 118
Query 282 GCCAGTTTTGGGCAGTCTTCCGGGTCTGATCGAGCAGCGTGACCGTATGCACGACTGGAT 341
|||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 119 GCCAGTGTTGGGCAGTCTTCCTGGTCTGATCGAGCAGCGTGACCGTATGCACGAGTGGAT 178
Query 342 CACTGAGAACCTCCGTGCGTGTGGCGGCACTTATCAGACATGTATCTGCGCCGTACCTTT 401
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 179 CACTGAGAACCTCCGTGCGTGTGGCGGCACTTACCAGACATGTATCTGCGCCGTGCCTTT 238
Query 402 CTTGGCAAAAAAGCAAGGTCTCGTGACCGTCACGTGCGATCCCAAGAACATCGAACACAT 461
||||||||| |||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 239 CTTGGCAAAGAAGCAAGGTCTCGTGACCGTCACGTGTGACCCCAAGAACATCGAGCACAT 298
Query 462 GCTCAAGACCAGGTTCGACAACTACCCTAAAGGTCCTACGTGGCAAGCCGTGTTCCATGA 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 GCTCAAGACCAGGTTCGACAACTACCCTAAAGGTCCTACGTGGCAAGCCGTGTTCCATGA 358
Query 522 CTTCCTCGGCCAAGGTATCTTCAACTCCGACGGTGACACTTGGCTCTTCCAGCGTAAAAC 581
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CTTCCTCGGCCAGGGCATCTTCAACTCCGACGGTGACACTTGGCTCTTCCAGCGTAAAAC 418
Query 582 CGCCGCTCTTGAATTCACCACCAGGACGTTGAGGCAAGCGATGGGTCGGTGGGTGAACCG 641
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 419 CGCCGCTCTTGAATTCACCACTAGGACGTTGAGGCAAGCGATGGGTCGGTGGGTGAACCG 478
Query 642 GGGAATCAAGCTCCGGTTT-TGTCCAATTCTCGAAACGGCTCAGAACAATTACGAGCCGG 700
|||||| ||||||| |||| ||||| ||||| || |||||||||||||||||||||||||
Sbjct 479 GGGAATTAAGCTCC-GTTTCTGTCCGATTCTTGAGACGGCTCAGAACAATTACGAGCCGG 537
Query 701 TTGATCTCCAAGACTTAATACTACGGCTCACATTCGACAACATTTGCGGTTTAGCATTCG 760
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 538 TTGATCTCCAAGACTTAATACTTCGGCTCACATTCGACAACGTTTGCGGTTTAGCATTCG 597
Query 761 GTAAAGACACTCGAACCTGCGCACCGGGACTTCCCGAGAACGGTTTCGCCTCGGCTTTCG 820
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 598 GTAAGGACACTCGAACCTGCGCACCGGGACTTCCCGAGAACGGTTTCGCCACGGCTTTCG 657
Query 821 ACCGAGCCACCGAAGCTTCTCTCCAGCGGTTTATTCTACCAGAGTTTCTATGGAGGCTGA 880
|||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 658 ACCGAGCCACCGAAGCCTCTCTACAGCGGTTTATTCTACCGGAGTTTCTATGGAGGCTGA 717
Query 881 AGAAATGGCTTGGACTCGGCTTAGAAGTCAGCTTGAGCCGGAGCCTAGGAGAGATCGATG 940
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 718 AGAAATGGCTTGGGCTCGGCTTAGAAGTCAGCTTGAGCCGGAGCTTAGGAGAGATCGATG 777
Query 941 GGTATTTAGATGCTGTCATTAATACACGTAAGCAAGAATTGCTGAGTCAGCGAGAGAGTG 1000
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
Sbjct 778 GGTATTTAGATGCTGTCATTAATACACGTAAGCAAGAATTGCTGAGTCAGCAAGAAAGCG 837
Query 1001 GGGTCCAGCGTCACGACGATCTCCTCTCTCGTTTCATGAAGAAGAAAGACCAGTCGTACA 1060
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 838 GGGTCCAGCGACACGACGATCTCCTCTCTCGTTTCATGAAGAAGAAAGATCAGTCCTACA 897
Query 1061 GCGAGACGTTCTTACGACACGTGGCGCTTAACTTCATCCTAGCTGGACGTGACACGTCAT 1120
||||||||||||||||||||||||| ||||| || ||||| |||||||||||||||||||
Sbjct 898 GCGAGACGTTCTTACGACACGTGGCTCTTAATTTTATCCTTGCTGGACGTGACACGTCAT 957
Query 1121 CAGTAGCGTTGAGCTGGTTTTTCTGGCTCATCACGACGCATCCGACGGTTGAGGATAAGA 1180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 958 CAGTAGCGTTGAGCTGGTTTTTCTGGCTCATCACGACGCATCCGACGGTCGAGGATAAGA 1017
Query 1181 TCGTCCGCGAGATATGCTCCGTTCTGATTGAGACACGTGGAACCGATGTATCGTCGTGGA 1240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 TCGTCCGCGAGATATGCTCCGTTCTGATTGAGACACGTGGAACCGATGTATCGTCGTGGA 1077
Query 1241 CGGCGGAGCCGTTGGAATTCGATGAGGTCGACCGGTTGGTTTACCTGAAGGCCGCGCTCT 1300
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1078 CGGCGGAGCCGTTGGAATTCGATGAGGTGGACCGGTTGGTTTACCTGAAGGCGGCGCTCT 1137
Query 1301 CTGAGACGTTGAGGCTTTACCCGTCGGTGCCGGAAGATTCAAAGCACGTCGTGAACGACG 1360
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1138 CCGAGACGTTGAGGCTTTACCCGTCGGTGCCGGAAGATTCGAAGCACGTCGTGAACGATG 1197
Query 1361 ATATCTTACCGGACGGAACTTTCGTACCGGCGGGATCGTCGGTGACTTATTCGATCTACG 1420
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1198 ATATCTTGCCGGACGGAACTTTTGTACCGGCGGGATCGTCGGTGACTTATTCGATCTACG 1257
Query 1421 CGGCGGGGAGGATGAAGAGCACGTGGGGAGAGGATTG-CTTGGAATTCAAACCGGAGAGG 1479
|||||||||||||||||||||||||||| |||||||| || |||||| || |||||||||
Sbjct 1258 CGGCGGGGAGGATGAAGAGCACGTGGGGCGAGGATTGTCT-GGAATTTAAGCCGGAGAGG 1316
Query 1480 TGGATCTCGCCGGACGATGGAAAATTCGTGAATCACGATCAGTACCGATTCGTGGCGTTT 1539
||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1317 TGGATTTCGCCGGACGATGGGAAATTCGTGAATCACGATCAGTATCGATTCGTGGCGTTT 1376
Query 1540 AACGCCGGACCTAGGATCTGTCTAGGAAAAGATCTAGCGTATCTGCAGATGAAGACGATC 1599
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 AACGCCGGACCAAGGATCTGTCTAGGAAAAGATCTAGCGTATCTGCAGATGAAGACGATC 1436
Query 1600 GCGGCGGCGGTTTTACTCAGGCATAGACTAACGGTGGCGCCGGGACACAAGGTGGAGCAG 1659
|||||||| ||||||||| |||| ||||| ||||||||| ||||||||||||||||||||
Sbjct 1437 GCGGCGGCTGTTTTACTCCGGCACAGACTGACGGTGGCGGCGGGACACAAGGTGGAGCAG 1496
Query 1660 AAGATGTCGTTGACTTTGTTCATGAAGAACGGACTTTTGGTCAACGTGCACAAGAGGGAT 1719
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1497 AAGATGTCGTTGACTTTGTTCATGAAGAACGGACTTCTGGTCAACGTGCACAAGAGGGAT 1556
Query 1720 TTGGAAGTGATGATGAAGAGTCTCGTACCCAAAGAGAGAAACGACGTCGTTGTTCTTAAC 1779
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1557 TTGGAAGTGATGATGAAGAGTCTCGTAACCAAAGAGAGAAACGACGTCGTTGTTCTTAAC 1616
Query 1780 GGAAAATGCAACGGCGGTATCGGTG---AAGGCGTCGCCGTTAATGCGGCTGTGGCGGTT 1836
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1617 GGGAAATGCAACGGCGGTATCGGTGGTGAAGGCGTCGCCGTTAATGCGGCTGTGGCGGTT 1676
Query 1837 GCCGTGTAATGCAGC-TTCTCGGGTTGAT 1864
|| ||||||||| || || ||||||||||
Sbjct 1677 GCGGTGTAATGCGGCATT-TCGGGTTGAT 1704
> Ahg918799 jgi|Araly1|918799|scaffold_100080.1
Length=1705
Score = 1557 bits (843), Expect = 0.0
Identities = 1391/1652 (84%), Gaps = 52/1652 (3%)
Strand=Plus/Plus
Query 193 TCCAACACGATGCTCCTTGTAGCTGTTGTTGCAGCTTACTGGCTATGGTTCCAGCGGATC 252
||||| ||||||| || ||||| || || ||| || |||||||||||| || |||||
Sbjct 30 TCCAATGCGATGCTTCTCGTAGCGGTGGTAACAGGGTATTGGCTATGGTTCAAGAGGATC 89
Query 253 TCAAGGTGGCTAAAGGGTCCACGTGTTTGGCCAGTTTTGGGCAGTCTTCCGGGTCTGATC 312
||| |||||||||||||||||||||| ||||| | ||||| |||||||| ||||||||
Sbjct 90 TCACGGTGGCTAAAGGGTCCACGTGTCTGGCCTCTGTTGGGTAGTCTTCCTGGTCTGATA 149
Query 313 GAGCAGCGTGACCGTATGCACGACTGGATCACTGAGAACCTCCGTGCGTGTGGCGGCACT 372
||||| |||||| | ||||| || |||||||| ||||||||||||||||| || ||||||
Sbjct 150 GAGCAACGTGACAGAATGCATGAATGGATCACCGAGAACCTCCGTGCGTGCGGTGGCACT 209
Query 373 TATCAGACATGTATCTGCGCCGTACCTTTCTTGGCAAAAAAGCAAGGTCTCGTGACCGTC 432
|| ||||| ||||||| ||||| ||||||||||| || ||||||||||||||||| |||
Sbjct 210 TACCAGACTTGTATCTTTGCCGTGCCTTTCTTGGCTAAGAAGCAAGGTCTCGTGACTGTC 269
Query 433 ACGTGCGATCCC-AAGAA-CATCGAACACATGCTCAAGACCAGGTTCGACAACTACCCTA 490
||||| || ||| ||||| | |||||||||||||||||||| ||||||| ||||||||||
Sbjct 270 ACGTGTGA-CCCTAAGAATC-TCGAACACATGCTCAAGACCCGGTTCGATAACTACCCTA 327
Query 491 AAGGTCCTACGTGGCAAGCCGTGTTCCATGA-CTTCCTCGGCCAAGGTATCTTCAACTCC 549
|||||||||| |||||| |||| ||||| || ||| |||||||||||||| |||||||||
Sbjct 328 AAGGTCCTACATGGCAATCCGTCTTCCACGATCTT-CTCGGCCAAGGTATTTTCAACTCC 386
Query 550 GACGGTGACACTTGGCTCTTCCAGCGTAAAACCGCCGCTCTTGAATTCACCACCAGGACG 609
||||||||||| ||||||||||| || ||||||||||||||||||||||| || ||||||
Sbjct 387 GACGGTGACACCTGGCTCTTCCAACGCAAAACCGCCGCTCTTGAATTCACAACAAGGACG 446
Query 610 TTGAGGCAAGCGATGGGTCGGTGGGTGAACCGGGGAATCAAGCTCCGGTTTTGTCCAATT 669
||| ||||||| |||||| | ||||| ||||| ||||| || |||||||| |||||||||
Sbjct 447 TTGCGGCAAGCCATGGGTAGATGGGTAAACCGAGGAATTAAACTCCGGTTCTGTCCAATT 506
Query 670 CTCGAAACGGCTC-AGAAC-AATTACGAGCCGGTTGATCTCCAAGACTTAATACTACGGC 727
|| |||||||||| || | ||| | || |||||||||||||||||||||||||||||||
Sbjct 507 CTTGAAACGGCTCAAG-CCAAATCA-GAACCGGTTGATCTCCAAGACTTAATACTACGGC 564
Query 728 TCACATTCGACAACATTTGCGGTTTAGCATTCGGTAAAGACACTCGAACCTGCGCACCGG 787
|||||||||||||||||||||| || || |||||||| || || ||||||||||||||||
Sbjct 565 TCACATTCGACAACATTTGCGGATTGGCGTTCGGTAAGGATACACGAACCTGCGCACCGG 624
Query 788 GACTTCCCGAGAACGG-TTTCGCCTCGGCTTTCGACCGAGCCACCGAAGCTTCTCTCCAG 846
| |||||||||||||| ||| |||||||| ||||| |||||||| ||||| || || ||
Sbjct 625 GGCTTCCCGAGAACGGCTTT-GCCTCGGCATTCGATCGAGCCACTGAAGCCTCGCTTCAA 683
Query 847 CGGTTTATTC-TACCAGAGTTTCTATGGAGGCTGAAGAAATGGCTTGGACTCGGCTTAGA 905
|||||||| | |||| |||||| | |||| |||||||||||||||||| ||||| |||||
Sbjct 684 CGGTTTAT-CATACCGGAGTTTATGTGGAAGCTGAAGAAATGGCTTGGGCTCGGTTTAGA 742
Query 906 AGTCAGCTTGAGCCGGAGCCTAGGAGAGATCGATGGGTATTTAGATGCTGTCATTAATAC 965
||| ||||||||||| ||| ||||||| ||||||| ||||||| |||||| || |||||
Sbjct 743 AGTAAGCTTGAGCCGAAGCTTAGGAGAAATCGATGAATATTTAGCTGCTGTTATAAATAC 802
Query 966 ACGTAAGCAAGAATTGCTGAGTCAGCGAGAGAGTGGGGTCCAGC-GT--CACGACGATCT 1022
|||||||||||||||| ||||||||| ||| ||||| ||| | | |||||||||||
Sbjct 803 ACGTAAGCAAGAATTGATGAGTCAGCAAGAAAGTGGAACCCACCAGAGACACGACGATCT 862
Query 1023 CCTCTCTCGTTTCATGAAGAAGAAAGACC-AGTCGTACAGCGAGACGTT-CTTACGACAC 1080
|||||| |||||||||| ||||||| ||| | || ||||| || ||||| || | |||
Sbjct 863 CCTCTCGCGTTTCATGATGAAGAAA-ACCGAATCTTACAGTGACACGTTTCTC-CAACAG 920
Query 1081 GTGGCGCTTAACTTCATCCTAGCTGGACGTGACACGTCATCAGTAGCGTTGAGCTGGTTT 1140
|||||||||||||| ||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 921 GTGGCGCTTAACTTTATCCTTGCTGGACGTGACACGTCATCAGTTGCCCTGAGCTGGTTT 980
Query 1141 TTCTGGCTCATCACGACGCATCCGACGGTTGAGGATAAGATCGTCCGCGAGATATGCTCC 1200
|||||||| ||||||| |||||| || || |||||||| |||||||||||||| ||||||
Sbjct 981 TTCTGGCTTATCACGATGCATCCAACCGTCGAGGATAAAATCGTCCGCGAGATCTGCTCC 1040
Query 1201 GTTCTGATTGAGACACGTGGAACCGATGTA--TC--GTCGTGGACGGCGGAGCCGT-T-G 1254
|||||||| ||||||||||| || |||| | || ||| ||||| | |||||| | | |
Sbjct 1041 GTTCTGATCGAGACACGTGGCACTGATG-ACGTCACGTCTTGGACTGAGGAGCC-TCTAG 1098
Query 1255 GAATTCGATGAGGTCGACCGGTTGGTTTACCTGAAGGCCGCGCTCTCTGAGACGTTGAGG 1314
| ||||| || ||||||| ||||||||||||||||| ||| |||| |||||| | |||
Sbjct 1099 GG-TTCGACGAAATCGACCGTTTGGTTTACCTGAAGGCGGCGATCTCGGAGACGCTCAGG 1157
Query 1315 CTTTACCCGTCGGTGCCGGAAGATTC-AAAGCACGTCGTGAACGACGATATCTTACCGGA 1373
|||||||| ||||||||||||||||| ||| ||||||| ||||||||| | ||||||||
Sbjct 1158 CTTTACCCATCGGTGCCGGAAGATTCGAAA-CACGTCGAGAACGACGACGTTTTACCGGA 1216
Query 1374 CGGAACTTTCGTACCGGCGGGATCGTCGGTGACTTATTCGATCTACGCGGCGGGGAGGAT 1433
||| |||||||| ||||||||||| |||||||| || ||||| |||||||||||||||||
Sbjct 1217 CGGGACTTTCGTTCCGGCGGGATCATCGGTGACGTACTCGATTTACGCGGCGGGGAGGAT 1276
Query 1434 GAAGAGC-ACGTGGGGAGAGGATTG-CTTGGAATTCAAACCGGAGAGGTGGATCTCGCCG 1491
||| | | || |||||||| ||||| || |||||| || |||||||| ||||| || |||
Sbjct 1277 GAA-ATCGACTTGGGGAGAAGATTGTCT-GGAATTTAACCCGGAGAGATGGATTTCTCCG 1334
Query 1492 GA-CGATGGAAAATTCGTGAATCACGATCAGTACCGATTCGTGGCGTTTAACGCCGGACC 1550
| ||| |||||||| | ||||||||||| || || ||||||||||| || || |||||
Sbjct 1335 -ATCGACGGAAAATTTATCAATCACGATCAATATCGGTTCGTGGCGTTCAATGCTGGACC 1393
Query 1551 TAGGATCTGTCTAGGA-AAAGATCTAGCGTATCTGCAGATGAAGACGATCGCGGCGGCGG 1609
|||||||| || || |||||||| |||||||| |||||||| || || ||||||||||
Sbjct 1394 AAGGATCTG-CTTGGGGAAAGATCTGGCGTATCTTCAGATGAAAACAATAGCGGCGGCGG 1452
Query 1610 TT-TTACTCAGGCATAGACTAACGGTGGCGCCGGGACACAAGGTGGAGCAGAAGATGTCG 1668
| || ||| | || | || ||||||| |||||||| || ||||||||||||||||||
Sbjct 1453 TGCTT-CTCCGTCACCGGCTTACGGTGGTTCCGGGACATAAAGTGGAGCAGAAGATGTCG 1511
Query 1669 TTGACTTTGTTCATGAAGAACGGACTTTTGGTCAA-CGTGCACAAGAGGGATTTGGAAGT 1727
||||| | || ||||||||||||||| |||| || | ||||||||||||| | |||
Sbjct 1512 TTGACGCTATTTATGAAGAACGGACTTCTGGTGAATC-TGCACAAGAGGGACCTCCAAGG 1570
Query 1728 GATGATGAAGAGTCTCGTACCCAAAGAGAGAAACGACG-TCGTTGTTCTTAACGGAAAAT 1786
||| ||| ||||||| || || || ||| ||||| | || || | ||||| ||||
Sbjct 1571 GATCATGGAGAGTCTAGTGGTGAA-GA-AGAG-CGACGGT-GTCGT-C--AACGGTAAAT 1623
Query 1787 GCAACGGCGGTATCGGTGAAGGCGTCGCCGTT 1818
| ||||||| ||| ||||||||||||||||||
Sbjct 1624 GTAACGGCGTTATTGGTGAAGGCGTCGCCGTT 1655
> Ahg935562 jgi|Araly1|935562|scaffold_403550.1
Length=1619
Score = 852 bits (461), Expect = 0.0
Identities = 1172/1504 (78%), Gaps = 94/1504 (6%)
Strand=Plus/Plus
Query 263 TAAAGGGTCCACGTGTTTGG-CCAGTTTTGGGCAGTCTTCCGGGTCTGATCGAGCAGC-G 320
|||| ||||||||||||||| ||| | ||||| ||||| || ||||| |||||| | | |
Sbjct 101 TAAA-GGTCCACGTGTTTGGCCCA-TATTGGGTAGTCTCCCTGGTCTAATCGAG-AACTG 157
Query 321 TGACCGTATGCACGACTGGATCACTGAGAACCTCCGTGCGTG-TGGCGGCACTTATCAGA 379
|| || ||||||||||||||| | || ||||||||||| || | ||| || |||||||
Sbjct 158 CGAGCGAATGCACGACTGGATCTCCGACAACCTCCGTGCTTGCT-CCGGTACGTATCAGA 216
Query 380 CATGTATCTGCGCCGTACC-TTTCTTGGC-AAAAAAGCAAGGTCTCGTGACCGTCACGTG 437
|||| ||||||||| | || |||| | || || ||| |||||||||||||| ||||||||
Sbjct 217 CATGCATCTGCGCCATTCCGTTTC-TAGCTAAGAAA-CAAGGTCTCGTGACTGTCACGTG 274
Query 438 CGATCCCAAG-AACATCGAACACATGCTCAAG-ACCAGGTTCGACAACTACCCTAAAGGT 495
|||| ||||| ||| |||| || || |||||| | | | || || || | ||||||||||
Sbjct 275 CGAT-CCAAGAAACCTCGAGCATATTCTCAAGAATC-GCTTTGATAATTCCCCTAAAGGT 332
Query 496 CCTACGTGGCAAGCCGTGTTCCATGA-CTTCCTCGGCCAAGGTATCTTCAACTCCGACGG 554
|| |||||||||||||| |||||||| ||| || || ||||| ||||| |||||||||||
Sbjct 333 CCAACGTGGCAAGCCGTTTTCCATGATCTT-CTTGGTCAAGGGATCTTTAACTCCGACGG 391
Query 555 TGACACTTGGCTCTTCCAGCGTAAAACCGCCGCTCTT-GAATTCACCACCAGGACGTTGA 613
|||||| ||||| || ||||| || ||||||||| || || |||||||| ||||| |
Sbjct 392 TGACACGTGGCTTTTTCAGCGCAAGACCGCCGCT-TTGGAGTTCACCACAAGGACACTCC 450
Query 614 GGCAAGCGATGGGTCGGTGGGTGAACCG-GGGAATCAAGCTCCGG-TTTTGTCCAATTCT 671
| ||||| |||| ||| ||||| || | | | |||||||| || ||||| || |||||
Sbjct 451 GTCAAGCCATGGCTCGTTGGGTTAATAGAGCG-ATCAAGCTTAGGTTTTTG-CCTATTCT 508
Query 672 CGAAACGGCTCAGAACAATTAC-GAGCCGGTTGATCTCCAAGACTTAATACTACGGCTCA 730
|||||||||| | | | | |||||| ||||||| ||||| || | || ||||| |
Sbjct 509 TGAAACGGCTCGGCTCGGCT-CTGAGCCGATTGATCTTCAAGATTTGCTTCTTCGGCTTA 567
Query 731 CATTCGACAACATTTGCGG-TTTAGCATTCGGTAAAGACACTCGAACCTGCGCACCGGGA 789
|||| || || || ||||| || | | ||||| |||||| | || || || ||||||||
Sbjct 568 CATTTGATAATATCTGCGGCTTGA-CTTTCGGGAAAGACCCGCGGACTTGTGCACCGGGT 626
Query 790 CTTCCCGAGAACGGTTTCGC-CTCGGCTTTCGACCGAGCCACCGAAGCTTCTCTCCAGCG 848
||||| | |||| ||||| | |||||||| ||||||||||| ||||| || || |
Sbjct 627 CTTCCGGTGAACACATTCGCGGT-AGCTTTCGATCGAGCCACCGAGGCTTCCCTACAAAG 685
Query 849 GTTTAT-TCTACCAGAG-TTTCTATGGAGGCTGAAGAAATGGCTTGGACTCGGCTTAGAA 906
|||||| | | || ||| | | |||||| | | |||| ||||| ||||||||||||||
Sbjct 686 GTTTATAT-TGCCGGAGATAT-TATGGAAGTTCAAGAGGTGGCTCCGACTCGGCTTAGAA 743
Query 907 GTCAGCTTGAGC-CGGAGCCTAGG-AGAGATCGATGGGTATTTAGATGCT--G-TCATTA 961
|||||||||| | | || || || || | ||| ||||| | | || | | ||||
Sbjct 744 GTCAGCTTGA-CAAGAAG-CTTGGTCCAGGTAGATAATTATTT-G-T-CTGAGATTATTA 798
Query 962 ATACACGTAAGCAAGAATTGCTGAGTCAGCGA-GA-GAGTGGGGTCCAGCGTCACGACGA 1019
||||||||||||||| || ||||||||| | | || |||| || | ||||| ||
Sbjct 799 CGACACGTAAGCAAGAAATGATGAGTCAGC-ATAACGA-TGGGAAACA-C--CACGATGA 853
Query 1020 TCTCCTCTCTCGTTTCATGAAGAAGAAAGACCAGTCGTA--CAG-CGAGACGTTCTTACG 1076
|||| | || || ||||| |||||||| || | || || | | |||||| || | |
Sbjct 854 TCTCTTATCGCGGTTCATCAAGAAGAAGGA--A-TCTTACTCCGACGAGACCCTC-CA-G 908
Query 1077 ACACGTGGCGCTTAACTTCATCCTAGCTGGACGTGACACGTCATCAGTAGCGTTGAGCTG 1136
| |||||| || |||||||||||||||||||||||||||||||| || ||| |||||||
Sbjct 909 -CGCGTGGCACTCAACTTCATCCTAGCTGGACGTGACACGTCATCGGTCGCGCTGAGCTG 967
Query 1137 GTTTTTCTGGCTCATCACGAC-GCATCCGACGGTTGAGGATA-AGATCGTCCGCGAGATA 1194
||| |||||| | || ||| | ||| ||||| | ||||||| | ||| |||| |||||
Sbjct 968 GTTCTTCTGGTTGATTACG-CAGCACCCGACTATAGAGGATATA-ATCCTCCGGGAGATC 1025
Query 1195 TGCTCCGTTCTGATTGAGACACGTGG-AACCGATGTATCGTCGTGGA-CGGCGGAGCCG- 1251
||| |||||||||| ||||||||||| | || || ||| |||| || | ||||||
Sbjct 1026 TGCACCGTTCTGATCGAGACACGTGGCGA-TGACGTGGCGTTATGGACCGAC-GAGCCGC 1083
Query 1252 -TTGGAAT-TCGATGAGGTCGACCGGTTGGTTTACCTGAAGGCCGCGCTCTCTGAGACGT 1309
|| | | | || ||| | || || |||||||| || ||||| ||| | || ||||| |
Sbjct 1084 TTTCG--TGT-GAAGAGCTAGATCGTTTGGTTTATCTCAAGGCGGCGTTATCGGAGAC-T 1139
Query 1310 -TGAGGCTTTACCCGTCGGTGCCGGAAGATTC-AAAGCACGTCGTGAACGACGATATCTT 1367
|||||||||| || ||||||||||| ||||| ||| | || |||||| |||||| | ||
Sbjct 1140 CTGAGGCTTTATCCTTCGGTGCCGGAGGATTCGAAA-CGCGCCGTGAAAGACGATGTGTT 1198
Query 1368 ACCGGACGGAAC-TTTCGTACCGGCGGGATCGTCGGTGACTTATTCGATCTACGCGGCGG 1426
|||||||| || ||| || ||||||||||| ||||| ||||||||||| ||| | ||||
Sbjct 1199 GCCGGACGGGACATTT-GTGCCGGCGGGATCTTCGGTTACTTATTCGATTTACTCTGCGG 1257
Query 1427 GGAGGATGAAGAGC-ACGTGGGGAGAGGATTGCTTGGAATTCAAACCGGAGAGGTGGATC 1485
|||||||||| | | || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1258 GGAGGATGAA-ATCGACTTGGGGAGAGGATTGCTTGGAATTCAAACCGGAGAGATGGATC 1316
Query 1486 TCGC---CGGACGATGGAAAATTCGTGAATCACGATC-AGT-ACCGATTCGTGGCGTTTA 1540
|||| |||||| ||| | |||| | ||||| |||| | | | |||||||||||| |
Sbjct 1317 TCGCAATCGGACGGTGGGAGATTCATCAATCATGATCCATTTAA--ATTCGTGGCGTTCA 1374
Query 1541 ACGCCGGACCTAGGATCTGTCTAGGAAAAGATCTAGCGTATCTGCAGATGAAGA-CGATC 1599
| || || ||||||||||||||||| || ||||| || ||||| || ||||| | | ||
Sbjct 1375 ATGCTGGCCCTAGGATCTGTCTAGGTAAGGATCTGGCTTATCTACAAATGAA-ATCAATT 1433
Query 1600 GCGGCGGCGGTTTTACT-CAGGCATAGACTAACGGTGGCGCCGGGACACAAGGTGGAGCA 1658
|||||||||||||| || | | || || | ||||||| | |||| || |||||||||||
Sbjct 1434 GCGGCGGCGGTTTTGCTTC-GTCACCGATTGACGGTGGTGACGGGGCATAAGGTGGAGCA 1492
Query 1659 GAAGATGTCGTTGACTTTGTTCATGAAGAACGGACTTTTGGTCAACGTGCAC-AAGAGGG 1717
|||||||||||| ||| | ||||||||| |||| |||||||| ||||| ||| || |||
Sbjct 1493 GAAGATGTCGTTAACTCTATTCATGAAGTACGGTCTTTTGGTTAACGTCCACGAAC-GGG 1551
Query 1718 ATTT 1721
||||
Sbjct 1552 ATTT 1555
> Ahg907042 jgi|Araly1|907042|Al_scaffold_0002_123
Length=1650
Score = 396 bits (214), Expect = 4e-109
Identities = 1081/1482 (73%), Gaps = 129/1482 (9%)
Strand=Plus/Plus
Query 263 TAAAGGGTCCACGTGTTTGGCCAGTT-TTGGGCAGTCTTCCGGGTCTGATCGAGC-AGCG 320
|||| ||||||||||| ||||| || ||||||||||||| | || ||| | | | ||
Sbjct 81 TAAA-GGTCCACGTGTCTGGCC-CTTAGTGGGCAGTCTTCCAGCACTCATC-A-CAAACG 136
Query 321 -TGACCGTATGCACGACTGGATCACTGAGAACCTCCGTGCGTGTGGCGGCACTTATCAGA 379
| |||| |||||||||| ||| | || |||||||| ||| ||||| || || || |
Sbjct 137 CTCACCGCATGCACGACTTCATCGCCGATAACCTCCGCATGTGCGGCGGTACGTACCAAA 196
Query 380 CATGTATCTGCGCCG-TACCTTTCTTGGC-AAAAAAGCAAGGTCTCGTGACCGTCACGTG 437
| || || | | ||| | || |||||||| || ||| ||||||| |||||| || |||||
Sbjct 197 CGTGCATATTC-CCGATCCCGTTCTTGGCTAAGAAA-CAAGGTCACGTGACTGTTACGTG 254
Query 438 CGATCCC-AAGAA-CATCGAACACATGCTCAAGACCAGGTTCGACAACTACCCTAAAGGT 495
|| ||| ||||| | | || || || | ||| || ||||||| || ||||| || |||
Sbjct 255 TGA-CCCGAAGAATC-TGGAGCATATTTTGAAGTCCCGGTTCGATAATTACCCGAAGGGT 312
Query 496 CCTACG-TGGCAAGCCGTGTTCCATGACT-TCCTCGGCCAAGGTATCTTCAACTCCGACG 553
|||| | |||||| | || ||||| || | | | || | || ||||| || || || |
Sbjct 313 CCTA-GCTGGCAATCAGTCTTCCACGA-TCTATTAGGAGATGGGATCTTTAATTCAGATG 370
Query 554 GTGACACTTGGCTCTTCCAGCGTAAAACCGCCGCTCTT-GAATTCACCACCA-GGACG-T 610
||||||| |||| || |||||||| || || || || || || || | || | ||| |
Sbjct 371 GTGACACGTGGCGGTTTCAGCGTAAGACGGCTGC-ATTGGACTTTACTA-CACGTACGCT 428
Query 611 TGAGGCAAGCGATGGGTCGGTGGG-TGAACCGGGGAATCAAGCTCCGGTTTTGT-CCAAT 668
| | ||||| |||| ||| |||| || | || | |||||| || || | || || ||
Sbjct 429 T-CGCCAAGCCATGGCTCGTTGGGTTG-ATCGAGCCATCAAGAACC-GTCTCGTGCCGAT 485
Query 669 TCTCGAAACGGCTCA-GA-AC-AATTACGAGCCGGTTGATCTCCAAGACT-TAATACTAC 724
||| ||| ||||| | || | | | |||||| | ||||| ||||| | | | |||
Sbjct 486 TCTTGAATCGGCT-ATGAGTCGAGCT--GAGCCGATCGATCTTCAAGA-TGTTCTTTTAC 541
Query 725 GGCTCACATTCGACAACATTTGCGGTTTAGCATTCGGTAAAGA-CACTCGAAC-CTGCGC 782
||||||||||||| ||||||||||| ||| | ||||| ||||| | | ||||| || | |
Sbjct 542 GGCTCACATTCGATAACATTTGCGGCTTAACCTTCGGCAAAGATC-CACGAACACT-CTC 599
Query 783 ACCGGGAC-TTCCCGAGAACGGTTTCGC-CTCGGCTTTCGACCGAGCCACCGAAGCTTCT 840
||| |||| |||||||||| || ||||| | |||||| || ||||||||||||| |
Sbjct 600 ACC-GGACTTTCCCGAGAATGGATTCGCGGT-GGCTTTTGATGGAGCCACCGAAGCCACA 657
Query 841 CTCCAGCGGTTTATTC-TACCAGAGTTTCTATGGAGGCTGAAG-AAATGGCT-TGGACTC 897
|| || ||||||| || | || || ||| | |||| | || || |||||||| || |||
Sbjct 658 CTTCAACGGTTTA-TCATGCCGGAATTTATTTGGAAGATG-AGAAAATGGCTACGG-CTC 714
Query 898 GGCTTAGAAGTCA-GCT-TGAGCCGGAGCCTAGGAGAGATCGATGGGTATTTA--GATGC 953
||||| | || | | | ||||||| || | | || | || ||| || ||| || |
Sbjct 715 GGCTT-GGAG-GATGATATGAGCCGAAG-C-ATCAGCCA-CG-TGGATAATTACTTAT-C 767
Query 954 --TG-TCATTAATACACGTAAGCAAGAATT-GCTGAGTCAGCGA-GAGAGTGGGGTCCAG 1008
| |||||||||||||||||| ||||| | ||||||| | | ||| | || |||
Sbjct 768 AGAGATCATTAATACACGTAAGCTCGAATTAG-TGAGTCAACAACAAGA-T-GGATCC-- 822
Query 1009 CGTCACGACGATCTCCTCTCTCGTTTCATGAAGAAGAAAGACCAGTCGTACAGC-GAGAC 1067
|| ||||||||||| | || || ||||||||||| ||| | |||| ||| | || |
Sbjct 823 CGCCACGACGATCTATTGTCACGGTTCATGAAGAA-AAA-A-GAGTCTTAC-TCGGATAA 878
Query 1068 GT-TCTTACGACACGTGGCGCTT-AACTTCATCCTAGCTGGACGTGACACGTCATCAGTA 1125
| ||||| | ||| |||| || || ||||||||||||||||||||||||||||| |||
Sbjct 879 ATATCTTA-AATACGCGGCG-TTAAATTTCATCCTAGCTGGACGTGACACGTCATCGGTA 936
Query 1126 GCGT-TGAGCTGGTTTTTCTGGCTCATCACGACGCATCCGACG-GTTGAGGATAAGATCG 1183
|| | |||| ||||| |||||| | ||| | | | || || || || || || |||
Sbjct 937 GC-TATGAGTTGGTTCTTCTGGTTGGTCA-GTCTTAACCCTCGAGTCGAAGAAAAAATCA 994
Query 1184 TC-CGCGAGATATGCTCCGTTCTGATTGAGACACGTGGAACCGATGT-ATCGTCGTGGAC 1241
| | |||||| ||| |||||||||| |||||||||| ||| |||| | || ||||||
Sbjct 995 TAAC-CGAGATCTGCACCGTTCTGATCAAGACACGTGGCACCAATGTGA-CGAAGTGGAC 1052
Query 1242 GGCGGAGCCGTTGGAA-TT-CGATGAGGTCGACCGGTTGGTTTACCTGAAGGCCGCGCTC 1299
| ||||| || || || ||| || | |||| |||||| ||| |||| || || |
Sbjct 1053 CGATGAGCCATT--AACTTTCGACGAAATTGACCAGTTGGTATACTTGAAAGCGGCATTG 1110
Query 1300 TCTGAGACGTTGAGGCTTTACCCGTCGGTGCCGGAAGATTCAAAGCACGTCGT-GAACGA 1358
|| || || |||||||| || || |||||||||||||||||||| ||| || | | |
Sbjct 1111 TCGGAAACATTGAGGCTATATCCATCGGTGCCGGAAGATTCAAAATTCGTTGTTGC-CAA 1169
Query 1359 CGATATCTTACCGGACGGAAC-TTTCGTACCGGCGGGATCGT-CGGTGACTTATTCGATC 1416
|||| | |||||||||||||| ||| || || | ||||| || | || ||||||||
Sbjct 1170 CGATGTTTTACCGGACGGAACATTT-GTTCCATCCGGATCAAACGTT-ACATATTCGATA 1227
Query 1417 TACGCGGCGGGGAGGATGAAGAG-CACGTGGGGAGAGGATTG-CTTGGAATTCAAACCGG 1474
|| ||| ||| | ||||| | || ||||| || ||||| || | | || |||||||
Sbjct 1228 TATTCGGTTGGGCGTATGAA-ATTCATTTGGGGTGAAGATTGTCTCG-AGTTTAAACCGG 1285
Query 1475 AGAGGTGGATCTCGCCGGACGAT-GGAA--A-AT-TCGTGAATCACGATCAGTACCGATT 1529
| || ||| | | | ||| | || | | || | || || | | | | ||| |||
Sbjct 1286 AAAGATGG-T-TAGA-GGAAAACCGGGACGAGATAT-GT-AA-C-C-A--A-TACAAATT 1334
Query 1530 CGTGGCGTTTAACGCCGGACCTA-GGATCTGTCTAGGAAAAGATCT-AGCGTATCT-GCA 1586
||| || || || ||||| || | |||| |||||||| ||||| || ||| || || |||
Sbjct 1335 CGTAGCATTCAATGCCGGTCC-ACGGATTTGTCTAGGCAAAGA-CTTAGCTTA-CTTGCA 1391
Query 1587 GATGAAGA-CGATCGCGGCGGCGGTTTTACTCAGGCATAGACTAACGGTGGCGCCGGGAC 1645
|||||| | | || | || || |||| ||| ||||| | || |||||||| |||||||
Sbjct 1392 GATGAA-ATCAATTACTGCTTCGATTTTGCTCCGGCATCGGCTGACGGTGGCTCCGGGAC 1450
Query 1646 A-CAAGGTGGAGCAGAAGATGTCGTTGACTTTGTTCATGAAG 1686
| | || |||||||||||||||| ||||| ||||||||||||
Sbjct 1451 ATCGAG-TGGAGCAGAAGATGTCCTTGACGTTGTTCATGAAG 1491
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78618265680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5