BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00480.2
Length=1856
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327725 jgi|Araly1|327725|fgenesh1_pm.C_scaffold_6002945 2281 0.0
> Ahg327725 jgi|Araly1|327725|fgenesh1_pm.C_scaffold_6002945
Length=1566
Score = 2281 bits (1235), Expect = 0.0
Identities = 1470/1578 (93%), Gaps = 37/1578 (2%)
Strand=Plus/Plus
Query 60 ATGTCTTTGACAATGGCTGATGGTGTAGAAGCTGCAGCAGGAAGAAGTAAAAGACAAAAC 119
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 1 ATGTCTTTGACAATGGCTGATGGTGTAGAAGCTCCAGGAGGAAGAAGTAAAAGACAAAAC 60
Query 120 AGCTTATTAAGAAAACAACTTGCTTTAGCTGTAAGAAGTGTTCAATGGAGCTACGCAATC 179
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGCTTATTAAGAAAGCAACTTGCTTTAGCTGTAAGAAGTGTTCAATGGAGCTACGCAATC 120
Query 180 TTCTGGTCGTCTTCACTTACTCAACCTGGGGTTTTGGAGTGGGGAGAAGGATGTTACAAT 239
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 121 TTCTGGTCGTCTTCACTTACTCAACCTGGGGTTGTGGAGTGGGGAGAAGGATGTTACAAT 180
Query 240 GGAGATATGAAGAAGAGGAAGAAGAGTTATGAATCTCATTATAAATATGGGTTGCAAAAA 299
|| |||||||||||||||||||||||||| |||||||||||||||||||| ||||| | |
Sbjct 181 GGTGATATGAAGAAGAGGAAGAAGAGTTACGAATCTCATTATAAATATGGTTTGCAGAGA 240
Query 300 AGCAAGGAGCTTCGGAAACTTTATTTGTCTATGCTTGAAGGAGACAGTGG---TACTACT 356
|||||| ||||||||||||||||||||||||||||||||||||| | ||| |||||||
Sbjct 241 AGCAAGCAGCTTCGGAAACTTTATTTGTCTATGCTTGAAGGAGATAATGGTACTACTACT 300
Query 357 GTTAGTACTACTCATGATAATCTC-A--ATGATGATGATGATAA-T-T-GTCACAGTACA 410
|||||||||||||||||| ||| | | |||||||||||||||| | | |||||||||||
Sbjct 301 GTTAGTACTACTCATGATGATCACAATGATGATGATGATGATAATTGTCGTCACAGTACA 360
Query 411 AGTATGATGCTGTCACCAGATGACCTCTCTGATGAAGAGTGGTACTATTTAGTCTCCATG 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGTATGATGCTGTCACCAGATGACCTCTCTGATGAAGAGTGGTACTATTTAGTCTCCATG 420
Query 471 TCCTATGTCTTCTCTCCTTCACAATGTTTGCCTGGAAGAGCTTCAGCGACGGGTGAGACC 530
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 421 TCCTATGTCTTCTCTCCTTCTCAATGTTTGCCTGGACGAGCTTCAGCGACGGGTGAGACC 480
Query 531 ATATGGCTCTGCAACGCTCAATATGCGGAGAACAAGCTCTTCTCTCGTTCTTTGTTAGCA 590
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 481 ATATGGCTCTGCAACGCTCAATACGCGGAGAACAAGCTCTTCTCTCGTTCTTTGTTAGC- 539
Query 591 AGAAGCGCATCAATTCAGACTGTTGTGTGTTTCCCTTACTTGGGCGGAGTCATTGAGCTG 650
|| | | ||||||||||||||||||||||||||||| || |||||||||
Sbjct 540 --AA--G---------A-ACTGTTGTGTGTTTCCCTTACTTGGGCGGTGTGATTGAGCTG 585
Query 651 GGCGTCACTGAATTGATTTCAGAAGACCATAACCTGCTTCGAA-ACATCAAATCTTGCTT 709
|||||||||||||||||||| ||||| |||| ||||||| || || | |||||||||||
Sbjct 586 GGCGTCACTGAATTGATTTCGGAAGATCATAGTCTGCTTC-AACACGTAAAATCTTGCTT 644
Query 710 GATGGAAATATCTGCACACCAAGACAACGATGACGAGAAGAAGAT-GGAGATTAAGATCA 768
| ||||||||||||||||||||||||||||||| |||||||| || ||| ||||||||||
Sbjct 645 GTTGGAAATATCTGCACACCAAGACAACGATGATGAGAAGAAAATGGGA-ATTAAGATCA 703
Query 769 GTGAAGAGAAGCATCAGCTTCCATTAGGTATTTCTGATGAAGACTTGCATTACAAAAGAA 828
|||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 704 TTGAAGAGAAGCATCAGATTCCATTAGGTATTTCTGATGAAGACTTACATTACAAAAGAA 763
Query 829 CCATTTCAACAGTACTCAACTACTCCGCAGATAGATCAGGTAAGAACGATAAGAACATTC 888
||||||||||||||||||||||| |||| |||||||| | | |||||||||||
Sbjct 764 CCATTTCAACAGTACTCAACTACGCCGCGGATAGATC-------CA-G-TAAGAACATTC 814
Query 889 GTCATCGTCAGCCAAATATTGTTACTTCTGAACCTGGCTCAAGTTTCTTGCGGTGGAAGC 948
||| ||||| |||| || ||| ||||||| |||||||||||||||||||||||||||
Sbjct 815 ATCACCGTCAACCAAGTACGGTTTCTTCTGATTCTGGCTCAAGTTTCTTGCGGTGGAAGC 874
Query 949 AATGTGAGCAGCAAGTCTCGGGTTTTGTTCAGaaaaaaaaGTCACAGAATGTGTTGCGGA 1008
|||||||||||| || |||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 875 AATGTGAGCAGCCAGACTCGGGTTTTGTTCAGAAAAAACAGTCACAGAATGTTTTGCGGA 934
Query 1009 AGATATTGCATGATGTCCCTTTGATGCACACAAAGAGAATGTTCCCAAGTCAGAACTCTG 1068
|||||||||||||||| || ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 935 AGATATTGCATGATGTTCCATTGATGCACACAAAGAGGATGTTCCCAAGTCAGAAATCTG 994
Query 1069 GTCTGAATCAAGATGATCCTTCAGATAGAAGAAAAGAGAACGAAAAGTTCAGTGTCCTTA 1128
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 995 GTCTGAATCAAGATGATCCTTCGGATACAAGAAAAGAGAACGAAAAGTTCAGTGTCCTTA 1054
Query 1129 GAACTATGGTTCCCACTGTCAACGAGGTTGATAAAGAATCGATACTAAACAACACAATCA 1188
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1055 GAACTATGGTTCCCACTGTCAACGAGGTTGATAAAGAATCGATACTGAATAACACAATCA 1114
Query 1189 AGTACCTGCAAGAACTGGAGGCAAGAGTAGAAGAGCTAGAATCTTGTATGGGATCAGTTA 1248
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1115 AGTACTTGCAAGAACTGGAGGCAAGAGTAGAAGAGCTAGAATCATGTATGGGATCAGTTA 1174
Query 1249 ATTTTGTAGAAAGACAAAGAAAGACGACAGAGAACCTTAACGACTCTGTGTTGATCGAAG 1308
| || ||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1175 ACTTCGTAGAAAGACAAAGAAAGACGCCGGAGAACCTTAACGACTCTGTGTTGATCGAAG 1234
Query 1309 AGACATCAGGGAACTACGATGATAGCACGAAGATCGATGACAATTCAGGAGAAACCGAAC 1368
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1235 AGACATCAGGGAACTACGATGATAGCACGAAGATCGATGGTAATTCAGGAGAAACCGAAC 1294
Query 1369 AAGTCACTGTTTTCAGAGATAAGACACATTTGAGAGTTAAACTCAAAGAAACAGAAGTTG 1428
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1295 AAGTCACTGTTTCCAGAGATAAGACACATTTGAGAGTTAAACTCAAAGAAACAGAAGTTG 1354
Query 1429 TGATCGAAGTAAGATGTTCTTACAGAGACTACATAGTTGCGGACATCATGGAAACTCTGA 1488
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1355 TGATCGAAGTAAGATGTTCTTACAGAGACTACATAGTTGCAGACATCATGGAAACTCTGA 1414
Query 1489 GCAATCTTCACATGGATGCTTTCTCTGTTAGATCTCACACGCTCAATAAGTTCCTCACAT 1548
||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||
Sbjct 1415 GCAATCTTCACATGGATGCTTTCTCTGTTCGATCTCACACACTTAATAAGTTCCTCACAT 1474
Query 1549 TGAATCTCAAGGCCAAGTTTCGCGGGGCTGCAGTTGCGTCCGTAGGAATGATTAAGCGAG 1608
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1475 TGAATCTCAAGGCCAAGTTTCGTGGGGCTGCAGTTGCGTCCGTAGGAATGATCAAGCGAG 1534
Query 1609 AGCTGAGAAGAGTCATTG 1626
||||||||||| ||||||
Sbjct 1535 AGCTGAGAAGAATCATTG 1552
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69705148350
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5