BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00400.1
Length=1872
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490527 jgi|Araly1|490527|fgenesh2_kg.6__3661__AT4G00400.1 2451 0.0
Ahg918798 jgi|Araly1|918798|scaffold_100079.1 1386 0.0
> Ahg490527 jgi|Araly1|490527|fgenesh2_kg.6__3661__AT4G00400.1
Length=1804
Score = 2451 bits (1327), Expect = 0.0
Identities = 1481/1558 (95%), Gaps = 0/1558 (0%)
Strand=Plus/Plus
Query 48 TTTTTGCTCTCTGTTCTTTAGAACTGCCATTAACgagagtgagagagagagaCACACACA 107
||| |||||||||||||||||| | |||||||||||||| |||||||||||| | | ||
Sbjct 1 TTTGTGCTCTCTGTTCTTTAGAGCCGCCATTAACGAGAGAGAGAGAGAGAGAGAGAGACT 60
Query 108 CAGCGAGTGAAAATGTCTCCGGAGAAGAAGAGTCAAAACTTCCCTCCAATAACGGAATGC 167
|||||| | ||||||||| ||||||||||||||||| || ||||| ||||||||||||
Sbjct 61 TGGCGAGTTATAATGTCTCCCGAGAAGAAGAGTCAAAATTTTCCTCCGATAACGGAATGC 120
Query 168 AGAGACGGAGAGTACGATTCGATAGCCGCCGATCTTGACGGGACTCTGCTTCTCTCAAGA 227
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 121 AGAGACGGAGAGTACGATTCGATCGCCGCCGATCTCGACGGGACTCTGCTTCTCTCAAGA 180
Query 228 AGCTCCTTCCCTTACTTCATGCTCGTCGCTGTTGAAGCTGGAAGCCTTTTACGTGGACTA 287
||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 181 AGCTCGTTCCCTTACTTCATGCTCGTCGCCGTTGAAGCTGGAAGCCTTTTCCGTGGACTA 240
Query 288 ATCCTCCTTCTCTCGTTACCATTCGTCATTATCTCTTACCTATTCGTATCCGAATCTCTT 347
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 241 ATCCTCCTTCTCTCGTTACCATTCGTCATCGTTTCTTACCTATTCGTATCCGAATCTCTT 300
Query 348 GGTATCCAGATCCTCATCTTCATCTCATTCGCTGGTCTCAAAATCCGCGATATCGAACTT 407
|| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 301 GGAATCCACATCCTCATCTTCATCTCCTTCGCTGGTCTCAAAATCCGCGATATCGAACTC 360
Query 408 GTCTCTCGCGCAGTTCTTCCACGGTTTTACGCGGCGGATGTGAGGAAAGACAGTTTTGAG 467
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 361 GTCTCTCGCGCAGTTCTTCCACGGTTTTATGCGGCGGATGTGAGGAAAGACAGTTTTGAT 420
Query 468 GTGTTTGATAAGTGTAAGAGAAAAGTGGTAGTGACGGCGAATCCGATTGTGATGGTGGAG 527
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 421 GTGTTTGATAAGTGTAAGAGGAAAGTGGTAGTGACGGCGAATCCGATAGTGATGGTGGAG 480
Query 528 GCGTTTGTGAAGGATTATCTTGGAGGTGATAAAGTTTTGGGAACAGAGATTGAAGTTAAC 587
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 481 GCGTTTGTGAAGGATTATCTTGGAGGTGATAAAGTTTTGGGAACAGAGATTGAAGTCAAC 540
Query 588 CCTAAAACCAATAGAGCCACTGGATTTGTGAAGAAGCCTGGTGTTCTTGTTGGTGATCTT 647
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CCCAAATCCAATAGAGCCACTGGATTTGTGAAGAAGCCTGGTGTTCTTGTTGGTGATCTT 600
Query 648 AAGAGGTTAGCCATTTTAAAAGAGTTTGGTAACGAATCACCTGATCTCGGCCTCGGTGAT 707
|||||| |||||||||| |||||||||||| || ||||||| ||||||||||||||||||
Sbjct 601 AAGAGGCTAGCCATTTTGAAAGAGTTTGGTGACAAATCACCCGATCTCGGCCTCGGTGAT 660
Query 708 CGAACCTCTGATCATGATTTCATGTCTCTCTGCAAGAAAGGTTACATGGTTCATGCGACC 767
|||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||| |
Sbjct 661 CGAACCTCTGATCACGATTTCATGTCCCTCTGCAAGAAAGGCTACATGGTTCATGCGAGC 720
Query 768 AAGTCAGCCACAACGATTCCAAAAGAACGCTTAAAGAACCGCATAGTCTTCCATGATGGG 827
|||||||||||||| |||||||||||||| ||||||||||| ||||||||||| || |||
Sbjct 721 AAGTCAGCCACAACAATTCCAAAAGAACGTTTAAAGAACCGTATAGTCTTCCACGACGGG 780
Query 828 CGTTTAGCGCAACGTCCAACTCCGTTAAACGCCATTATCACATACCTATGGCTTCCTTTT 887
|||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||
Sbjct 781 CGTTTAGCGCAACGTCCAACGCCCTTAAACGCCATTATCACATACCTATGGCTTCCCTTT 840
Query 888 GGTTTCATCCTCTCCATCATTCGCGTCTACTTCAACCTCCCTTTACCTGAAAGATTTGTC 947
|||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 841 GGTTTCATACTCTCCATCATTCGCGTCTACTTCAACCTCCCTTTACCTGAACGCTTTGTC 900
Query 948 CGTTACACTTACGAGATGCTCGGGATCCACTTAACCATTCGTGGTCATCGTCCTCCACCT 1007
|||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 901 CGTTACACCTACGAGATTCTCGGGATCCACTTAACCATTCGTGGCCATCGTCCTCCACCT 960
Query 1008 CCTTCCCCTGGAACTCTTGGCAACCTCTATGTCCTTAACCACCGTACCGCGCTTGATCCC 1067
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CCTTCCCCCGGAACTCTTGGCAACCTCTATGTCCTTAACCACCGTACCGCGCTTGATCCC 1020
Query 1068 ATCATCGTTGCTATTGCTCTTGGACGTAAGATCTGTTGCGTCACTTACAGTGTCTCTCGT 1127
||||||||||| |||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 1021 ATCATCGTTGCCATTGCTCTTGGACGCAAGATCTGTTGTGTTACTTACAGTGTCTCTCGT 1080
Query 1128 CTCTCCCTTATGCTTTCTCCTATTCCTGCTGTTGCCCTCACCCGTGACCGTGCCACCGAT 1187
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1081 CTCTCCCTTATGCTTTCTCCTATTCCTGCTGTTGCCCTCACCCGTGACCGTGTCACCGAT 1140
Query 1188 GCTGCCAACATGAGAAAACTTCTCGAGAAAGGCGACTTGGTGATATGTCCGGAAGGCACG 1247
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 GCTGCCAACATGAGAAAACTTCTCGAGAAAGGCGACTTGGTGATATGTCCGGAAGGCACA 1200
Query 1248 ACGTGTAGAGAAGAGTATCTACTGAGATTTAGCGCTCTATTCGCAGAGCTAAGCGACCGG 1307
||||| |||||||||||||| ||||||||||||||||||||| ||||||| || ||||||
Sbjct 1201 ACGTGCAGAGAAGAGTATCTTCTGAGATTTAGCGCTCTATTCTCAGAGCTTAGTGACCGG 1260
Query 1308 ATTGTGCCAGTAGCGATGAACTGTAAACAAGGAATGTTCAACGGGACCACAGTTAGGGGT 1367
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1261 ATTGTGCCAGTAGCGATGAACTGTAAACAAGGAATGTTCAACGGGACCACAGTGAGGGGT 1320
Query 1368 GTGAAGTTTTGGGACCCTTACTTCTTCTTCATGAACCCAAGACCAAGCTATGAAGCCACT 1427
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1321 GTGAAGTTCTGGGACCCTTACTTCTTTTTCATGAACCCAAGACCAAGCTATGAAGCCACT 1380
Query 1428 TTCTTGGATCGTTTGCCTGAAGAAATGACTGTCAACGGTGGTGGCAAGACTCCTATAGAG 1487
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1381 TTCTTGGATCGTTTGCCTGAAGAAATGACTGTCAACGGTGGCGGCAAGACTCCTATAGAG 1440
Query 1488 GTGGCTAATTACGTCCAGAAAGTTATCGGCGCGGTTTTGGGCTTCGAATGCACCGAACTT 1547
||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1441 GTGGCCAATTACGTCCAGAAAGTTATTGGCGCGGTCTTGGGCTTCGAATGCACCGAACTT 1500
Query 1548 ACTCGCAAGGATAAATATCTTTTGCTTGGAGGTAATGACGGCAAGGTGGAGTCTATCA 1605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 ACTCGCAAGGATAAATATCTTTTGCTTGGAGGTAATGACGGCAAGGTGGAGTCTATCA 1558
> Ahg918798 jgi|Araly1|918798|scaffold_100079.1
Length=1549
Score = 1386 bits (750), Expect = 0.0
Identities = 1272/1522 (84%), Gaps = 43/1522 (3%)
Strand=Plus/Plus
Query 117 AAA-ATGTCTCCGGAGAAGAAGAGTCAAAACTTCCCTCCAATAACG-GAATG-CAGAGAC 173
||| |||||||||| ||||||||| | || || ||||| |||| | || || | || |
Sbjct 17 AAACATGTCTCCGGCGAAGAAGAGCCGAAGTTTTCCTCCGATAA-GCGAGTGTAAAAG-C 74
Query 174 GGAGAGTACGATTCGATAGCCGCCGATCTTGACGGGACTCTGCTTCTCTCAAGAAGCTCC 233
||||||| |||||||| || || ||||| |||||||||||||||||||||||||||||
Sbjct 75 AGAGAGTATGATTCGATCGCTGCGGATCTCGACGGGACTCTGCTTCTCTCAAGAAGCTCT 134
Query 234 TTCCCTTACTTCATGCTCGTCGCTGTTGAAGCTGGAAGCCTTTTACGTGGACTAATCCTC 293
||||||||||||||||||||||| ||||||| || || || || |||||| | |||||
Sbjct 135 TTCCCTTACTTCATGCTCGTCGCCATTGAAGCAGGTAGTCTCTTCCGTGGATTGATCCTT 194
Query 294 CTTC--TCTCGTTACCATTCGTCATTATCTCTTACCTATTCGTATCCGAATCTCTTGGTA 351
|||| |||| || ||| ||||||| ||| |||| || ||||| ||||||||||| || |
Sbjct 195 CTTCTTTCTC-TTCCCA-TCGTCATCATCGCTTATCTCTTCGTCTCCGAATCTCTCGGAA 252
Query 352 TCCAGATCCTCATCTTCATCTCATTCGCTGGTC-TCAAAATCCGCG-ATATCGAACTTGT 409
|||| ||||| |||| |||||| ||||| || | ||||||| | | | |||||||| ||
Sbjct 253 TCCAAATCCTTATCTACATCTCCTTCGCCGG-CATCAAAAT-CAAGAACATCGAACTCGT 310
Query 410 CTCTCGCGCAGTTCTTCCACGGTTTTACGCGGCGGATGTGAGGAAAGACAGTTTTGAGGT 469
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 311 CTCTCGCGCCGTTCTTCCACGGTTTTACGCGGCGGATGTGAGGAAAGATAGTTTTGAGGT 370
Query 470 GTTTGATAAGTGTAAGAGAAAAGTGGTAGTGACGGCGAATCCGATTGTGATGGTGGAGGC 529
||||||||| || ||||| |||||||| || || ||||||||||| |||||||||||| |
Sbjct 371 GTTTGATAAATGCAAGAGGAAAGTGGTGGTTACTGCGAATCCGATAGTGATGGTGGAGCC 430
Query 530 GTTTGTGAAGGATTATCTTGG-AGGTGATAAAGTTTTGGGAACAGAGATTGAAGTTAACC 588
|| || ||||| ||| |||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 431 ATTCGTCAAGGACTAT-TTGGGAGGAGATAAAGTTTTGGGAACAGAGATTGAAGTTAACC 489
Query 589 CTAAAACCAAT-AGAGCCACTGGATTTGTGAAGAAGCCTGGTGTTCTTGTTGGTGATCTT 647
| ||||||| | | ||||||||| ||||| || |||||||||||||||||||||||| ||
Sbjct 490 CCAAAACCA-TGAAAGCCACTGGGTTTGTTAAAAAGCCTGGTGTTCTTGTTGGTGAT-TT 547
Query 648 -AAGAGGTTAGCCATTTTAAAAGAGTTTGGT-AACGAATCACCTGATCTCGGCCTCGGTG 705
||||| ||||| || || |||||||| || || |||||||| ||||| || |||||||
Sbjct 548 GAAGAGATTAGCAATCTTGAAAGAGTTCGGCGAA-GAATCACCGGATCTTGGACTCGGTG 606
Query 706 ATCGAACCTCTGATCATGATTTCATGTCTC-TCTGCAAGAAAGGTTACATGGTTCATGCG 764
| || ||||| ||||| ||||||||||| | | |||||| ||||||||||||| |||| |
Sbjct 607 ACCGGACCTCCGATCACGATTTCATGTC-CATTTGCAAGGAAGGTTACATGGTGCATGAG 665
Query 765 ACCAAGTCAGCCACAACGATTCCAAA-AGAACG-CTTAAAGAACCGCATAGTCTTCCATG 822
||||| ||||||||||| | ||| | ||| || || || |||||||||| ||||||| |
Sbjct 666 ACCAAATCAGCCACAAC-AGTCCCTATAGAGCGTCTCAA-GAACCGCATAATCTTCCACG 723
Query 823 ATGGGCGT-TTAG-CGCAACGTCCAACTCCGTTAAACGCCATTA-TCACATACCTATGGC 879
|||| ||| || | | |||||||| || || ||||||||| ||| ||| ||||| ||||
Sbjct 724 ATGGCCGTCTT-GTC-CAACGTCCGACGCCATTAAACGCC-TTAATCATTTACCTTTGGC 780
Query 880 TTCCTTTTGGTTTCATCCTCTCCATCATTC-GCGTCTACTTCAACCTCCCTTTACCTGAA 938
||||||| || ||||| ||||| ||| ||| ||||||||||||||||||||||||| |||
Sbjct 781 TTCCTTTCGGCTTCATGCTCTCTATC-TTCCGCGTCTACTTCAACCTCCCTTTACCCGAA 839
Query 939 AGATTTGTCCGTTACACTTACGAGATGCTCGGGATCCACTTAACCATTCGTGGTCATCGT 998
| || || || |||||||||||||| ||||| || ||| | || || ||||| || |||
Sbjct 840 CGCTTCGTTCGCTACACTTACGAGATCCTCGGCATTCACCTCACAATCCGTGGCCACCGT 899
Query 999 CCTCCACCTCCTTCCCCTGG-AA-CTCTTGGCAACCTCTATGTCCTTAACCACCGTACCG 1056
||||| ||||||||||| || || | || || |||||||| |||||||||||||| ||||
Sbjct 900 CCTCCCCCTCCTTCCCCCGGCAAAC-CT-GGAAACCTCTACGTCCTTAACCACCGCACCG 957
Query 1057 CGCTTGATCCCATCATCGTTGCTATTGCTCTTGGACGTAAGATCTGTTGCGTCACTTACA 1116
| ||||| ||||| ||| | || |||||||| || ||||||||| || |||||||| |
Sbjct 958 CCCTTGACCCCATTATCATCGCCATTGCTCTCGGCCGTAAGATCACATGTGTCACTTATA 1017
Query 1117 GTGTCTCTCGTCTCTCCCTTATGCTTTCTCCTATTCCTGCTGTTGCCCTCACCCGTGACC 1176
|||||||||| |||||||| ||||| || || || ||||||||||| || ||||| ||||
Sbjct 1018 GTGTCTCTCGCCTCTCCCTGATGCTCTCACCCATCCCTGCTGTTGCTCTGACCCGAGACC 1077
Query 1177 GTGCCACCGATGCTGCCAACATGAGAAAACTTCTCGAGAAAGGCGACTTGGTGATATGTC 1236
||| | | ||||| ||| ||||||| |||| ||||||||||| || |||||||| ||||
Sbjct 1078 GTGTCGCTGATGCAGCCCGCATGAGACAACTCCTCGAGAAAGGTGATTTGGTGATCTGTC 1137
Query 1237 CGGAAGGCACGACGTGTAGAGAAG-AGTATCTACTGAGATTTAGCGCTCTATTCGCAGAG 1295
| |||||||| |||||||||||| | |||||||| ||||| || |||||||| || |||
Sbjct 1138 CTGAAGGCACAACGTGTAGAGAACCA-TATCTACTAAGATTCAGTGCTCTATTTGCGGAG 1196
Query 1296 CTAAGCGACCGGATTGTGCCAGTAGCGATGAACTGTAAACAAGGAATGTTCAACGGGACC 1355
|| ||||||||||| ||||| || || |||||||| || ||||| ||||||||||||||
Sbjct 1197 CTGAGCGACCGGATCGTGCCTGTGGCCATGAACTGCAAGCAAGGGATGTTCAACGGGACG 1256
Query 1356 ACAGTTAGGGGTGTGAAGTTTTGGGACCCTTACTTCTTCTTCATGAACCCAAGACCAAGC 1415
||||| || |||||||| || ||||| || |||||||||||||||||||| |||| |||
Sbjct 1257 ACAGTAAGAGGTGTGAAATTCTGGGATCCGTACTTCTTCTTCATGAACCCTCGACCTAGC 1316
Query 1416 TATGAAGCCACTTTCTTGGATCGTTTGCCTGAAGAAATGACTGTCAACGGTGGTGGCAAG 1475
|| || |||||||||||||| |||||||| ||||||||||| || |||||||||||||||
Sbjct 1317 TACGAGGCCACTTTCTTGGACCGTTTGCCCGAAGAAATGACGGTAAACGGTGGTGGCAAG 1376
Query 1476 ACTCCTATAGAGGTGGCTAATTACGTCCAGAAAGTTATCGGCGCG-GTTTTGGGCTTCGA 1534
|||||| | ||||||||||||||||| ||||| || ||| | | | |||||||| |||||
Sbjct 1377 ACTCCTTTTGAGGTGGCTAATTACGTTCAGAAGGTGATCAGTG-GAGTTTTGGGGTTCGA 1435
Query 1535 ATGCACCGAACTTACTCGCAAGGATAAATATCTTTTGCTTGGAGGTAATGACGGCAAGGT 1594
|||||| ||||| || | |||||||| ||||| ||||||||||| || || || |||||
Sbjct 1436 ATGCACTGAACTCACAAGGAAGGATAAGTATCTGTTGCTTGGAGGCAACGATGGAAAGGT 1495
Query 1595 GGAGTCTATCAACAACACCAAG 1616
||||||||||| || ||||||
Sbjct 1496 TGAGTCTATCAATAAGACCAAG 1517
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70314592270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5