BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00560.4
Length=1218
Score E
Sequences producing significant alignments: (Bits) Value
Ahg895963 jgi|Araly1|895963|Al_scaffold_0006_3959 1343 0.0
> Ahg895963 jgi|Araly1|895963|Al_scaffold_0006_3959
Length=972
Score = 1343 bits (727), Expect = 0.0
Identities = 893/969 (92%), Gaps = 27/969 (3%)
Strand=Plus/Plus
Query 100 AAAGTGCTAATTGTGGGAGGTACTGGATACTTGGGTCAGCATCTTCTTCAAGCTTTCGCC 159
|||||| ||||||| |||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 13 AAAGTGGTAATTGTCGGAGGTACGGGATACTTGGGTCAGCATCTGCTTCAAGCTTTCGCC 72
Query 160 GGCAACTATGGCGGTGAATGTGAGCTATACGACGTCGCTTTCACTCACCATTCTTCTCCA 219
|||||| ||||||||| | | |||||||||||||||||||||||||| |||||||||
Sbjct 73 GGCAACAATGGCGGTG-A--T---CTATACGACGTCGCTTTCACTCACCACTCTTCTCCA 126
Query 220 CTT-CCCGCTCGTTTGCTCGACGCTTTCCCTCATTCCCCCGCGTTTCCTGTCGATCTTAA 278
||| ||||| ||||| |||||||| |||||||||| ||||||||||||||||||||| ||
Sbjct 127 CTTCCCCGC-CGTTTACTCGACGCATTCCCTCATTTCCCCGCGTTTCCTGTCGATCTCAA 185
Query 279 ATCCGGTCTAGGGCTCAATTCCATATCCCAGGACTTTCGTCAGCCTGATGTGGTCGTGAA 338
||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 186 ATCCGGTTTAGGGTTCAATTCCATATCCCAGGACTTTGGTCAGCCTGATGTGGTCGTGAA 245
Query 339 TTGTGCTGCTCTGTCTGTCCCACGAGCTTGCGAGCAAGATCCAGATTCCGCCATGTCCAT 398
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 246 TTGTGCTGCTCTGTCTGTTCCACGAGCTTGCGAGCAAGATCCAGATTCCGCCATGTCCAT 305
Query 399 CAACGTACCTACTTCTCTTGTAAACTGGTTATCAAGTTTTGAGACTAACAAAACCTTGTT 458
|||||| ||| ||| |||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 306 CAACGTGCCTTCTTGTCTTGTAAACTGGTTATCAACTTTTGAGAGAAACAAAACCTTGTT 365
Query 459 GATTCATCTCTCTACTGATCAAGTTTATCAAGGTGTCAAGTCTTTCTACAAGGAAGAAGA 518
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 366 GATTCATCTCTCTACTGATCAAGTATATGAAGGTGTCAAGTCTTTCTACAAGGAAGAAGA 425
Query 519 TGAGACTGTTGCAGTCAACGTTTATGGGAAATCAAAAGTTGCAGCAGAGCTTCTCATCAA 578
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 426 TGAGACTGTTGCAGTCAATGTTTATGGGAAATCAAAAGTTGCAGCAGAGCTTCTCATCAA 485
Query 579 GGATAAGTGTCA-AAGCTTTGCAATATTGAGAAGTAGTATCATCTTTGGTCCTCAAACTG 637
|||||||||||| || |||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 486 GGATAAGTGTCAGAA-CTTTGCAATACTGAGAAGTAGTATCATCTTTGGTCCTCAGACTG 544
Query 638 TATCACCTCTCCCCAAGACTCTCCCAATTCAGTGGATTGATAGCTCCTTAAAGAAAGGG- 696
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 545 TATCACCTCTCCCAAAGACTCTCCCAATTCAGTGGATTGATAGCTCCTTGAAGAA-GGGA 603
Query 697 GACACGGTAGACTTCTTCCATGACGAGTTTCGTTGCCCCATTTACGTTAAGGATCTTGTG 756
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 604 GACACGGTAGAGTTCTTCCATGATGAGTTTCGTTGCCCCATTTACGTTAAGGATCTCGTG 663
Query 757 AATATCACTTTCAAATTAATAGACAGATGGGTC-TCT--GATGATAAACAGATGCGGCTA 813
||||||||||| ||||||||||||||||||||| ||| ||||| |||||||||| |||
Sbjct 664 AATATCACTTTGAAATTAATAGACAGATGGGTCGTCTCAGATGAAAAACAGATGCAGCTG 723
Query 814 GTTCTGAATGCTGGTGGACCCGAGAGGCTATCTCGTGTTCAAATGGCTCAAATGGTTGCA 873
||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 724 GTTTTGAATGCTGGTGGACCTGAGAGGCTATCTCGTGTTCAAATGGCTCAAGTGGTTGCA 783
Query 874 GAAGTCAGAGGATACGACCTGTCCTTGATTAAACATGTGTCTGCATCATCGCTATTTTGT 933
|||||||||||||||||| |||| ||||||||||||||||||||||||||| ||
Sbjct 784 GAAGTCAGAGGATACGACATGTCTTTGATTAAACATGTGTCTGCATCATCG-------GT 836
Query 934 CAGATTGATCGTGGCGTAGTGTCACCAGCAGATATATCTATGGACATAACTAAACTGATT 993
| ||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 ----T-GATCGAGGTGTGGTGTCACCAGCAGATATATCTATGGACATAACTAAACTGATT 891
Query 994 CATACACTTGAGCTCTCTCCAACTTCTTTCAAGGAAGGTGTTAGGTTAACGCTTGACTCT 1053
|| ||||||||| ||||||||||||||||||| || |||||||| ||||| ||||| |||
Sbjct 892 CAGACACTTGAGATCTCTCCAACTTCTTTCAAAGATGGTGTTAGATTAACCCTTGAGTCT 951
Query 1054 GAATCTCAT 1062
|||||||||
Sbjct 952 GAATCTCAT 960
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45480639981
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5