BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G00585.1

Length=624
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg490509 jgi|Araly1|490509|fgenesh2_kg.6__3643__AT4G00585.1         876    0.0  


> Ahg490509 jgi|Araly1|490509|fgenesh2_kg.6__3643__AT4G00585.1
Length=569

 Score =  876 bits (474),  Expect = 0.0
 Identities = 542/574 (94%), Gaps = 8/574 (1%)
 Strand=Plus/Plus

Query  1    ACAAACAAATGCCATAACTCGTTTCGCTCACCCTCTTAACTCTTTAGAACAAGTAGAAGA  60
            ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  1    ACAAAGAAATGCCATAACTCGTTTCGCTCACCCTCTTAACTCTTAAGAACAAGTAGAAGA  60

Query  61   AGTCTCATCTTCTTCGTCTTCTTTGCGATCCTTCTGATTTCACTAAGGAAAAGGAATCAG  120
            ||||||||||||||| | |||| ||||||||||||||||||||||||| |||||||||||
Sbjct  61   AGTCTCATCTTCTTC-T-TTCTCTGCGATCCTTCTGATTTCACTAAGGGAAAGGAATCAG  118

Query  121  TTTTTGGTGGAAGTAATTGATCCGATCTAGGAAAAATGGGAGGAGGTGATCATGGACATG  180
            | |||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct  119  TGTTTGGTGGAACTAATCGATCCGATCTAGGAAAAATGGGAGGAGGTGAGCATGGACATG  178

Query  181  GAGCAGAAGGAGGCGATTTCAGAGCCAAAGTCTGGAGTATGACTGGTGGGCCTAACTGTA  240
            ||| |||||| |||||||||||||||||||| ||||||||| ||||||||||| ||||||
Sbjct  179  GAGGAGAAGGTGGCGATTTCAGAGCCAAAGTTTGGAGTATGTCTGGTGGGCCTTACTGTA  238

Query  241  GGCCCAAACATTGGCGTCGGAACACCGCCATTGCTATGTTCGGCGTTTTCCTTGTGTGCA  300
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  239  GGCCCAAACATTGGCGTCGGAACACCGCCATTGCTATGTTCGGCGTTTTCCTTGTGTGTA  298

Query  301  TCCCCATCGCCAAGCTATCTGCTAAGCTTGAGCAAAGGCCACACATGCCAGTACGCCCAA  360
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  299  TCCCCATCGCCAAGCTATCTGCTAAGCTCGAGCAAAGGCCACACATGCCAGTACGCCCAA  358

Query  361  TTCCTTCACAGATCTGGTGCAAGAACTTTGGAACCAAGGACGATTACGAAAAAGAGCATT  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  359  TTCCTTCACAGATCTGGTGCAAGAACTTTGGAACCAAGGACGATTACGAAAAAGAGCATT  418

Query  421  AAAAGtttttttCTTGGTTTGGAGAGAACCCTTTAATTGGTCTTCTTATTTGCAGACAAT  480
            ||| ||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct  419  AAA-GTTTTTTGCTTGGTTTGGAGAGAACCCTTTAACTGGTCT-CTTATTTGCAGACAAT  476

Query  481  GTGAGCATaaaaaaaG---CGCTTCTAGCTTTGTCTATGGATTTCAGAGTACTGTGAACA  537
            |||||||||||||||    | ||||||||| ||||| || |||||| |||||||||||||
Sbjct  477  GTGAGCATAAAAAAAAAAACCCTTCTAGCTCTGTCTTTGAATTTCATAGTACTGTGAACA  536

Query  538  TAATAATATGTCTTTTTCCTTGCCATGTAGAACA  571
            |||||||||||||||  |||||||||||||||||
Sbjct  537  TAATAATATGTCTTTG-CCTTGCCATGTAGAACA  569



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22835627283


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5