BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00590.1
Length=1413
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490508 jgi|Araly1|490508|fgenesh2_kg.6__3642__AT4G00590.1 1895 0.0
> Ahg490508 jgi|Araly1|490508|fgenesh2_kg.6__3642__AT4G00590.1
Length=1273
Score = 1895 bits (1026), Expect = 0.0
Identities = 1201/1285 (93%), Gaps = 14/1285 (1%)
Strand=Plus/Plus
Query 27 GATGGCTGGCGACGGAGCAGATCAAAGTCGACGCTTTTTCGTGGCGGTTCACGTCGGGGC 86
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 1 GATGGCTTGCGACGGAGCAGATAAAAGTCGACGCTTTTTCGTGGCGGTTCACGTCGGTGC 60
Query 87 CGGATATCATGCGGCGGCTAACGAGAAAGCTCTTAGATCTGTCATGAGACGCGCTTGCCT 146
||| |||||||| || ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 CGGGTATCATGCAGCAGCTAACGAGAAAGCTCTTAGATCCGTCATGAGACGCGCTTGCCT 120
Query 147 AGCTGCGTCGACCATTCTTCGTC-AGGATTCTGGTGAATGCATAGATGCTGTTTCAGCTG 205
||| ||||||| ||||||||| | ||||||||||||| |||||||||||||||||||| |
Sbjct 121 AGCAGCGTCGATCATTCTTCG-CAAGGATTCTGGTGAGTGCATAGATGCTGTTTCAGCCG 179
Query 206 CCATTCAAGTCCTCGAGGATGACCCGAGCACAAATGCTGGTAGAGGCTCTAATCTGACAG 265
|||| |||||| | ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CCATCCAAGTCTTGGAGGACGACCCGAGCACAAATGCTGGTAGAGGCTCTAATCTGACAG 239
Query 266 AAGATGGTCATGTGGAATGTGATGCTAGTCTTATGGATGGAGATTCAGGGATGTTTGGTG 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AAGATGGTCATGTGGAATGTGATGCTAGTCTTATGGATGGAGATTCAGGGATGTTTGGTG 299
Query 326 GTGTTGGAGCAGTTCCAGGTGTCAGAAATGCTATCAAAATTGCTGCTTTGTTGGTGAAAG 385
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 300 GTGTTGGAGCAGTTCCAGGTGTCAGAAATGCTATCAAAATTGCTGCTTTATTGGTGAAAG 359
Query 386 AGCAGATTACTGGCTCAACTCTCTTAGGCCGTATACCTCCTATGTTGTTGGTTGGTGAGG 445
||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 360 AGCAGATTAGTGGCTCAACTCTGTTAGGCCGTATACCTCCTATGTTGTTGGTTGGTGAAG 419
Query 446 GAGCTCGACGTTGGGGTAAATCCAAAAGTGTTCTTATACCTGGAACTGTCACAGAAGCTG 505
|||||||||| ||||||||||||||| |||||||| | |||| |||||||||||||||||
Sbjct 420 GAGCTCGACGATGGGGTAAATCCAAAGGTGTTCTTTTGCCTGAAACTGTCACAGAAGCTG 479
Query 506 ATCAGTGGCTGGTTACAGAGAGAGCAAGAAATCAGTGGAGAAGGTTCAAGGCCATGCTTT 565
||||||||||| |||||||||||||||||| |||||||||| |||||| |||||||||
Sbjct 480 ATCAGTGGCTGACTACAGAGAGAGCAAGAAACCAGTGGAGAAAATTCAAGACCATGCTTT 539
Query 566 CTGAGGTAGGGGCAAAGAGTATTCTCTCTGCTGAAGAACATCCCAGAGGAACCGAGAATA 625
||||||||| ||| ||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 540 CTGAGGTAGAGGCGAAGAGTAACCTTTCTGCTGAAGAACATCCCAGAGGAACCGAGAATA 599
Query 626 ATGAAACATGTGAGGAAAA-CGTATCATCCTGTGCAGCTGCAGATGAGGATAAGATCATG 684
|||| |||||||||||||| | |||| |||||| ||| | |||||||||||||||||||
Sbjct 600 ATGACACATGTGAGGAAAAACC-ATCACCCTGTGTAGCAGTAGATGAGGATAAGATCATG 658
Query 685 GACACTGTTGGCGTAATCTGTGTTGACAATGAAGGACACATTGCGTGTGGGTCCTCAAGT 744
||||||||||||||||| |||||||||| | ||||||||| || ||||||||||||||||
Sbjct 659 GACACTGTTGGCGTAATTTGTGTTGACAGTCAAGGACACACTGTGTGTGGGTCCTCAAGT 718
Query 745 GGCGGTATTGCAATGAAGATTAGCGGCCGTGTAGGTTTGGCGGCAACATATGGTTCTGGT 804
|||||||||||||||||||||||||||||||| ||||| || ||||| ||||||||||||
Sbjct 719 GGCGGTATTGCAATGAAGATTAGCGGCCGTGTGGGTTTAGCCGCAACGTATGGTTCTGGT 778
Query 805 TGCTGGGCATCCTCTAAAGGACCATTTGGAGCTCCATTTCTAGTTGGATGTTGTGTGTCT 864
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 779 TGCTGGGCATCCTCTAAAGGACCATTTGGAGCTCCATTTCGAGTTGGCTGTTGTGTGTCT 838
Query 865 GGAGCGGGAGAGTATCTTATGAGAGGTTTTGCAGCTAGAGAGTGTTGTACTTCATTGGCA 924
||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||| ||
Sbjct 839 GGAGCTGGAGAGTATCTTATGAGAGGATTTGCAGCGAGAGAGTGTTGTACTTCATTGTCA 898
Query 925 CTCTCTCAGGCTGGTCCAGCATCTGCTGCCATGAAGGTTTTACGTTCTGTAATGCATCAA 984
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 CTCTCACAGGCTGGTCCAGCATCTGCTGCCATGAAGGTTTTACGTTCTGTAATGCATCAA 958
Query 985 GAGAGTTCAAAAATTGGAACAGCTGATAAAACTGCAGGAATTCTAGTAGTTCAGGCGGAT 1044
|||||||| |||| |||||| ||||| ||||||||||||||||||||||||||||| |||
Sbjct 959 GAGAGTTCGAAAAGTGGAACCGCTGACAAAACTGCAGGAATTCTAGTAGTTCAGGCAGAT 1018
Query 1045 GCTTCTGTGGTTGTCCCTGGAAGTAAGCCGGAGCTGAATGCTGTTGAGATAGCTGCTGCT 1104
|||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 1019 GCTTCTGTGGCTGTCCCTGGAGGTAAGCCGGAGCTGAATGCTGTTGAGATAGCCGCTGCT 1078
Query 1105 TACTCGTCACTTTCTTTCGGCGTGGGATACTATGGGAACTCTATAGAGAAGCCAAAGATT 1164
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 TACTCGTCACTGTCTTTTGGCGTGGGATACTATGGGAACTCTATAGAGAAGCCAAAGATT 1138
Query 1165 TCGATTCTCAGGACGAGGAGACAGATGAGTGAGGCTGGGGTAGACCATTTTGAAGCCCGG 1224
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 TCGATTCTTAGGACGAGGAGACAGATGAGTGAGGCTGGGGTAGACCATTTTGAAGCCCGG 1198
Query 1225 ATTGATCTCCGCCCAACCTGTTGCTGATTAATTTCTGAAGTTTTGGTATTTTGTGGAGAA 1284
|||||||||||||||||||||||||||||||||| || | ||||||||| |||
Sbjct 1199 ATTGATCTCCGCCCAACCTGTTGCTGATTAATTT--GA--T------ATTTTGTGGCGAA 1248
Query 1285 AAGTTTCAGAATCTGTAACATAGGA 1309
||||||||||||||||||||| |||
Sbjct 1249 AAGTTTCAGAATCTGTAACATGGGA 1273
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52831169815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5