BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00440.2
Length=3708
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490525 jgi|Araly1|490525|fgenesh2_kg.6__3659__AT4G00440.1 3223 0.0
Ahg909803 jgi|Araly1|909803|Al_scaffold_0001_57 58.4 4e-07
> Ahg490525 jgi|Araly1|490525|fgenesh2_kg.6__3659__AT4G00440.1
Length=3614
Score = 3223 bits (1745), Expect = 0.0
Identities = 2138/2312 (92%), Gaps = 89/2312 (4%)
Strand=Plus/Plus
Query 220 TTTTTATTTGAATGTTGAACAGTAAGAAGAAGGTTTATT-CTATTCTATTGGGTTGGGTT 278
||||||||||||||||||||||||||||||| ||| ||| || || |||| ||||||||
Sbjct 187 TTTTTATTTGAATGTTGAACAGTAAGAAGAA-GTTGATTACTCTTTTATTCTGTTGGGTT 245
Query 279 GTTCATCAACTTTGGAAATTTAAAGATGC-A--TTTTTTATGATC--CTTTTTTCTCCGC 333
|||||||||||||||||| |||||| ||| | |||||||||||| |||||| ||| |
Sbjct 246 GTTCATCAACTTTGGAAA-TTAAAGCTGCAATTTTTTTTATGATCTTTTTTTTTTTCCTC 304
Query 334 CTTTGTTGTTGATTTGATCGTGTATGATTACGGAAGCTTgggggggTTTTTATCAGACAG 393
| || |||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 305 C-TT-TTGTTGATTTGATCGTGTATGATTACGGAAGCTT---GGGG-TTTTATCAGACAA 358
Query 394 AACCTGGAAAAGTTGTCAGATGAAACAATGTGGCTTGGAGATTGGATCATCAACTTTTCC 453
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 359 AACCTGGAAAAGTTGTCAGATGAAACAATGTGG-TTGGAGATTGGATCATCAACTTGTCC 417
Query 454 TCTGTTTTCAACTTTATAAGCTATCATTTTGCTTAAtcttcttcattct-cttctctcgg 512
||||||||||| |||||||| | || || || | | ||||| | ||| | |
Sbjct 418 TCTGTTTTCAAGTTTATAAG-----A--TT-CTGAAGC-T-ATCATT-TGCTT-AAT--G 463
Query 513 ccttggctttgaagaaatctcaattttcttcttcttcttcttctACCGTTTTGTCCGGCG 572
|||||||||| |||||||||||| || |||||||||||||||||||| |||||||
Sbjct 464 CCTTGGCTTTAAAGAAATCTCAA-----TT-GTCTTCTTCTTCTACCGTTTTTTCCGGCG 517
Query 573 ATCAGAGCTGGTTCAGGAGAAACCTTAAGTCTTGGTATCAAAAGAAAGAAAGTTTTGGAA 632
|||| |||||||| | | | | ||| ||||||||||||||||
Sbjct 518 ATCAAAGCTGGTT----------C---A--C---G-----AAA-AAAGAAAGTTTTGGAA 553
Query 633 TTTACCTCTGCTGCTGCAACTTGCAACACtttttttATATATATTGGA-TTTTTCTATGG 691
|| | || ||||||||||||||| ||| ||| | | ||||||| |||||||||||
Sbjct 554 -CTA-C-CT-CTGCTGCAACTTGCATCAC----TTT-T-T-TATTGGATTTTTTCTATGG 602
Query 692 CTTTGCTCAAACGTAAGCAAAGCAGATGAAATCTAGCTACAATCGCTGTTGCCCTTGTAT 751
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 603 CTTTGCTCAGACGTAAGCAAAGCAGATGAAATCTAGCTACAATCGCTGTTGCCCTTCAAT 662
Query 752 GAAGTTTGGAATTTAAGGAATTCAGGAGAATCTAAGAGCATTTCTAAAGGGGCAACGTTA 811
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 663 GAAGTTTGGAATTTAAGGAATTCAGGAGAATCTAATAGCATTTCTAAAGGCACAACGTTA 722
Query 812 TAGAAGGTTAGGAAGGAGCATTTGTATAGAAAGTCATGGCGAAGAAAACACAACGTCGTG 871
||||||||||| | ||| |||||||| |||||| |||||||||||||||||||
Sbjct 723 GAGAAGGTTAGG-A--AGC------ATAGAAAGCCATGGCAAAGAAAACACAACGTCGTG 773
Query 872 CTGCTGCTCGACAGGAGAGGGAACAGTTAGGGTGCATGTGGGGATTTATGAATATGTTTA 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 CTGCTGCTCGACAGGAGAGGGAACAGTTAGGGTGCATGTGGGGATTTATGAATATGTTTA 833
Query 932 GTTTCCGCCATGGACCACTGGCTCACAAGCTGCTTCTCGACCAAAAGCATGCTTCTGGAA 991
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 ATTTCCGCCATGGACCACTGGCTCACAAGCTGCTTCTCGACCAAAAGCATGCTTCTGGAA 893
Query 992 ATCCTAAGAACAATGAGCTTAACAAGTCCAAATTCCGCGAAAAGGATGCTCAAGAAACCC 1051
|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||
Sbjct 894 ATCCTAAGAACAATGAGCTTAACAAGTCCAAACTCCGCGAAACGGATGCTCAAGAA-CCC 952
Query 1052 A-TGTTGGTGAAGAACGCAATATCACGATAACGATTATAAAGCCAAGTGTGAAGAAGCTT 1110
| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 953 AATGTTGGTGAAGAACGCAATATCACGATAACAATTATAAAGCCAAGTGTGAAGAAGCTC 1012
Query 1111 ATAGCAGAAGAGTTGTCCATTGACAAGGAAATCAAGAAGCAGAGGGAGAATGCTGAAGCA 1170
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1013 ATAGCAGAAGAGTTGTCCATTGACAAGGAAATCAAGAAGCAGAGGGAGAGTGCTGAAGCA 1072
Query 1171 GGACAGTTGTCAGACTCTGAACTTgaaggaagaagaaggaaaaaccagaggagaaaaaac 1230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 GGACAGTTGTCAGACTCTGAACTTGAAGGAAGAAGAAGGAAAAACCAGAGGAGAAAAAAC 1132
Query 1231 aagactcgcaagaaaagCTGCGATAATTTTAGCCATATGAACTTAGTTGACAGTGAAGAG 1290
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1133 AAGACACGCAAGAAAAGCTGCGATAATTTTAGCCATATAAACTTAGTTGACAGTGAAGAG 1192
Query 1291 CCTCTAGTTCAACGCAGAAATCGTAGGTCTGCAAGGAGTGTTGACATTGATAATATGATT 1350
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1193 CCTCAAGTTCAACGCAGAAATCATAGGTCTGCAAGGAGTGTTGACATTGATAATATGATT 1252
Query 1351 GAAGAGTTCTATTCTGAAATTCATCGCAGAAGTACAAGCCATGCAAAGAATGACGAAGAT 1410
||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||
Sbjct 1253 GAAGAGTTCTATTCTGAGATTCATCGCAGAAGTACAAGTCGTGCAAAGAATGACGAAGAT 1312
Query 1411 TACAAAGAAAAACTGAGGGAGTTGGTCAAGTTTTTAATCAGTCAGAAGCTTTTACATGGG 1470
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1313 TACAAAGAAAAACTGAGGGAGTTGGTCAAGTTTTTAATTAGTCAGAAGCTTTTACATGGG 1372
Query 1471 AACCGTCCCAGAGGAAATAGTGAAATACTTACATCTAAGGATTTGATGGAAGTGTTTCAA 1530
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1373 AACCGTCCCAGAGGAAATAGTGAAATCCTTACGTCTAAGGATTTGATGGAAGTGTTTCAA 1432
Query 1531 ATTCTGGGATCAGATGAAGAATTGTTTCTCAAACTTCTGCAAGATCCAGAGATACTTGTG 1590
|| || ||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1433 ATCCTTGGATCGGATGAAGACTTGTTTCTCAAACTTCTGCAAGATCCAGAGATACTTGTG 1492
Query 1591 CCTAGGGAGAAAGGAGCAGAAAGCTTGAGTTTGGTTGAGTCAGAACAATCTTCTCTTGCT 1650
|| |||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 1493 CCAAGGGAGAAGGGAGCAGAAAGCTTGAGCTTGTTTGAGTCAGAACAATCTTCTCTTGCT 1552
Query 1651 GATAAGAAATGGTCTAGCTTTTTCAGGAGAAAAGATGAACCACAAGAAGAATGTGAAGCT 1710
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1553 GATAAGAAATGGTCTAGCTTTTTCAGGAGGAAAGATGCACCACAAGAAGAATGTGAAGCT 1612
Query 1711 TCAGATAGGATTTTCATTCTGAAGCCAAGATCAGCTAGCTTTTCAAGTCCGGACATAGGA 1770
|| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1613 TCTGACCGGATTTTCATTCTGAAGCCAAGATCAGCAAGCTTTTCAAGTCCGGACATAGGA 1672
Query 1771 AATAGTCGTGGTTCGTCACCTGATTCTCATTTGATGGGAAACAAATTGCAGAACGAGAGA 1830
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1673 AATAGTCGTGGTTCGTCACCTGATTCTCATCTGATGGGAAACAAATTGCAGAACGAGAGA 1732
Query 1831 AACAGTTCACATTACTTTCTTTCTGAGATCAAGAGGAAACTAAAACATGCAATCAAAAAG 1890
||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1733 AACAGTTCACATTTCTTTCTTTCTGAGATCAAGAGGAAGCTGAAACATGCAATCAAAAAA 1792
Query 1891 GAGCAACCGGCCGGGGGATTTGGGGAAGGGTTTCCGAAAACTAAAGATCATTTCTTTCTC 1950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1793 GAGCAACCGGCCGGGGGATTTGGGGAAGGGTTTCCGAAAACTAAAGATCATTTCTTTCTC 1852
Query 1951 GAGCGGATGGCGAAGCCTTCAACATCTCAGAAGAAATCTCATAGTGAAGATGATAAAAAG 2010
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1853 GAGCGGATGGCAAAGCCTTCAACATCTCAGAAGAAATCTCATAATGAAGATGATAAAAAG 1912
Query 2011 CAAAGGGTATCCAACATTTACACAGAGGCCAAGAAACATCTGTCTGAGATGTTAAACAAT 2070
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1913 CAAAGGGTATCCAACATTTACATAGAGGCCAAGAAACATCTGTCTGAGATGTTAAACAAT 1972
Query 2071 GGAGATCTTGATTCGAAGTCAACGAGCAGACAGGTCCAAAGAAGCCTAGGGAGAATTCTC 2130
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1973 GGAGATCTTGATTCGAAGTCAACGAGTAGACAGGTTCAAAGAAGCCTAGGGAGAATTCTC 2032
Query 2131 TCCTTTCCTGAGTACTTGTCTCCTCTAAACAGCCCAGGAAGAAGATGGGAAAAGAGCTCA 2190
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2033 TCCTTTCCTGAGTACTTGTCTCCTCTAAACAGCCCAGGAAGAAGATGGGAAAAGATCTCA 2092
Query 2191 ACTGCTCACAAGAAGTCTGCTTCAGCGGATTTCATAAATCTTGTGAACATCAAGAAAGAA 2250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2093 ACTGCTCACAAGAAGTCTGCTTCAGCGGATTTCATAAATCTTGTGAACATCAAGAAAGAA 2152
Query 2251 ACTCATGCGAGCCAACCAGAGGAAAATACTGATATTCAGGTCTGCAATCTAAGC-AAAGA 2309
||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
Sbjct 2153 ACTCATGCGAGCCAACCAGAGGAAAATGCTGATATTCAGGTCTGCAATCTAAGCGAAA-A 2211
Query 2310 ACCTGATGATTCTATCCAACCAATCG-CAAGTGAACCTAATGAGAAAAGTGTTGACATTG 2368
||||||||||||||||||||||| || ||| |||||||| ||||||||||||||||||||
Sbjct 2212 ACCTGATGATTCTATCCAACCAA-CGGCAACTGAACCTACTGAGAAAAGTGTTGACATTG 2270
Query 2369 AGGATGAAACTGCTAACGAAGATAACATGTTTTCTGCAGGTTCTGCAGATGATGTGATGA 2428
||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||
Sbjct 2271 AGGATGAAACTGCTAACGAAGATAAAATGTCTTCTGCAGGTTCTGCAGATGATGTAATGA 2330
Query 2429 TTCCCAATGAGCTAGATGAAGTTCCAGAGGAAGCAAGCTCTACATTGATTGGTGACTTAT 2488
||| ||||||| |||||| |||||||||||||||||||||||| |||||||||||||| |
Sbjct 2331 TTCTCAATGAGATAGATGTAGTTCCAGAGGAAGCAAGCTCTACTTTGATTGGTGACTTGT 2390
Query 2489 -CAAAAGTTGAAGCTCAGGATGAACAGAGAGA 2519
|||| ||||||||||| ||||||||||||||
Sbjct 2391 GCAAA-GTTGAAGCTCATGATGAACAGAGAGA 2421
Score = 1218 bits (659), Expect = 0.0
Identities = 745/785 (95%), Gaps = 12/785 (2%)
Strand=Plus/Plus
Query 2551 GAGAGCCAACCACCACTGTCTTCCTCTGTGGCCTCACCATCCCACTGTTTAGCTCAAACT 2610
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 2423 GAGAGCCAACCACCACTGTCTTCCTCTGTGGCCTCACCATCTCACTGTTTAGCTAAAACT 2482
Query 2611 GAGGAGTGCAAATCAGCTATTACTGATTTTCCGGAGTGGTCAAGCCCAATATCAGTTCTT 2670
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2483 GAGGAGTGCAAATCAGCTATTACCGATTTTCCGGAGTGGTCAAGCCCAATATCAGTTCTT 2542
Query 2671 GAGCCACTCTTCGTCGAAGATGATATAAGCCCAGCAAAAATGCGATCTCAGTCTGGTGAA 2730
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2543 GAGCCACTCTTCGTTGAAGATGATATAAACCCAGCAAAAATGCGATCTCAGTCTGGTGAA 2602
Query 2731 GCAGAGGTGCAACCGTGGTGTATCCACTTCGATGAAAAAGATCCTGCACCTACATACCGA 2790
|||||||||||||| ||||||||||||||||||||||||||||||| | ||| | |||||
Sbjct 2603 GCAGAGGTGCAACCTTGGTGTATCCACTTCGATGAAAAAGATCCTGTAACTAAAAACCGA 2662
Query 2791 GAAAATTCTGTGACAAGTGACAAAGAATTGGTGTTTAAGTATGTAAAAGCTGTCTTGGAC 2850
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2663 GAGAATTCTGTCACAAGTGACAAAGAATTGGTGTTTAAGTATGTAAAAGCTGTCTTGGAC 2722
Query 2851 GCAGTAGACTCAGACATCGAAGAGCTCTATCTAAAGGCGCAATTCTCTGACCAGCTTCTT 2910
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2723 GCAGTAGACTCAGACTTCGAAGAGCTCTATCTGAAGGCGCAATTCTCTGACCAGCTTCTT 2782
Query 2911 GAACCAGCACTTATCAGCAATATACCATTCTGTCCAAACCAGCTTTGTCCTGACCATGAG 2970
||||| |||||||||||||||||||| ||||||||||| |||||||| ||||||||||||
Sbjct 2783 GAACCGGCACTTATCAGCAATATACCGTTCTGTCCAAATCAGCTTTGCCCTGACCATGAG 2842
Query 2971 CTCCTCTTTGACTGCATCAATGAAGCTCTCATGGAGTTATGCTGTTGCCCACCTTGGGCT 3030
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2843 CTCCTCTTTGACTGCATCAATGAAGCTCTCATGGAGTTATGCTGTTGCCCACCTTGGGCT 2902
Query 3031 TCGTTTGTTACACCAAGAACCAGAGTCTTCTCTACCGTCAAAAGCATCATCCATGAGGTT 3090
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 2903 TCGTTTGTTACACCAAGAACCAGAGTCTTCTGTACCGTCAAAAGCATCATTCATGAGGTA 2962
Query 3091 CAAGAAGCGGTTTACTGGCATCTCTTGCCATTGCCACTCCCTCACGCCTTGGATCAGATA 3150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2963 CAAGAAGCGGTTTACTGGCATCTCTTGCCATTGCCACTCCCTCACGCCTTGGATCAGATA 3022
Query 3151 GTTAGAAAAGATATGGCTAGAGCTGGAAACTGGTTAGACATCAGATGTGACATTGACTGC 3210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3023 GTTAGAAAAGATATGGCTAGAGCTGGAAACTGGTTAGACATCAGATGTGACATTGACTGC 3082
Query 3211 ATTGGCTTCGAAACTAGTGAACTGATTCTCAACGAGTTACTCGAAGAGCTCATCCTCAAC 3270
||||| || ||||||||||||||||||||| ||||||||||||||||||||| | ||
Sbjct 3083 ATTGGTTTTGAAACTAGTGAACTGATTCTCGACGAGTTACTCGAAGAGCTCA-C-TC--- 3137
Query 3271 AATACTGAGCACTCTCTGGTTTCACCTGAGTTGAAGACGGATGGGAGCATCCTTATTCTA 3330
| | | ||||||||||| ||||||||||||||||||||| ||||||||||||| ||
Sbjct 3138 --T-C--A--ACTCTCTGGTTCCACCTGAGTTGAAGACGGATGAGAGCATCCTTATTTTA 3190
Query 3331 GAAAG 3335
||||
Sbjct 3191 TAAAG 3195
Score = 370 bits (200), Expect = 4e-101
Identities = 297/340 (87%), Gaps = 22/340 (6%)
Strand=Plus/Plus
Query 3334 AGCACAGAACCATGTAGATAGTTTGTATTACTCAGTCAGACAAAAACCTCACGGAGCTCC 3393
|||||||||||||||||||| ||||||||| | |||||||| |||||||| || ||||
Sbjct 3294 AGCACAGAACCATGTAGATACTTTGTATTA--C--TCAGACAATAACCTCACAGAACTCC 3349
Query 3394 TGTCTGATCAGAAACTACTGAGAGGGAGAAGGAGGAAATCAGA---TCCTTTCAAAGACC 3450
|||||||||||||||||||||||||||| ||||||||| ||| ||||||||| ||||
Sbjct 3350 GGTCTGATCAGAAACTACTGAGAGGGAGAGGGAGGAAATAAGAACGTCCTTTCAA-GACC 3408
Query 3451 AGACCAGAAACTGTTAGTGGTGGGGTCATCAGAGAATCACTTTCAAAGACAGTCTTCTTC 3510
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 3409 AGACGAGAAACTGTTAGTGGTGGGGTCATCATAGAATCACTTTCAAAGACAGTCTTCTTC 3468
Query 3511 CTATAGGCTATTATATAGTATATGATTTATTATTTTATTTTAGAGTGTTTGTGTGAAGAT 3570
| |||| || |||| | | | |||| | | | | ||| | |||||||||||||||
Sbjct 3469 TTTTAGG--AT-ATAT--T-T-T-ATTT-T-AGTGTGTTT--G--TGTTTGTGTGAAGAT 3514
Query 3571 GGAGGGATGTGATAGTGTTTGTTTGAAATCGGTTTGTGTAACATTTTCAGAGTTTGACAT 3630
|||| ||||||||||||||||||| || | |||||||||||||||||| |||||||||||
Sbjct 3515 GGAGAGATGTGATAGTGTTTGTTTTAAGTTGGTTTGTGTAACATTTTCGGAGTTTGACAT 3574
Query 3631 AACAATGTATTATGGATTAGGAGTATGACAAATTCAAAGT 3670
||||||||||||||||||||||||||||||| || |||||
Sbjct 3575 AACAATGTATTATGGATTAGGAGTATGACAATTTAAAAGT 3614
Score = 224 bits (121), Expect = 4e-57
Identities = 168/189 (89%), Gaps = 9/189 (5%)
Strand=Plus/Plus
Query 12 GTTGTCAAATTGGCATAAAGttttccacttttttactctgat-tttttc-tcccatttct 69
||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||
Sbjct 1 GTTGTCAAATTGGCATAAAGTTTTCCACTTTTTTACT-TGATATTTTTCCTCCCATTTCT 59
Query 70 ctctcacttttt-ctttgcctttGCCCAATTC-AGAGAACTAATGGCTTTGTCGGTCATC 127
|||||||||||| |||||||||||||||||| ||| ||||||||| ||||||||||||
Sbjct 60 CTCTCACTTTTTTCTTTGCCTTTGCCCAATTTGAGAAAACTAATGGTTTTGTCGGTCATT 119
Query 128 GATAGATAA-ACAAAATTTAATCTTTA-TCTCTCTCTTTCTCTTGTTTGTCAAAAGATGC 185
||||||||| ||| || || |||| | | | ||| ||||||||||||||||||||||
Sbjct 120 GATAGATAAGACAC--TTCAAAATTTAATATTTATCTCTCTCTTGTTTGTCAAAAGATGC 177
Query 186 CCACCAACA 194
|||||||||
Sbjct 178 CCACCAACA 186
> Ahg909803 jgi|Araly1|909803|Al_scaffold_0001_57
Length=2568
Score = 58.4 bits (31), Expect = 4e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 1929 AACTAAAGATCATTTCTTTCTCGAGCGGATG 1959
|||||||||||||||||||||||||||||||
Sbjct 1629 AACTAAAGATCATTTCTTTCTCGAGCGGATG 1659
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 140089926213
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5