BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00580.1
Length=954
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924087 jgi|Araly1|924087|scaffold_105368.1 514 5e-145
Ahg337696 jgi|Araly1|337696|fgenesh1_pg.C_scaffold_1004261 496 2e-139
Ahg913200 jgi|Araly1|913200|Al_scaffold_0001_3454 165 5e-40
Ahg892980 jgi|Araly1|892980|Al_scaffold_0006_976 165 5e-40
Ahg346389 jgi|Araly1|346389|fgenesh1_pg.C_scaffold_4002731 159 3e-38
Ahg950324 jgi|Araly1|950324|scaffold_802211.1 152 4e-36
> Ahg924087 jgi|Araly1|924087|scaffold_105368.1
Length=1640
Score = 514 bits (278), Expect = 5e-145
Identities = 476/567 (84%), Gaps = 32/567 (6%)
Strand=Plus/Plus
Query 305 GTGAAGCAGTTGAGaaaaaaaCGAGGAAGAGAAAATCGAAAAGTGCCAACAATAGTAGAA 364
|||||| || |||||| ||| ||| |||||||||||| |||||| || |||| |||||||
Sbjct 112 GTGAAGTAGCTGAGAAGAAAGCGAAGAAGAGAAAATCAAAAAGTTCCGACAAAAGTAGAA 171
Query 365 AGAAACTCTCCATAGAGACGCCAACGGAAGCAAAAGGCCTTGAAAGTGGTGAGGGAACTG 424
|||||| |||| ||||||| ||||| |||||||||| | ||||| || ||||||| ||
Sbjct 172 AGAAACCCTCCGTAGAGACACCAACAGAAGCAAAAGACGATGAAAAAGGCGAGGGAAGTG 231
Query 425 TCACTAGGTTGGAAGAGAATCAG-AATATTTGTGATGTAGATCAAGAGGAACCTGTCGAT 483
|||||| ||| |||||| ||| || |||||||||| ||| |||||||| ||||| |||
Sbjct 232 GCACTAGAATGGGAGAGAACCAGCAA-ATTTGTGATGCAGACCAAGAGGAGCCTGTTGAT 290
Query 484 GGTCATACCATAGATGTTGAGGCCAAG-ATTGATCTT-TCAGGGACAATCGAACAAGACG 541
|||||| ||| |||||||||||| || |||||||| | |||||||| |||||||||
Sbjct 291 GGTCATTTCATTGATGTTGAGGCC-AGTCTTGATCTTAT-GGGGACAATGGAACAAGAC- 347
Query 542 ACGTTCAAAAGGAGGTAGCAAATGCTGATTTAAACATGA-T--TGACCAAGACAAGGATC 598
| ||||||||||||||| ||||||||||||| ||||| | ||||||||| |||||||
Sbjct 348 -C-TTCAAAAGGAGGTAGGAAATGCTGATTTAGTCATGATTGATGACCAAGAGAAGGATC 405
Query 599 TT--G-AA-----AA------T-GATAATCTTCTAGCTGAATTAAACCAA-ACTAGTGAT 642
|| | || || | ||||||||| || |||||||||||||| | || ||||
Sbjct 406 TTGAGAAAGCTTTAATGGTTGTGGATAATCTTTTAACTGAATTAAACCAATA-TACTGAT 464
Query 643 GATGCTGAGAAAGAAGGGATCATAG--G-TCTTGTTAATGCTACTTCTGAAGCTATTGAA 699
|||| |||||| ||||| |||||| | |||||||||||||||||||||||| ||| ||
Sbjct 465 GATGTTGAGAACGAAGGTCTCATAGTAGATCTTGTTAATGCTACTTCTGAAGCAATTAAA 524
Query 700 AACGAAACTGAGATGAGTGTCAAGGAAAAAGATGGTGATGAGGAGGCTAAATCTGAGAAG 759
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 525 AACGAAACTGAGATGGGAACCAAGGAAAAAGATGGTGATGAGGAGGCTAAATCTGAGAAG 584
Query 760 CCTAAAAAGAAAAATAGAGCAAAGAAAGTCAAGACTCCGACTAAAGAAGATGGTCTAGTT 819
||||| |||||||| ||| ||||||||| |||||||||| |||||||||||| |||||||
Sbjct 585 CCTAAGAAGAAAAAAAGATCAAAGAAAGGCAAGACTCCGGCTAAAGAAGATGCTCTAGTT 644
Query 820 GCTTCTAGCTCAAGGAACGCTGAGGAA 846
|||||||||||||||||||||| ||||
Sbjct 645 GCTTCTAGCTCAAGGAACGCTGGGGAA 671
> Ahg337696 jgi|Araly1|337696|fgenesh1_pg.C_scaffold_1004261
Length=987
Score = 496 bits (268), Expect = 2e-139
Identities = 465/556 (84%), Gaps = 29/556 (5%)
Strand=Plus/Plus
Query 305 GTGAAGCAGTTGAGaaaaaaaCGAGGAAGAGAAAATCGAAA-AGTGCCAACAATAGTAGA 363
|||||| ||||||||| |||||||||||||||||| | ||| ||| | ||| |||||
Sbjct 374 GTGAAGTAGTTGAGAAGAAAACGAGGAAGAGAAAA-CCAAAGAGTTCTGGCAAAAGTAGT 432
Query 364 AAGAAACTCTCCATAGAGACGCCAACGGAAGCAAAAGGCCTTGAAAGTGGTGAGGGAACT 423
||||||| |||| ||||||| ||||| ||||| |||| ||||||| |||||||||| |
Sbjct 433 AAGAAACCCTCCGTAGAGACACCAACAGAAGCTAAAGATGTTGAAAGCGGTGAGGGAAAT 492
Query 424 GTCACTAGGTTGGAAGAGAATCAGAATATTTGTGATGTAGATCAAGAGGAACCT-GTCGA 482
||||||| ||| |||||||||| | || | | | ||||||| | || || ||
Sbjct 493 GTCACTATAATGGGAGAGAATCAG--CA--TG-CA--T--ACCAAGAGG-AGCTAGTAGA 542
Query 483 TGGTCATACC-ATAGATGTTGAGGCCAAGATTGATCTT-TCAGGGACAATCGAACAAGAC 540
||||||| || || |||||||||||||| |||||||| | |||||||| ||||||||
Sbjct 543 TGGTCATGCCAAT-GATGTTGAGGCCAATCTTGATCTTAT-GGGGACAATGGAACAAGA- 599
Query 541 GACGTTCAAAAGGAGGTAGCAAATGCTGATTTAAACATGATTGACCAAGACAAGGATCTT 600
| |||||||||| |||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 600 -TC-TTCAAAAGGATGTAGCAAATGCTGATTTAGTCATGATTGACGAAGACAAGGATCTT 657
Query 601 GA-AAATGATAATCTTCTAGCTGAATTAAACCAAACTAGTGATGATGCTGAGAAAGAAGG 659
|| ||| ||||||||| || |||||||| |||||||| ||||||||||||||| |||||
Sbjct 658 GAGAAA-GATAATCTTTTAACTGAATTATACCAAACTTCTGATGATGCTGAGAACGAAGG 716
Query 660 GATCATAGGTCTTGTTAATGCTACTTCTGAAGCTATTG-AAA--ACGAAACTGAGATGAG 716
|||||| || |||||||||||||| | |||| |||| ||| ||||||||| |||| |
Sbjct 717 TCTCATAGATCCTGTTAATGCTACTTGTCAAGCAATTGAAAACTACGAAACTGGGATG-G 775
Query 717 TGT-C-AAGGAAAAAGATGGTGATGAGGAGGCTAAATCTGAGAAGCCTAAAAAGAAAAAT 774
|| | |||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 776 -GTACAAAGGAAGAAGATGGTGATGAGGAGGCTAAATCTGAGAAGCCTAAGAAGAAAAAA 834
Query 775 AGAGCAAAGAAAGTCAAGACTCCGACTAAAGAAGATGGTCTAGTTGCTTCTAGCTCAAGG 834
||||||| ||||| ||||| || | |||||||||||||||||||||||||||||||||||
Sbjct 835 AGAGCAAGGAAAGACAAGAATCTGGCTAAAGAAGATGGTCTAGTTGCTTCTAGCTCAAGG 894
Query 835 AACGCTGAGGAAGATG 850
||||| ||||| ||||
Sbjct 895 AACGCAGAGGAGGATG 910
> Ahg913200 jgi|Araly1|913200|Al_scaffold_0001_3454
Length=180
Score = 165 bits (89), Expect = 5e-40
Identities = 116/129 (90%), Gaps = 2/129 (2%)
Strand=Plus/Plus
Query 695 TTGA-AAACGAAACTGAGATGAGTGTCAAGGAAAAAGATGGTGATGAGGAGGCTAAATCT 753
|||| ||| |||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 26 TTGAGAAA-GAAACTGAGATGGGAACCAAGGAAAAAGATGGTGATGAGGAGGCTAAATCT 84
Query 754 GAGAAGCCTAAAAAGAAAAATAGAGCAAAGAAAGTCAAGACTCCGACTAAAGAAGATGGT 813
||||||||||| |||||||| ||| ||||||||| |||||||||| |||||| ||||| |
Sbjct 85 GAGAAGCCTAAGAAGAAAAAAAGATCAAAGAAAGGCAAGACTCCGGCTAAAGTAGATGCT 144
Query 814 CTAGTTGCT 822
|||||||||
Sbjct 145 CTAGTTGCT 153
> Ahg892980 jgi|Araly1|892980|Al_scaffold_0006_976
Length=579
Score = 165 bits (89), Expect = 5e-40
Identities = 116/129 (90%), Gaps = 2/129 (2%)
Strand=Plus/Plus
Query 695 TTGA-AAACGAAACTGAGATGAGTGTCAAGGAAAAAGATGGTGATGAGGAGGCTAAATCT 753
|||| ||| |||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 425 TTGAGAAA-GAAACTGAGATGGGAACCAAGGAAAAAGATGGTGATGAGGAGGCTAAATCT 483
Query 754 GAGAAGCCTAAAAAGAAAAATAGAGCAAAGAAAGTCAAGACTCCGACTAAAGAAGATGGT 813
||||||||||| |||||||| ||| ||||||||| ||| ||||||||||||| ||||| |
Sbjct 484 GAGAAGCCTAAGAAGAAAAAAAGATCAAAGAAAGGCAACACTCCGACTAAAGTAGATGCT 543
Query 814 CTAGTTGCT 822
|||||||||
Sbjct 544 CTAGTTGCT 552
> Ahg346389 jgi|Araly1|346389|fgenesh1_pg.C_scaffold_4002731
Length=321
Score = 159 bits (86), Expect = 3e-38
Identities = 116/130 (89%), Gaps = 4/130 (3%)
Strand=Plus/Plus
Query 695 TTGA-AAACGAAACTGAGATGAGTGTCAAGGAAAAAGATGGTGATGAGGAGGCTAAATCT 753
|||| ||| |||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 167 TTGAGAAA-GAAACTGAGATGGGAACCAAGGAAAAAGATGGTGATGAGGAGGCTAAATCT 225
Query 754 GAGAAGCCTAAAAAGAAAAATAGAGCAAAGAAAGTCAAG-ACTCCGACTAAAGAAGATGG 812
||||||||||| |||||||| ||| ||||||||| || | ||||||||||||| |||||
Sbjct 226 GAGAAGCCTAAGAAGAAAAAAAGATCAAAGAAAGGCA-GCACTCCGACTAAAGTAGATGC 284
Query 813 TCTAGTTGCT 822
||||||||||
Sbjct 285 TCTAGTTGCT 294
> Ahg950324 jgi|Araly1|950324|scaffold_802211.1
Length=318
Score = 152 bits (82), Expect = 4e-36
Identities = 115/130 (88%), Gaps = 5/130 (4%)
Strand=Plus/Plus
Query 696 TGA-AAACGAAACTGAGATGAGTGTCAAGGAAAAAGATGGTGATGAGGAGGCTAAATCTG 754
||| ||| |||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 190 TGAGAAA-GAAACTGAGATGGGAACCAAGGAAAAAGATGGTGATGAGGAGGCTAAATCTG 248
Query 755 AGAAGCCTAAAAAGAA-AAATAGAGCAAAGAAAGTCAAGACTCC-GACTAAAGAAGATGG 812
|||||||||| ||||| ||| ||| ||||||||| ||||||||| | |||||| |||||
Sbjct 249 AGAAGCCTAAGAAGAAGAAAAAGATCAAAGAAAGGCAAGACTCCAG-CTAAAGTAGATGC 307
Query 813 TCTAGTTGCT 822
||||||||||
Sbjct 308 TCTAGTTGCT 317
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35416189893
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5