BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G00525.1 Length=675 Score E Sequences producing significant alignments: (Bits) Value Ahg490514 jgi|Araly1|490514|fgenesh2_kg.6__3648__AT4G00525.1 697 0.0 > Ahg490514 jgi|Araly1|490514|fgenesh2_kg.6__3648__AT4G00525.1 Length=596 Score = 697 bits (377), Expect = 0.0 Identities = 494/546 (90%), Gaps = 25/546 (5%) Strand=Plus/Plus Query 83 ATGGAATCAATGGCTTC-AGATCCCGAACTTGACATGGATGAAGGAGATCTGGAGA-AAT 140 |||||||| |||| || |||||| |||||||| |||||||||||||||||||||| || Sbjct 61 ATGGAATCCATGG-GTCTAGATCCGGAACTTGAGATGGATGAAGGAGATCTGGAGACAA- 118 Query 141 TGGAGTCAGATGTGAAGCAGATGGCCAAGAAGATCTCCGAGTACAGGCAAACCCTACCGG 200 ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 119 TGGAGTCAGATGTGAAGCAGATGGCGAAGAAGATATCCGAGTACAGGCAAACCCTACCGG 178 Query 201 ATCATCTCAGGAACACTCTTGATTCTGCGCTATCTTCCCACATACCCGTTTTCCCCAACA 260 |||||||||||||||| |||||||||||||| ||||| ||| |||||||||||||||||| Sbjct 179 ATCATCTCAGGAACACCCTTGATTCTGCGCTTTCTTCTCACTTACCCGTTTTCCCCAACA 238 Query 261 TCGATTCCGGGTCGGATCCTCTTCCGTCGT-CATGCCTCACTATCGCAGAAGCACAGGTA 319 |||||||||||||||||||||| ||||| | | ||||||||||||||||||| || || Sbjct 239 TCGATTCCGGGTCGGATCCTCTGCCGTC-TCCGTGCCTCACTATCGCAGAAGTAC--CTA 295 Query 320 CCT-GG-T--GTGTTGGAAGAGCAAGACTCTGAAGAGAAATGGATTCAGCTCAAGGAAAG 375 | || | | | |||||||||||||||| ||||||||||||||||||||||||||| Sbjct 296 -TTGGGTTAGGAACT-GAAGAGCAAGACTCTGGAGAGAAATGGATTCAGCTCAAGGAAAG 353 Query 376 AATGTCGAGGAACGCTGCGAATATACCTAAAGTTGTAAAGAGAATGCGAGAATGTATAGA 435 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 354 AATGTCGAGAAACGCTGCGAATATACCTAAAGTTGTAAAGAGAATGCGAGAATGTATAGA 413 Query 436 GAGTATCGACAAACTCGATTCTTTGGA-AGTTACCATTCACCCGGCATTCAAAAGGCAAA 494 |||||||||||||||||||||||| || | ||||||||||||||||||||| ||||| || Sbjct 414 GAGTATCGACAAACTCGATTCTTTAGACA-TTACCATTCACCCGGCATTCAGAAGGCGAA 472 Query 495 GAATTAACTGACTATTTCTCCTTCATGCTTAGGCTCTCCATAGTA-T-TTTCTTAGGAAA 552 ||||||||||||||||||||||||| ||| ||||||||||||||| | |||||||||||| Sbjct 473 GAATTAACTGACTATTTCTCCTTCAGGCTGAGGCTCTCCATAGTAGTATTTCTTAGGAAA 532 Query 553 GATATGTGTGCTGATTTGTGAATATGTAATTCTAGATT-GAT----CTGGCATGTACATT 607 || ||||| ||||||||| |||||||||||||||||| ||| |||||||||||||| Sbjct 533 GACATGTG--CTGATTTGTTAATATGTAATTCTAGATTAGATTGATCTGGCATGTACATT 590 Query 608 GGTGTC 613 |||||| Sbjct 591 GGTGTC 596 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24779896050 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5