BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00525.1
Length=675
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490514 jgi|Araly1|490514|fgenesh2_kg.6__3648__AT4G00525.1 697 0.0
> Ahg490514 jgi|Araly1|490514|fgenesh2_kg.6__3648__AT4G00525.1
Length=596
Score = 697 bits (377), Expect = 0.0
Identities = 494/546 (90%), Gaps = 25/546 (5%)
Strand=Plus/Plus
Query 83 ATGGAATCAATGGCTTC-AGATCCCGAACTTGACATGGATGAAGGAGATCTGGAGA-AAT 140
|||||||| |||| || |||||| |||||||| |||||||||||||||||||||| ||
Sbjct 61 ATGGAATCCATGG-GTCTAGATCCGGAACTTGAGATGGATGAAGGAGATCTGGAGACAA- 118
Query 141 TGGAGTCAGATGTGAAGCAGATGGCCAAGAAGATCTCCGAGTACAGGCAAACCCTACCGG 200
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 119 TGGAGTCAGATGTGAAGCAGATGGCGAAGAAGATATCCGAGTACAGGCAAACCCTACCGG 178
Query 201 ATCATCTCAGGAACACTCTTGATTCTGCGCTATCTTCCCACATACCCGTTTTCCCCAACA 260
|||||||||||||||| |||||||||||||| ||||| ||| ||||||||||||||||||
Sbjct 179 ATCATCTCAGGAACACCCTTGATTCTGCGCTTTCTTCTCACTTACCCGTTTTCCCCAACA 238
Query 261 TCGATTCCGGGTCGGATCCTCTTCCGTCGT-CATGCCTCACTATCGCAGAAGCACAGGTA 319
|||||||||||||||||||||| ||||| | | ||||||||||||||||||| || ||
Sbjct 239 TCGATTCCGGGTCGGATCCTCTGCCGTC-TCCGTGCCTCACTATCGCAGAAGTAC--CTA 295
Query 320 CCT-GG-T--GTGTTGGAAGAGCAAGACTCTGAAGAGAAATGGATTCAGCTCAAGGAAAG 375
| || | | | |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 296 -TTGGGTTAGGAACT-GAAGAGCAAGACTCTGGAGAGAAATGGATTCAGCTCAAGGAAAG 353
Query 376 AATGTCGAGGAACGCTGCGAATATACCTAAAGTTGTAAAGAGAATGCGAGAATGTATAGA 435
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 AATGTCGAGAAACGCTGCGAATATACCTAAAGTTGTAAAGAGAATGCGAGAATGTATAGA 413
Query 436 GAGTATCGACAAACTCGATTCTTTGGA-AGTTACCATTCACCCGGCATTCAAAAGGCAAA 494
|||||||||||||||||||||||| || | ||||||||||||||||||||| ||||| ||
Sbjct 414 GAGTATCGACAAACTCGATTCTTTAGACA-TTACCATTCACCCGGCATTCAGAAGGCGAA 472
Query 495 GAATTAACTGACTATTTCTCCTTCATGCTTAGGCTCTCCATAGTA-T-TTTCTTAGGAAA 552
||||||||||||||||||||||||| ||| ||||||||||||||| | ||||||||||||
Sbjct 473 GAATTAACTGACTATTTCTCCTTCAGGCTGAGGCTCTCCATAGTAGTATTTCTTAGGAAA 532
Query 553 GATATGTGTGCTGATTTGTGAATATGTAATTCTAGATT-GAT----CTGGCATGTACATT 607
|| ||||| ||||||||| |||||||||||||||||| ||| ||||||||||||||
Sbjct 533 GACATGTG--CTGATTTGTTAATATGTAATTCTAGATTAGATTGATCTGGCATGTACATT 590
Query 608 GGTGTC 613
||||||
Sbjct 591 GGTGTC 596
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24779896050
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5