BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G00460.2 Length=1714 Score E Sequences producing significant alignments: (Bits) Value Ahg490520 jgi|Araly1|490520|fgenesh2_kg.6__3654__AT4G00460.2 2531 0.0 > Ahg490520 jgi|Araly1|490520|fgenesh2_kg.6__3654__AT4G00460.2 Length=1652 Score = 2531 bits (1370), Expect = 0.0 Identities = 1578/1674 (94%), Gaps = 32/1674 (2%) Strand=Plus/Plus Query 22 TTCATCGTCTGGATCGTACGATCAG-TCTACCTTCCTTTCATCGGACGGTCCACATTTAC 80 |||||||||||||| ||| |||||| ||| |||| || |||||||||||||||||||||| Sbjct 1 TTCATCGTCTGGATGGTAAGATCAGTTCTTCCTTTCTATCATCGGACGGTCCACATTTAC 60 Query 81 TCCATTTTCCGGTCGCCGGCTTAAAGAACGATTTCGATTCAACCGGAGGGAATTTGGttt 140 |||||||||||||||||||||||||||| | ||| |||||||| |||||||||| | Sbjct 61 TCCATTTTCCGGTCGCCGGCTTAAAGAAGGTTTTGGATTCAACAAGAGGGAATTT-G--- 116 Query 141 ttttATTAACGTTCAAATTTTTTGCTTTAAACGTACGTTTCAAATTCAAGAAGAAGCTTT 200 ||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 117 ----------GTT----TTTTTTGCTTTAAACGTACGTTTCAAATTCAAGAAGAAGCTTT 162 Query 201 AAAGAAGAAACAGAGCAAGAACaaaaaaaaCAGACCTTTAAGGAGTGTTTTAAGATTTTA 260 |||||||||||||| |||||||||||| |||||||||| |||| ||||| ||| ||| Sbjct 163 AAAGAAGAAACAGAACAAGAACAAAAAGGACAGACCTTTGAGGA--GTTTTCAGA--TTA 218 Query 261 AAGATGGAGAATTTATCGAATCCAGATGAAAACGAC--------G-ATCATCAATCACCT 311 |||||||||||||||||||||||||||||||||||| | |||||||||||||| Sbjct 219 AAGATGGAGAATTTATCGAATCCAGATGAAAACGACGATGTGGGGTATCATCAATCACCT 278 Query 312 AGATCCATTGACCAAAATGATCAATCAGCAGTAGAAACTCCGGTTTACTCGACGATGAGC 371 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 279 AGATCCATTGACCAAAATGATCAATCAGCAGCAGAAACTCCGGTTTACTCGACGATGAGC 338 Query 372 ATAGATTCCTTTGTTTACCCTCGAACTTGTTCAGAGACCACTTCAGGGTTTTCAGACCAG 431 || |||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||| Sbjct 339 ATTGATTCCTTTGTTTATCCTCGAACTTGTTCAGAGAGCACTTCAGGTTTTTCAGACCAG 398 Query 432 ATAGATGAAACCAACAGCTTCTGTAGTGAAGCTTCTCCTTGTAACTGGCCTGTCCTTACT 491 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 399 ATAGATGAAACCAACAGCTTCTGTAGTGAAGCTTCTCCTTGTAATTGGCCTGTCCTCACT 458 Query 492 GAATCTAAGAGCTCCAAATGTCTCTCTGGTTTAGAGATGCAATCAAATGAATGTCTTGTA 551 |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| | Sbjct 459 GAATCTAAGAGCTCCAAATGTCTCTCTGGTTTAGAGGTGCAATCAAATGAAAGTCTTGCA 518 Query 552 GTCCAAGAAATTTCTGAACCAGAACTTGAGACAATGAAGGAAAGATTCGCTAAGCTTCTA 611 |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 519 GTCCAAGAAATTTCAGAACCAGAACTTGAGACAATGAAGGAAAGATTCGCAAAGCTTCTA 578 Query 612 CTTGGAGAAGATATGTCAGGGAGTGGTAAAGGAGTTTGCACTGCAGTGACTATCTCAAAC 671 ||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 579 CTTGGAGAAGACATGTCAGGGAGTGGTAAAGGAGTTTGCACTGCAGTAACGATCTCAAAC 638 Query 672 GCAATTACCAATCTTTATGCTACAGTGTTTGGACAGAATCTGAGGTTAGAGCCGTTAGAA 731 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 639 GCAATTACCAATCTTTATGCTACAGTGTTTGGACAGAATCTGAGGTTAGAGCCGTTAGAA 698 Query 732 ACAGAGAAGAGAGCATTGTGGAAGAGAGAAATGAATTGTCTTTTATCTGTATGCGATTAC 791 ||||||||||||||| ||||||||||||| ||||||||||| ||||| |||||||||||| Sbjct 699 ACAGAGAAGAGAGCAATGTGGAAGAGAGAGATGAATTGTCTCTTATCGGTATGCGATTAC 758 Query 792 ATTGTCGAATTCATCCCTAGATGTCAGAATCTAAGCAATGGAGCTACTGTTGAGGTGATG 851 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 759 ATAGTCGAATTCATCCCTAGATGTCAGAATCTAAGCAATGGAGCTACTGTTGAGGTGATG 818 Query 852 GAGAGTAGACCAAGAGCAGATATCTATATCAACTTGCCTGCATTGAGAAAGCTAGATTCA 911 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 819 GAGAGTAGACCAAGAGCAGATATCTATATCAACTTACCTGCATTGAGAAAGCTAGATTCA 878 Query 912 ATGCTTATGGAAGCATTGGATAGTTTTCAGAACACAGAGTTTTGGTATGCAGAAGAAGGA 971 ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| Sbjct 879 ATGCTTATGGAAGCATTGGATGGTTTTCAAAACACAGAGTTTTGGTATGCAGAAGAAGGA 938 Query 972 AGTTTATCGATGAAATCAGCTCGTTCTTCGACTGGATCATTCAGGAAAGTTATAGTACAA 1031 ||||| |||||||||||||| ||||||||||||||||||||||||||||| || ||||| Sbjct 939 AGTTTGTCGATGAAATCAGCGCGTTCTTCGACTGGATCATTCAGGAAAGTGATTGTACAG 998 Query 1032 AGGAAAGAAGAGAAATGGTGGTTACCAGTTCCTCTAGTACCATCAGAAGGTTTGTCAGAT 1091 ||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||| Sbjct 999 AGGAAAGAAGAGAAATGGTGGTTACCAATTCCTCTAGTGCCACCAGAAGGTTTGTCAGAT 1058 Query 1092 AAAGCCAGAAAACAACTCAAGAACAAGAGAGAAAGTACCAATCAGATTCATAAAGCTGCA 1151 |||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||| Sbjct 1059 AAAGCCAGAAAACAACTCAAAAACAAGAGAGAGAGTACCAATCAGATTCACAAAGCTGCA 1118 Query 1152 ATGGCTATCAACAGTAGCATTCTCAGTGAAATGGAGATTCCAGACTCTTACATGACAACT 1211 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1119 ATGGCTATCAACAGTAGCATTCTCAGTGAAATGGAGATTCCAGAGTCTTACATGACAACT 1178 Query 1212 CTTCCAAAGTGTGGTAAAAGCAGTGTTGGAGATTCAATTTACCGTTACATGAGTGGTTCT 1271 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1179 CTTCCAAAGTGTGGTAAAAGCAGTGTTGGAGATTCAATTTACCGTTACATGAGTGGTTCG 1238 Query 1272 GGTCGGTTTTTCCCAGAGCAACTCTTAGATTGTCTGAACATATCTTCCGAACATGAAGCT 1331 ||||||||||||||||| ||||| |||||||||||||||||| | || || ||||||||| Sbjct 1239 GGTCGGTTTTTCCCAGAACAACTGTTAGATTGTCTGAACATAGCCTCTGAGCATGAAGCT 1298 Query 1332 GTTCAGTTAGCAGATAGAGTAGAAGCTTCGATGTACACATGGAGACGCAAATCTTGTCTT 1391 ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| Sbjct 1299 GTTCAGTTAGCAGATAGAGTAGAAGCTTCAATGTACACATGGAGACGCAAAGCTTGTCTT 1358 Query 1392 AGTAACTCCAAGAACTCATGGAACATGGTGAAAGATCTTATGTCAACTACAGAGAGAACA 1451 |||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1359 AGTAACTCTAAGAGCTCATGGAACATGGTGAAAGATCTTATGTCAAATACAGAGAGAACA 1418 Query 1452 GACAAGAACTATGTTATGGCTGAGAGAGCTGAGACTCTCCTCTTCTGTTTGAAACAGCGT 1511 |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1419 GACAAGAACTATGTAATGGCTGAGAGAGCAGAGACTCTCCTCTTCTGTTTGAAACAGCGT 1478 Query 1512 TATCCAGAATTGTCTCAGACATCATTAGATATATGCAAGATTCAGTACAATAAGGATGTT 1571 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1479 TATCCAGAATTGTCTCAGACATCATTAGATATATGCAAGATTCAGTACAATAAGGATGTT 1538 Query 1572 GGAAAAGCTGTGTTGGAGAGCTACTCAAGAGTACTTGAAGGTTTAGCTTTTAACATAGTT 1631 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1539 GGAAAAGCTGTGTTGGAGAGCTACTCAAGAGTACTTGAAGGTTTAGCTTTTAACATAGTT 1598 Query 1632 GCTTGGATTGATGATGTTCTCTATGTAGACAAAACCATGAGAGGTAGTGAATAA 1685 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1599 GCTTGGATTGATGATGTTCTCTATGTAGACAAAACCATGAGAGGTAGTGAATAA 1652 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64296333560 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5