BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00540.1
Length=1540
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490512 jgi|Araly1|490512|fgenesh2_kg.6__3646__AT4G00540.2 1290 0.0
> Ahg490512 jgi|Araly1|490512|fgenesh2_kg.6__3646__AT4G00540.2
Length=1425
Score = 1290 bits (698), Expect = 0.0
Identities = 1112/1299 (86%), Gaps = 79/1299 (6%)
Strand=Plus/Plus
Query 157 TTTCTTC--TATATTCTCGTT-AGTTGAGGCTGTTATTTAGGGTTTTAGGTTTTGTCAAT 213
||||||| |||||||||||| || || |||||||| ||||||||||| |||||
Sbjct 99 TTTCTTCGATATATTCTCGTTAAGATGTGGCTGTTAATTAGGGTTTTA-------TCAAT 151
Query 214 TTC-TGAAAGACTTATGACAGAGTCTATTGATTTAAATCGATCAGAGTCCGAGTCTGATA 272
||| || | || |||||||||| || ||||||| |||||||| |||||||| |||||||
Sbjct 152 TTCTTG-AGGAATTATGACAGAACCTTTTGATTTGAATCGATCCGAGTCCGAATCTGATA 210
Query 273 ACAACACCGACGACGTTACTCCTATTTTTGCAATTGATGACTC-T-TCAA--A-A-GGAA 326
|||||| || |||||| ||||| ||||||||||||| |||| | |||| | | |||
Sbjct 211 ACAACA---ACAACGTTATTCCTACTTTTGCAATTGATAACTCTTCTCAAGGATACAGAA 267
Query 327 GAGTGAGTGGTCCTACTAGAAGATCAACTAAAGGAGGATGGACAGCCGAAGAGGACCAAA 386
||||||||||||| || |||||||||||||||||||||||||| ||||||||||| |||
Sbjct 268 GAGTGAGTGGTCCGACCCGAAGATCAACTAAAGGAGGATGGACATCCGAAGAGGACAAAA 327
Query 387 TTTTGACGAATGTTGTG-AAGAAGTACCAAGG-GAGGAACTGGAAAAGGATTGCTGAATG 444
|||||||||| | |||| || | ||| | ||| || ||||||||||| |||||||||||
Sbjct 328 TTTTGACGAAAGCTGTGCAA-ATGTA-CGAGGAGAAGAACTGGAAAAAAATTGCTGAATG 385
Query 445 CCTTCCTGGGTCGG-AAGAGAATAGGAGGAATGATGTCCAATGTCAGCACCGTTGGCTTA 503
||||| | ||| ||||||| |||||||||||||| |||||||||||||||||||| |
Sbjct 386 TCTTCCCAAG-CGGAAAGAGAAGAGGAGGAATGATGTTCAATGTCAGCACCGTTGGCTAA 444
Query 504 AGGTTCTTGATCCAAG-CCTCCAA-AAAGGAGCTTGGAAAAAAGAGGAAGATGAACTCTT 561
| |||||| |||| || ||| ||| ||||||||||||| |||| | |||||||| |||||
Sbjct 445 AAGTTCTTCATCC-AGACCT-CAACAAAGGAGCTTGGAGAAAATATGAAGATGATCTCTT 502
Query 562 AAGTGAGTTGGTTAAAGATTATATGGAGAATGATAGGCCTCCATGGTCAAAAATTTCAAA 621
|||||| |||||||| || ||||||||||| |||| ||||| |||||| |||||| ||||
Sbjct 503 AAGTGAATTGGTTAAGGAATATATGGAGAAAGATAAGCCTCAATGGTCGAAAATTGCAAA 562
Query 622 GGAACTCCCTGGTCGCATCGGCAAGCAATGCCGCGAAAGGTGGCATAATCATTTGAATCC 681
|||||||||||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct 563 ACAACTCCCTGGTCGCATCGGCAAGCAATGTCGTGAAAGGTGGCATAATCATTTAAATCC 622
Query 682 GACTATTATAAAATCTCCATGGACTAGAGAAGAGGAATTAATTCTCGTTCAAGCACAAAG 741
|||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 623 GACTATTAGAAAAACTCCATGGACTAGAGAAGAGGAATTAATTCTCGTTCAAGCGCAAAG 682
Query 742 AGGAA-ACGGCAACAAATGGGCAGAGATTGCCAAGCTATTGCCTGGAAGGACGGAGAATA 800
|| || | ||||| || |||||||||||||||||||| ||| |||||||||| |||||||
Sbjct 683 AG-AACATGGCAATAAGTGGGCAGAGATTGCCAAGCTCTTGTCTGGAAGGACAGAGAATA 741
Query 801 ATATTAAGAACCATTGGAATTGTTCAGTTAAGAAAAGGCTAGA-GCAGTTTCCTAGTAAC 859
||||||||||||| ||||| || ||||||||||| || | || ||||||||||||||||
Sbjct 742 ATATTAAGAACCACTGGAACTGCTCAGTTAAGAAGAGATT-GAAGCAGTTTCCTAGTAAC 800
Query 860 CTCTTCTCTGGTGTGGTCTATGGTTCTAAACCTAGTTCTGGTTTTGAATACAACTTTTTC 919
|||||||||||||| | || | || ||||| | | ||||||||||||||||
Sbjct 801 CTCTTCTCTGGTGT---C-AT----C-AA---TAGTTGTAGACATGAATACAACTTTTTC 848
Query 920 AATCAAAGAAACACGATGGTCGAGAGTTGCATAACATCACAAATCAAGGAAGCTGCAAAG 979
|||||||| |||||||||| ||||||||||||||||| |||||||||||||||| ||||
Sbjct 849 AATCAAAGCAACACGATGGCCGAGAGTTGCATAACATTTCAAATCAAGGAAGCTGAAAAG 908
Query 980 AGTCCTCAAAGGGATTTCTTGGATTTAACTTTAGGACT---GAATTGGAGGAGCATTTCT 1036
||||||||||| |||| |||||| |||||||||||||| ||||||||||| || ||
Sbjct 909 AGTCCTCAAAGAGATTCCTTGGAGTTAACTTTAGGACTTATGAATTGGAGGAACACGCCT 968
Query 1037 TCATCCACAAGCTCTCTTAGAGGAGAAGAATCAGTCTCATCATCAGTAGACTCAGTTTG- 1095
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 969 TCATCCACAAGCTCTCTTAGAGGAGAAGAATCAGTCTCATCATCAGTAGAATCAGATTGG 1028
Query 1096 TGCAAGACTCAATG---C-GTGT-T-TAGAAACTCCACAGAACAGCAACAACGATACTGT 1149
| |||||||||||| | | | | ||||||||||||||| |||||||||||||| |||
Sbjct 1029 T-CAAGACTCAATGTATCAGAGAGTGTAGAAACTCCACAGAGCAGCAACAACGATAATGT 1087
Query 1150 GTGCGTAAAGGAAGTGAGGGAGATGAAAGAGAGACTTAGAATGGCTGCGAGGACTTTCGA 1209
||||||||||||||||| ||||||| |||||||||| || ||||||||||| |||||| |
Sbjct 1088 GTGCGTAAAGGAAGTGAAGGAGATGCAAGAGAGACTGAGGATGGCTGCGAGTACTTTCAA 1147
Query 1210 CACACCCTCCATTATCTCCAAAACAAGCTCACCAGCTTCAGGTTTGAAACGGCTCAGACA 1269
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1148 CACACCCTCCATTATCTCCAAAAGAAGCTCACCAGCTTCAGGTTTGAAACGGCTCAGACA 1207
Query 1270 AAAATACGATACACCGTTTCCAACAGATGCTCGAAGTCACATGTCAAGTGAGGAAGATCA 1329
|||| |||| || ||||||| || |||||||||||||||||||||||| |||||| | |
Sbjct 1208 AAAAGACGACACGCCGTTTCAAATAGATGCTCGAAGTCACATGTCAAGCGAGGAA-A--A 1264
Query 1330 CTCAGTTTCAGCTTCTCCTTCATCCAAATACAGATTTGTGAAACGCAACACCTGCTCTGG 1389
|||| || || || ||||||||||||| |||||||| ||||||||
Sbjct 1265 G-CAGT--CAA-TT-TC----ATCCAAATACAGA---------CGCAACACTTGCTCTGG 1306
Query 1390 CTCAAAACCCTTGGAGAGGCGTTTAGATTTTGACTTTCT 1428
|||||||||||||||||||||||||||||||||||||||
Sbjct 1307 CTCAAAACCCTTGGAGAGGCGTTTAGATTTTGACTTTCT 1345
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57668630930
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5