BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00420.2
Length=1052
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920490 jgi|Araly1|920490|scaffold_101771.1 826 0.0
Ahg491431 jgi|Araly1|491431|fgenesh2_kg.7__864__AT4G32760.1 130 2e-29
> Ahg920490 jgi|Araly1|920490|scaffold_101771.1
Length=618
Score = 826 bits (447), Expect = 0.0
Identities = 553/604 (92%), Gaps = 7/604 (1%)
Strand=Plus/Plus
Query 279 TCAACGATGGATCTTCCTCCTCCAGAGTCTTCATCAAATCCCATATCTTCCTTCTCTGTG 338
||||||||| ||||| ||||||||||||||||| ||||||||| ||||||| |||||||
Sbjct 17 TCAACGATGTATCTTACTCCTCCAGAGTCTTCACCAAATCCCACCTCTTCCTCCTCTGTG 76
Query 339 -GCT-C-AAAAGAGGATGTTGCTACAGAGATGCGAAAGTAAGTTTAAGATAAGGAAGCTG 395
| | | ||||||||||| |||||||||||||||||||| ||||||| |||||||||||
Sbjct 77 AGATGCGAAAAGAGGATGATGCTACAGAGATGCGAAAGTGGGTTTAAGTTAAGGAAGCTG 136
Query 396 AACGATACTGTCGAAGAAGACAATGTCACGCAGATGGAGCCAAACTTTACACTTGAGAAC 455
|| ||| |||| ||||||||||||||||||||||||||| ||||| | |||| ||||||
Sbjct 137 AATGATGCTGTTGAAGAAGACAATGTCACGCAGATGGAGTCAAACATCACACATGAGAAA 196
Query 456 ACTCTTGTTTCCGAACCAGAAGCAGATTTGAGGCCTCACACAACTGAGCCCACTACTGAA 515
||||||||||||||||||||||||| |||| ||||||| ||||| |||||||| ||||||
Sbjct 197 ACTCTTGTTTCCGAACCAGAAGCAGGTTTGGGGCCTCAAACAACAGAGCCCACAACTGAA 256
Query 516 GAAGAAACTCAGAGATCTTCAGCCAAATCACAGTTGTATAATTTATGTAGTGTGAGGCAT 575
||||| ||||| ||||| ||||||||||||||||||||||| || |||||||||||||||
Sbjct 257 GAAGAGACTCAAAGATCGTCAGCCAAATCACAGTTGTATAAGTTCTGTAGTGTGAGGCAT 316
Query 576 TGGAAAGCACCACTGTATGAGTATATCGCCGAGGGTCCTTGCCATATGAAAATATTTACA 635
|||||||||||| ||||||||| |||||||||||||||||||||||||| | ||||||||
Sbjct 317 TGGAAAGCACCAGTGTATGAGTGTATCGCCGAGGGTCCTTGCCATATGATATTATTTACA 376
Query 636 GGCAAAGTTACGGTTGAAATGAAGGAGGATTCTCGGATAACGGTTTTGGAGTGTTTTGGG 695
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 377 GTCAAAGCTACGGTTGAAATGAAGGAGGATTCTCGGATAACGGTTTTGGAGTGTTTTGGG 436
Query 696 AATCCACAGTACAAGAAGAAAATCGCAGCTGAGCAGGCAGCAGAAGCAGCACTTTGGTAT 755
||||||||| |||||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct 437 AATCCACAGCACAAGAAGAAGATAGCAGCTGAGCAGGCAGCAGAAGCAGCGCTTTGGTAT 496
Query 756 CTTAAGAATGTGGGT-TATACCCTTCAAACAGAGAAAGCTTCTGGTCGTAAAGGACGGAG 814
||||||||||||||| | ||||||||||||||||||||||||||||| |||||| | ||
Sbjct 497 CTTAAGAATGTGGGTCT-TACCCTTCAAACAGAGAAAGCTTCTGGTCATAAAGGGCAGA- 554
Query 815 TAAA-CCGATATCGAAGATGATGGTAACAGGTGAACCCGTGTAATGATCTTTGCCAGTTA 873
|||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 555 TAAAACCGATATCGAAGATGATGGGAATAGGTGAACCCGTGTAATGATCTTTGCCAGTTA 614
Query 874 GAAT 877
||||
Sbjct 615 GAAT 618
> Ahg491431 jgi|Araly1|491431|fgenesh2_kg.7__864__AT4G32760.1
Length=2521
Score = 130 bits (70), Expect = 2e-29
Identities = 77/80 (96%), Gaps = 1/80 (1%)
Strand=Plus/Plus
Query 139 GCAAGCAAAAGATGTTGTGAAAGGCATTTAAAAAACGGATTGGTAGCAGGAATCCAAAAG 198
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 265 GCAAGCAAAAGATGTTGTGAAAGGCA-TTAAAAAACGGATTGGTAGCAGGAATCCAAAAG 323
Query 199 CTCAGCTTCTTGCCATAACT 218
|||| ||||||||| |||||
Sbjct 324 CTCAACTTCTTGCCTTAACT 343
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39152235759
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5