BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00520.2
Length=1515
Score E
Sequences producing significant alignments: (Bits) Value
Ahg895972 jgi|Araly1|895972|Al_scaffold_0006_3968 1834 0.0
> Ahg895972 jgi|Araly1|895972|Al_scaffold_0006_3968
Length=1278
Score = 1834 bits (993), Expect = 0.0
Identities = 1191/1286 (93%), Gaps = 16/1286 (1%)
Strand=Plus/Plus
Query 33 ATGAACACTGAATCAGTTGTCGAGTTCCTTGGGAATGTGA-CCTTGTTGCAGCGGTTACC 91
|||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||
Sbjct 1 ATGAACACTGAATCAGTTGTCGAGTTCCTTGGGAATGT-ACCCTTATTGCAGCGGTTACC 59
Query 92 TAGTTCCTCTCTGAAGAGAATCTCCGAAGTCGTTGTCTTCAAAGGTTATGACAGAGGTGA 151
|||||| ||||| | ||||||| | ||||| |||||||||||| ||||||| ||||||||
Sbjct 60 TAGTTCTTCTCTCACGAGAATCGCTGAAGTTGTTGTCTTCAAACGTTATGAGAGAGGTGA 119
Query 152 TTATGTGGTTCGTGAAAATCAAAATGTGGATGGAGTTTATTTTCTCTTGCAAGGACAGGC 211
||||||||||||| ||||||| |||| ||||||||||||||||||||| ||||||||||
Sbjct 120 TTATGTGGTTCGTAAAAATCAGGATGTAGATGGAGTTTATTTTCTCTTGGAAGGACAGGC 179
Query 212 TCAGGTTCTGAGATCAGCCGGAGAGGAAAACTATCAAGAGTTCCCTTTGAAACGATAT-G 270
|||||||||||||||||| ||||||||||||| |||| |||||| ||||||||||| | |
Sbjct 180 TCAGGTTCTGAGATCAGCTGGAGAGGAAAACTCTCAACAGTTCCTTTTGAAACGAT-TCG 238
Query 271 ATTTCTTCGGCCATGGTATTTTCGGGGATGTTTACTCAGCAGATGTTGTTGCTGTGACAG 330
|||||||||||| ||||||||| ||||||||||||||||||||||||||||| || |||
Sbjct 239 ATTTCTTCGGCCCTGGTATTTTTGGGGATGTTTACTCAGCAGATGTTGTTGCAGTCTCAG 298
Query 331 AGCTTACCTGCTTGCTGTTGATGTCTGATCATCGTGCTTTACTTGA-AATAAAGTCAGTC 389
|||| |||||||| ||||||||||||||||||||||||| ||||| || ||||||||||
Sbjct 299 AGCTCACCTGCTTATTGTTGATGTCTGATCATCGTGCTTTGCTTGAGAA-AAAGTCAGTC 357
Query 390 TCGGATTCAGATAAGGAACGCTGTCTTGTGGAAGACATACTATATCTAGAACCATTAGAT 449
|||||||||||||||||||| |||||||||||| ||||| | ||||||||||||||||||
Sbjct 358 TCGGATTCAGATAAGGAACGATGTCTTGTGGAACACATATTGTATCTAGAACCATTAGAT 417
Query 450 TTGAATGTATACCGGGGGTTCACCCCACCTAATGCTCCAACCTATGGAAAGGTTTATGGA 509
|||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 418 TTGAATGTATTCCGGGGGTTCACTCCACCCAATGCTCCAACCTATGGAAAGGTTTATGGA 477
Query 510 GGGCAATTAGTTGGACAGGCACTTGCCGCAGCATCAAAAACTGTTGAAACTATGAAGATA 569
||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 478 GGGCAGTTAGTTGGACAGGCACTCGCCGCAGCATCAAAAACTGTTGAAAATATGAAGATA 537
Query 570 GTCCATAATTTTCATTGCTATTTCCTTCTTGTTGGAGATATAAATATTCCCATCATATAT 629
||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 538 GTCCATAATTTACATTCCTATTTCCTTCTTGTTGGAGAGATAAATATTCCCATCATATTT 597
Query 630 GATGTTAACCGCTTACGTGACGGCAACAACTTTGCCACCAGAAGTGTAGATGCTAGACAG 689
|| |||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 598 GAAGTTATCCGCTTACGTGACGGCAATAACTTTGCCACCAGAAGAGTAGATGCTAGACAG 657
Query 690 AAAGGAAAAACTATATTCACCTTGTTCGCGTCATTTCAGAAAAAGCAACAAGGTTTTATT 749
||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 658 AAAGGAAAAACCATATTCATCTTGTTCGCGTCATTTCAGAGAAAGCAACAAGGTTTTATT 717
Query 750 CACCAGGAGTCGACCATGCCTCATACACCAGCTCCTGAAACGCTTCTACCAAGGGAGGAG 809
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 718 CACCAGGAGTCGATCATGCCTCATACACCAGCTCCTGAAATGCTTCTACCAAGGGAGGAG 777
Query 810 ATGCTTGAACGGCTTGTTACTGAGCCTCTGCTACCTAGGGATTACCGAAACCAAGTTGCA 869
|||||||| |||| | | ||||| ||||| ||||||||||||||||||||| ||||||||
Sbjct 778 ATGCTTGAGCGGCGTATAACTGACCCTCTTCTACCTAGGGATTACCGAAACAAAGTTGCA 837
Query 870 ACTGAAATTAGTG-TTCCATTCCCTATAGATATTCGATTTTGTGAGCCAAATCGTTCCAC 928
| |||||||| || || ||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 838 AATGAAATTAATGCTT-CATTCCCTATAGATATTCGATTTTGTGAGCCAAATTATTCTAC 896
Query 929 TA-AACAGA-ATAAGTCTCCTCCAAGACTAAAATATTGGTTTAGAGCAAAGGGAAAACTT 986
| |||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 897 -AGAACAGACA-AAGTCTCCTCCAAGACTGAAATATTGGTTTAGAGCAAAGGGAAAACTT 954
Query 987 TCTGATGATGATCAAGCTTTGCACAGATGTGTGGTTGCATTTGCTTCCGATTTGATATTC 1046
|||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||
Sbjct 955 TCTGATGATGATCAAGCTTTGCACAGATGTGTGGTTGCGTATGCTTCAGATTTGATATTC 1014
Query 1047 GCCACTATCAGTTTAAACCCTCACCGGAGAGAGGGCATGAGTGTAGCTGCTCTTAGCCTG 1106
||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 1015 GCCTCTATCAGTTTAAACCCTCACCGCAGAGAGGGCATGCGTGTAGCTGCTCTTAGCCTG 1074
Query 1107 GACCACTCGATGTGGTTCCACCGACCTGTAAGAGCAGATGATTGGTTGTTGTTTGTGATA 1166
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1075 GACCACTCGATGTGGTTCCACCGACCTCTAAGAGCTGATGATTGGTTGTTGTTTGTGATA 1134
Query 1167 GTGAGTCCAA-CTGCGA-CCGAAAGCCGCGGTTTTGCAACTGGCAAAATGTTCAACAGAA 1224
|||||||||| | || | ||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1135 GTGAGTCCAATC-GC-ATCCGAAAGCCGCGGTTTTGCCACTGGAAAAATGTTCAACAGAA 1192
Query 1225 AGGGAGAGCTGGTGGTATCATTGACGCAAGAAGCTGTGTTAAGAGAAGCTGTGACTATTA 1284
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1193 AGGGAGAGCTGGTGGTATCATTGACGCAAGAAGCTGTGCTAAGAGAAGCTGTGACTATAA 1252
Query 1285 AGCCATCCTTCGGGGCCAAGCTATGA 1310
|||| |||||||| || ||||| |||
Sbjct 1253 AGCCCTCCTTCGGCGCGAAGCTCTGA 1278
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56716374805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5