BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G00530.1

Length=371
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg327720 jgi|Araly1|327720|fgenesh1_pm.C_scaffold_6002940           366    5e-101


> Ahg327720 jgi|Araly1|327720|fgenesh1_pm.C_scaffold_6002940
Length=216

 Score =  366 bits (198),  Expect = 5e-101
 Identities = 210/216 (97%), Gaps = 0/216 (0%)
 Strand=Plus/Plus

Query  54   ATGAATCCTCAAACCGATAAAGTGGTGAGAAGAACGACGATGGTGGCGACTGCTGTTGCT  113
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGAATCCTCAAACCGATAAAGTGGTGAGAAGAACGACGATGGTGGCGACTGCTGTTGCT  60

Query  114  TCCTACTTTCTCTTAACCGGCGATTACGGTCCCGAACCCAACGTTCTTGATCCCATCAAA  173
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TCCTACTTTCTCTTAACTGGCGATTACGGTCCCGAACCCAACGTTCTTGATCCCATCAAA  120

Query  174  AGGAAGATATTAGCAGCACAAGATTCTGTGAAGCAATTCATCTTTGGACCAAAGGGAGAG  233
            |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct  121  AGGAAGATATTATCAGCACAAGATTCTGTCAAGCAATTCATCTTTGGACCAAAGGGAGGG  180

Query  234  CCATCTGGTAAAGAACCATCTGACACTGCTAAATGA  269
            |||||||| ||||||| |||||||||||||||||||
Sbjct  181  CCATCTGGGAAAGAACAATCTGACACTGCTAAATGA  216



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13239989383


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5