BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00460.2
Length=1714
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490520 jgi|Araly1|490520|fgenesh2_kg.6__3654__AT4G00460.2 2531 0.0
> Ahg490520 jgi|Araly1|490520|fgenesh2_kg.6__3654__AT4G00460.2
Length=1652
Score = 2531 bits (1370), Expect = 0.0
Identities = 1578/1674 (94%), Gaps = 32/1674 (2%)
Strand=Plus/Plus
Query 22 TTCATCGTCTGGATCGTACGATCAG-TCTACCTTCCTTTCATCGGACGGTCCACATTTAC 80
|||||||||||||| ||| |||||| ||| |||| || ||||||||||||||||||||||
Sbjct 1 TTCATCGTCTGGATGGTAAGATCAGTTCTTCCTTTCTATCATCGGACGGTCCACATTTAC 60
Query 81 TCCATTTTCCGGTCGCCGGCTTAAAGAACGATTTCGATTCAACCGGAGGGAATTTGGttt 140
|||||||||||||||||||||||||||| | ||| |||||||| |||||||||| |
Sbjct 61 TCCATTTTCCGGTCGCCGGCTTAAAGAAGGTTTTGGATTCAACAAGAGGGAATTT-G--- 116
Query 141 ttttATTAACGTTCAAATTTTTTGCTTTAAACGTACGTTTCAAATTCAAGAAGAAGCTTT 200
||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 ----------GTT----TTTTTTGCTTTAAACGTACGTTTCAAATTCAAGAAGAAGCTTT 162
Query 201 AAAGAAGAAACAGAGCAAGAACaaaaaaaaCAGACCTTTAAGGAGTGTTTTAAGATTTTA 260
|||||||||||||| |||||||||||| |||||||||| |||| ||||| ||| |||
Sbjct 163 AAAGAAGAAACAGAACAAGAACAAAAAGGACAGACCTTTGAGGA--GTTTTCAGA--TTA 218
Query 261 AAGATGGAGAATTTATCGAATCCAGATGAAAACGAC--------G-ATCATCAATCACCT 311
|||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 219 AAGATGGAGAATTTATCGAATCCAGATGAAAACGACGATGTGGGGTATCATCAATCACCT 278
Query 312 AGATCCATTGACCAAAATGATCAATCAGCAGTAGAAACTCCGGTTTACTCGACGATGAGC 371
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 279 AGATCCATTGACCAAAATGATCAATCAGCAGCAGAAACTCCGGTTTACTCGACGATGAGC 338
Query 372 ATAGATTCCTTTGTTTACCCTCGAACTTGTTCAGAGACCACTTCAGGGTTTTCAGACCAG 431
|| |||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 339 ATTGATTCCTTTGTTTATCCTCGAACTTGTTCAGAGAGCACTTCAGGTTTTTCAGACCAG 398
Query 432 ATAGATGAAACCAACAGCTTCTGTAGTGAAGCTTCTCCTTGTAACTGGCCTGTCCTTACT 491
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 399 ATAGATGAAACCAACAGCTTCTGTAGTGAAGCTTCTCCTTGTAATTGGCCTGTCCTCACT 458
Query 492 GAATCTAAGAGCTCCAAATGTCTCTCTGGTTTAGAGATGCAATCAAATGAATGTCTTGTA 551
|||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
Sbjct 459 GAATCTAAGAGCTCCAAATGTCTCTCTGGTTTAGAGGTGCAATCAAATGAAAGTCTTGCA 518
Query 552 GTCCAAGAAATTTCTGAACCAGAACTTGAGACAATGAAGGAAAGATTCGCTAAGCTTCTA 611
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 519 GTCCAAGAAATTTCAGAACCAGAACTTGAGACAATGAAGGAAAGATTCGCAAAGCTTCTA 578
Query 612 CTTGGAGAAGATATGTCAGGGAGTGGTAAAGGAGTTTGCACTGCAGTGACTATCTCAAAC 671
||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 579 CTTGGAGAAGACATGTCAGGGAGTGGTAAAGGAGTTTGCACTGCAGTAACGATCTCAAAC 638
Query 672 GCAATTACCAATCTTTATGCTACAGTGTTTGGACAGAATCTGAGGTTAGAGCCGTTAGAA 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 639 GCAATTACCAATCTTTATGCTACAGTGTTTGGACAGAATCTGAGGTTAGAGCCGTTAGAA 698
Query 732 ACAGAGAAGAGAGCATTGTGGAAGAGAGAAATGAATTGTCTTTTATCTGTATGCGATTAC 791
||||||||||||||| ||||||||||||| ||||||||||| ||||| ||||||||||||
Sbjct 699 ACAGAGAAGAGAGCAATGTGGAAGAGAGAGATGAATTGTCTCTTATCGGTATGCGATTAC 758
Query 792 ATTGTCGAATTCATCCCTAGATGTCAGAATCTAAGCAATGGAGCTACTGTTGAGGTGATG 851
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 759 ATAGTCGAATTCATCCCTAGATGTCAGAATCTAAGCAATGGAGCTACTGTTGAGGTGATG 818
Query 852 GAGAGTAGACCAAGAGCAGATATCTATATCAACTTGCCTGCATTGAGAAAGCTAGATTCA 911
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 819 GAGAGTAGACCAAGAGCAGATATCTATATCAACTTACCTGCATTGAGAAAGCTAGATTCA 878
Query 912 ATGCTTATGGAAGCATTGGATAGTTTTCAGAACACAGAGTTTTGGTATGCAGAAGAAGGA 971
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 879 ATGCTTATGGAAGCATTGGATGGTTTTCAAAACACAGAGTTTTGGTATGCAGAAGAAGGA 938
Query 972 AGTTTATCGATGAAATCAGCTCGTTCTTCGACTGGATCATTCAGGAAAGTTATAGTACAA 1031
||||| |||||||||||||| ||||||||||||||||||||||||||||| || |||||
Sbjct 939 AGTTTGTCGATGAAATCAGCGCGTTCTTCGACTGGATCATTCAGGAAAGTGATTGTACAG 998
Query 1032 AGGAAAGAAGAGAAATGGTGGTTACCAGTTCCTCTAGTACCATCAGAAGGTTTGTCAGAT 1091
||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||
Sbjct 999 AGGAAAGAAGAGAAATGGTGGTTACCAATTCCTCTAGTGCCACCAGAAGGTTTGTCAGAT 1058
Query 1092 AAAGCCAGAAAACAACTCAAGAACAAGAGAGAAAGTACCAATCAGATTCATAAAGCTGCA 1151
|||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||
Sbjct 1059 AAAGCCAGAAAACAACTCAAAAACAAGAGAGAGAGTACCAATCAGATTCACAAAGCTGCA 1118
Query 1152 ATGGCTATCAACAGTAGCATTCTCAGTGAAATGGAGATTCCAGACTCTTACATGACAACT 1211
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1119 ATGGCTATCAACAGTAGCATTCTCAGTGAAATGGAGATTCCAGAGTCTTACATGACAACT 1178
Query 1212 CTTCCAAAGTGTGGTAAAAGCAGTGTTGGAGATTCAATTTACCGTTACATGAGTGGTTCT 1271
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1179 CTTCCAAAGTGTGGTAAAAGCAGTGTTGGAGATTCAATTTACCGTTACATGAGTGGTTCG 1238
Query 1272 GGTCGGTTTTTCCCAGAGCAACTCTTAGATTGTCTGAACATATCTTCCGAACATGAAGCT 1331
||||||||||||||||| ||||| |||||||||||||||||| | || || |||||||||
Sbjct 1239 GGTCGGTTTTTCCCAGAACAACTGTTAGATTGTCTGAACATAGCCTCTGAGCATGAAGCT 1298
Query 1332 GTTCAGTTAGCAGATAGAGTAGAAGCTTCGATGTACACATGGAGACGCAAATCTTGTCTT 1391
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1299 GTTCAGTTAGCAGATAGAGTAGAAGCTTCAATGTACACATGGAGACGCAAAGCTTGTCTT 1358
Query 1392 AGTAACTCCAAGAACTCATGGAACATGGTGAAAGATCTTATGTCAACTACAGAGAGAACA 1451
|||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1359 AGTAACTCTAAGAGCTCATGGAACATGGTGAAAGATCTTATGTCAAATACAGAGAGAACA 1418
Query 1452 GACAAGAACTATGTTATGGCTGAGAGAGCTGAGACTCTCCTCTTCTGTTTGAAACAGCGT 1511
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1419 GACAAGAACTATGTAATGGCTGAGAGAGCAGAGACTCTCCTCTTCTGTTTGAAACAGCGT 1478
Query 1512 TATCCAGAATTGTCTCAGACATCATTAGATATATGCAAGATTCAGTACAATAAGGATGTT 1571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1479 TATCCAGAATTGTCTCAGACATCATTAGATATATGCAAGATTCAGTACAATAAGGATGTT 1538
Query 1572 GGAAAAGCTGTGTTGGAGAGCTACTCAAGAGTACTTGAAGGTTTAGCTTTTAACATAGTT 1631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1539 GGAAAAGCTGTGTTGGAGAGCTACTCAAGAGTACTTGAAGGTTTAGCTTTTAACATAGTT 1598
Query 1632 GCTTGGATTGATGATGTTCTCTATGTAGACAAAACCATGAGAGGTAGTGAATAA 1685
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1599 GCTTGGATTGATGATGTTCTCTATGTAGACAAAACCATGAGAGGTAGTGAATAA 1652
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64296333560
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5