BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00500.1
Length=1809
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943707 jgi|Araly1|943707|scaffold_604251.1 2246 0.0
Ahg490517 jgi|Araly1|490517|fgenesh2_kg.6__3651__AT4G00490.1 108 2e-22
> Ahg943707 jgi|Araly1|943707|scaffold_604251.1
Length=1431
Score = 2246 bits (1216), Expect = 0.0
Identities = 1359/1429 (95%), Gaps = 5/1429 (0%)
Strand=Plus/Plus
Query 216 ATGCTTGCTTGCTTCATAGGTTCTCATGTCGATACTGTGTTGTGTTCCTGTACTTGAATG 275
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1 ATGCTTGCTTGCTTCATAGGTTCTCATGTCGATACTGTGTTGCGTTCCCGTACTTGAATG 60
Query 276 TGTGTACTGCTTGGGTTGTACCCATTGGTTGTGGAAGAAATGTTTATACTCAGCAGGTCA 335
||| || |||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 61 TGTCTATTGCTTGGGTTGTGCCCATTGGCTGTGGAAGAAATGTTTATACTCAGCAGGTCA 120
Query 336 CGAGAGTGAGAATTGGGGATTAGCTACATCTGATGAGTTTGAGCCTATCCCTAGGATCTG 395
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 121 CGAGAGTGAGAATTGGGGATTAGCTACATCAGATGAGTTTGAGCCAATCCCTAGGATCTG 180
Query 396 CCGCTTGATCTTAGCCGTCTATGAGGAGAATCTTCATGACCCTATGTGGGCACCTCCTGA 455
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 181 CCGCTTGATCTTAGCCGTCTATGAGGAGAATCTCCATGACCCTATGTGGGCACCTCCTGG 240
Query 456 TGGTTATGGGATTGATCCAAATCATGTTATTCTGAAGAAAGACTATGACCAGACTGAGGG 515
|||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 241 TGGTTATGGGCTTGACCCAAATCATGTTATTCTCAAGAAAGACTATGACCAGACTGAGGG 300
Query 516 TCGTGTGACGCCTTACATGATCTACTTGGATCATGAGAATGGTGATGTGGTCTTGGCTAT 575
|||||||||||||||||||||||||||||||||||| ||| ||||| | || ||||||||
Sbjct 301 TCGTGTGACGCCTTACATGATCTACTTGGATCATGACAATTGTGATCTAGTTTTGGCTAT 360
Query 576 TAGAGGGCTGAATTTAGCTAAGGAGTGTGATTATGCTGTTCTTCTTGATAACAAACTTGG 635
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TAGAGGGCTGAATTTGGCTAAGGAGTGTGATTATGCTGTTCTTCTTGATAACAAACTTGG 420
Query 636 GCAGACTAAGTTTGATGGAGGTTATGTACATAACGGGTTGTTAAAGGCGGCCATGTGGGT 695
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 421 CCAGACTAAGTTTGATGGAGGTTATGTACATAACGGGTTGTTAAAAGCGGCCATGTGGGT 480
Query 696 TTTTGAAGAGGAGCATGTGGTTCTAAGGGAATTACTCGAGGCAAACCCGAGCTATTCCTT 755
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 481 TTTTGAGGAGGAGCATGTGGTTCTAAGGGAATTACTCGAGGCAAACCCGGGCTATTCCTT 540
Query 756 GACGTTTGTTGGACATTCGTTAGGAGCAGGGGTTGTTTCTTTGCTTGTCTTATTCGTGAT 815
|||||||||||| |||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 541 GACGTTTGTTGGCCATTCGTTGGGTGCAGGGGTTGTGTCTTTGCTTGTCTTATTCGTGAT 600
Query 816 TCAGAACCGGGTTAGGTTGGGGAACATTGAGAGAAAGAGGATTAGATGCTTTGCTATTGC 875
||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 601 TCAGAACCGGGATAGGTTGGGGAACATAGAGAGAAAGAGGATAAGATGCTTTGCTATTGC 660
Query 876 TCCTCCAAGATGTATGTCTCTCCATCTAGCAGTGACATATGCAGATGTCATCAACTCTGT 935
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 661 TCCTCCAAGATGTATGTCTCTCCATCTAGCAGTGACTTATGCAGATGTCATAAACTCTGT 720
Query 936 TGTTCTACAGGATGATTTCTTACCTCGGACTACCACAGCTCTGGAGAATGTCTTCAAGTC 995
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 721 TGTTCTTCAGGATGATTTCTTGCCTCGGACTACCACAGCTCTGGAGAATGTCTTCAAGTC 780
Query 996 AATTATCTGCTTGCCATGCTTGTTGTGTCTCACATGTTTGAAAGATACATTCACATTCGA 1055
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||
Sbjct 781 AATTATCTGCTTGCCATGCTTGTTGTGTCTCACTTGTTTAAAAGATACATTCACATTTGA 840
Query 1056 GGAGAGGAAGCTCAAAGATGCAAGGCGTCTATATGCTCCTGGTAGGTTATACCATATCGT 1115
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 841 GGAGAAAAAGCTCAAAGATGCAAGGCGTCTATATGCTCCTGGTAGGTTATACCACATCGT 900
Query 1116 CGTGCGCAAGCCCTTGAGATTAGGAAGATATCCACCTGTTGTGAGAACAGCTGTCCCAGT 1175
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TGTGCGCAAGCCCTTGAGATTAGGAAGATATCCACCTGTTGTGAGAACAGCTGTCCCAGT 960
Query 1176 TGATGGGAGATTTGAGCAGATTGTTCTCTCCTGTAATGCAACAGCGGATCATGCCATCAT 1235
|||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 961 TGATGGGAGATTTGAGCAGATTGTTCTCTCGTGTAATGCAACAGCAGATCACGCCATCAT 1020
Query 1236 CTGGATTGAAAGGGAATCACAGAGAGCTCTCGATTTAATGGTGGAAGAGGACCAAGTTAT 1295
|||||||||||||||||| |||| |||||| || |||||| |||||||||||||||||||
Sbjct 1021 CTGGATTGAAAGGGAATCGCAGACAGCTCTTGAGTTAATGTTGGAAGAGGACCAAGTTAT 1080
Query 1296 GCAGATTCCGGTGGAGCAGAAAATTGTACGCCAGAAATCAATTGTTGAGGATCATGACGA 1355
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1081 GCAGATTCCGGTGGAGCAGAAAATCGTGCGCCAGAAATCAATTGTTGAGGATCATGACGA 1140
Query 1356 AGAATACAGAGCGGCTATAATGAAAGCAGCTTCTCTGAACATCCCCATGTCTCCATCGCC 1415
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1141 AGAATACAAAGCGGCTATAATGAAGGCAGCTTCTCTGAACATCCCCATGTCTCCATCACC 1200
Query 1416 GTCTTATGGAACATTCCATGATACAGAAGAAGGAGAAAGCTCTGCAGGATCAGGCATGGA 1475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 GTCTTATGGAACATTCCATGATACAGAAGAAGGAGAAAGCTCTGCAGGATCAGGCATGGA 1260
Query 1476 AGGATCCCCTTCCGGGTGGTCCTTCAAAGGAATGAGAAGAAAATGGGATCAATTCATAGA 1535
||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1261 AGGATCCCCGTCCCGGTGGTCCTTCAAAGGAATGAGAAAAAAATGGGATCAATTCATAGA 1320
Query 1536 TTGCCATTTTCCTGTAAATGACAACAGTGAACATATGATCTTCAA-AAATCAGGAATC-T 1593
|||||||||||||||||||||| |||| |||||||| |||||||| ||| | ||||| |
Sbjct 1321 TTGCCATTTTCCTGTAAATGACCACAGAGAACATATAATCTTCAAGAAAA-ATGAATCAT 1379
Query 1594 CAAGCTTTGTTGTGTGGTCAAGAAACATGA-AAATCTTGTTATAGGTGT 1641
|| ||||||||||||||||||||||||| | ||||| || |||||||||
Sbjct 1380 CA-GCTTTGTTGTGTGGTCAAGAAACATTATAAATCGTGGTATAGGTGT 1427
> Ahg490517 jgi|Araly1|490517|fgenesh2_kg.6__3651__AT4G00490.1
Length=1876
Score = 108 bits (58), Expect = 2e-22
Identities = 60/61 (98%), Gaps = 0/61 (0%)
Strand=Plus/Minus
Query 1748 AGCCTGTAATGTTGCTAGCAATTTCTTCTGAAATATCAATGGACATACCACTTATATTGT 1807
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1876 AGCCTGTAATGTTGCTAGCAATTTCTTCTGAAATATCAATGGACATAACACTTATATTGT 1817
Query 1808 T 1808
|
Sbjct 1816 T 1816
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67914906835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5