BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00467.1
Length=609
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327726 jgi|Araly1|327726|fgenesh1_pm.C_scaffold_6002946 922 0.0
> Ahg327726 jgi|Araly1|327726|fgenesh1_pm.C_scaffold_6002946
Length=615
Score = 922 bits (499), Expect = 0.0
Identities = 575/612 (94%), Gaps = 4/612 (1%)
Strand=Plus/Plus
Query 1 ATGAAGAGAGGGA-TATTGGAAGTATTTCTCATTGATGCTCATGGAATCACACACACAAA 59
||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 ATGAAGAGA-GGATTATTGGAAGTATTTCTCGTTGATGCTCATGGAATCACACACACAAA 59
Query 60 TTTTATCGGAACTCCTGTGTATTATGTGCTCTTACAATGTGGGACAAAGGAATACCGTAG 119
|||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 60 TTTTATTGGAAGTCCTGTGTATTATGTGCTCTTACAATGTGGGATAAAGGAATACCGTAG 119
Query 120 CAAAATGTCAAAAGGTGATAATGACAATGCATTGTGGAACCAAAAGTTTGTTTTCGATTT 179
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CAAAATGTCGAAAGGTGATAATGACAATGCATTGTGGAACCAAAAGTTTGTTTTCGATTT 179
Query 180 CCCGATGTCTCAATGGAAGAAACTGACCTATATCAAATTAAGAATCTTGGACAAAGAGCT 239
||| ||||||||||||||||| |||||||| |||||||| |||||| |||||||||||||
Sbjct 180 CCCAATGTCTCAATGGAAGAAGCTGACCTACATCAAATTTAGAATCATGGACAAAGAGCT 239
Query 240 CTTCAATGATGGTGGATTTGTCGGTGAAACCATAATTCATCTCGGAGGCATAATAACCGA 299
|||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 240 CTTCAAAGATGGTGGATTTGTCGGTGAAACCATAATTCATCTTGGAGGGATAATAACCGA 299
Query 300 AGGGCGTGACAGAGGATACATTGAAATAAAACCAGCTCCATACAATGTTGTTCTTGAGGA 359
||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 300 AGGACGTGACAGAGGATACATGGAAATTAAACCAGCTCCATACAATGTTGTTCTTGAGGA 359
Query 360 CGATACTTTTAAAGGTGAACTAAAAGTCGGATTGAGATTCATTGCAACAGATAAATTGCA 419
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 360 CGATACTTTTAAAGGTGAACTAAAAGTCGGATTGAGATTCATTGCAACGGATAAATTGCA 419
Query 420 GAGGAAAGCATGGGAGCTGAAGATGGAGGCCAAAAACAGTGAAGAACTAATGATTTCTCC 479
||||||||||||||| ||||||||||||||||||||| | ||||||| |||| |||||||
Sbjct 420 GAGGAAAGCATGGGAACTGAAGATGGAGGCCAAAAACCGCGAAGAACCAATGGTTTCTCC 479
Query 480 AATTCAGAATCTGATGAAACTCCCATTACTAAGGTTTATAGCTGCATGGGCAAGAAGGCA 539
||||| |||||| |||||||| || || |||||||| |||||||||||||||||||||||
Sbjct 480 AATTCTGAATCTAATGAAACTTCCTTTGCTAAGGTTCATAGCTGCATGGGCAAGAAGGCA 539
Query 540 ATGTCTCATCAATGCAAAACTACTTTATTGTTTCGTCGACTATAAGAAATGC-CTTACTC 598
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 540 GTGTCTCATCAATGCAAAACTACTTTATTGTTTCGTCGACTATAAGCAATGTTCTTACTT 599
Query 599 CTT-ATTCGTAG 609
||| ||| ||||
Sbjct 600 CTTTATTTGTAG 611
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22263783528
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5