BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00600.1
Length=933
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490507 jgi|Araly1|490507|fgenesh2_kg.6__3641__AT4G00600.1 1297 0.0
Ahg490506 jgi|Araly1|490506|fgenesh2_kg.6__3640__AT4G00620.1 981 0.0
Ahg943692 jgi|Araly1|943692|scaffold_604236.1 665 0.0
> Ahg490507 jgi|Araly1|490507|fgenesh2_kg.6__3641__AT4G00600.1
Length=933
Score = 1297 bits (702), Expect = 0.0
Identities = 860/937 (92%), Gaps = 8/937 (1%)
Strand=Plus/Plus
Query 1 ATGTTTACTGATTGCTCCTCCTCCACAACGTCGCGTCTCATCCATTT-ATACAACCGCAA 59
|||||||| ||||||||||||||||| |||||||||||||||||||| | ||| || |||
Sbjct 1 ATGTTTACCGATTGCTCCTCCTCCACGACGTCGCGTCTCATCCATTTGA-ACAGCCTCAA 59
Query 60 TGGTGTTTTCCTCCCCCGCCCGAGCGTCAGCCAATTCAGCTTACGGACAACTGCGTCTAC 119
||||| |||||| ||||||||| || || ||||| |||||||||||||||||||||||||
Sbjct 60 TGGTGCTTTCCTTCCCCGCCCGTGCTTCGGCCAACTCAGCTTACGGACAACTGCGTCTAC 119
Query 120 TTGGCGCTGCACTCTCTCCATTCGCTCCTCTTCTTCTCCATCTGCGATTGTAATTGATGG 179
||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 120 CTGGCGCTGCACTCTCTCCATTCGCTCCTCTTCTTCTCCATCCGCGATTGTAATTAATGG 179
Query 180 AAAGGCTGAGGCCAAAAAGATTAGAGATGATATCAAAATCGAAGTTTCAAGAATGAAGGA 239
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AAAGGCTGAGGCCAAAAATATTAGAGATGATATCAAAATCGAAGTTTCAAGAATGAAGGA 239
Query 240 ATCAATCGGTGTGGTTCCTGCTGAAGATTCATCAGAAGAAGAGGTGTTGAAATATGTATC 299
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 240 ATCAATCGGTGTGGTTCCTGCTGAAGATTCATCTGAAGAAGAGGTGTTGAAATCTGTATC 299
Query 300 AGGATTCAATGATGATCCTTCTGTTCACGGAGTCCTTGTTCAGTTGCCTCTACCATCGCA 359
||| ||||| || ||||||||||| || ||| ||||||||||||||||||| ||||||||
Sbjct 300 AGGCTTCAACGACGATCCTTCTGTCCATGGAATCCTTGTTCAGTTGCCTCTGCCATCGCA 359
Query 360 TATGGATGAACAGAACATATTGAATGCGGTTAGTATAGAGAAGGACGTTGATGGATTTCA 419
|||||||||||||| ||||||||||||||||||||||||||| || ||||| || |||||
Sbjct 360 TATGGATGAACAGAGCATATTGAATGCGGTTAGTATAGAGAAAGATGTTGACGGGTTTCA 419
Query 420 CCCGCTAAATATTGGACGGC-TTGCCATGCGTGGTAGAGAACCTTTATTCGTTCCATGTA 478
|||||||||||||||| ||| ||||||||||||| |||||||| |||||| |||| ||||
Sbjct 420 CCCGCTAAATATTGGA-GGCCTTGCCATGCGTGGAAGAGAACCCTTATTCCTTCCGTGTA 478
Query 479 CTCCAAAAGGATGCATCGAGTTGTTGCACAGATACAACATTGA-ATTCAAAGGCAAAAGA 537
|||||||||||||||||||||||||||| |||||||| ||||| || || ||| ||||||
Sbjct 479 CTCCAAAAGGATGCATCGAGTTGTTGCATAGATACAAAATTGATAT-CATAGGAAAAAGA 537
Query 538 GCAGTTGTTATTGGAAGGAGTAACATTGTTGGTATGCCAGCTGCTCTGTTGCTGCAGAAG 597
|| |||||| | ||||||||||| |||||||||||||||||||||||||| ||||||| |
Sbjct 538 GCGGTTGTTCTCGGAAGGAGTAATATTGTTGGTATGCCAGCTGCTCTGTTACTGCAGAGG 597
Query 598 GAGGATGCAACCGTTAGCATTATCCATTCAAGAACCATGAACCCTGAAGAACTCACAAGA 657
|||||||| || |||| |||||||||||||||||| || |||||||||||| ||||||||
Sbjct 598 GAGGATGCGACTGTTACCATTATCCATTCAAGAACAATAAACCCTGAAGAAATCACAAGA 657
Query 658 CAAGCTGATATCCTAATCTCAGCTGTTGGGA-AACCAAACATGGTCAGAGGAAGCTGGAT 716
||||||||||| ||||| |||||||||| | ||||||||||||||||||||||||||||
Sbjct 658 CAAGCTGATATTATAATCGCAGCTGTTGG-ACAACCAAACATGGTCAGAGGAAGCTGGAT 716
Query 717 AAAACCGGGTGCAGTCCTCATCGATGTTGGGATTAAACCTGTTGAGGATCCAAGTGCTGC 776
|||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 717 AAAACCTGGTGCAGTTGTCATCGATGTTGGGATTAAACGTGTTGAGGATCCAAGTGCTGC 776
Query 777 CGGTGGAGAGCGGTTGGTTGGAGACATTTGCTATGTGGAGGCTAGCAAAATTGCATCAGC 836
| ||| | || | |||||||||||||||||| | ||||||||||||| ||||||||||
Sbjct 777 CCATGGCTATCGATGGGTTGGAGACATTTGCTACGAGGAGGCTAGCAAAGTTGCATCAGC 836
Query 837 CATCACACCTGTTCCTGGTGATGTAGGACCAATGACCATAGCCATGCTTCTATCCAACAC 896
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 837 CATCACACCTGTTCCTGGTGGTGTTGGACCAATGACCATAGCCATGCTTCTATCCAACAC 896
Query 897 TTTAACATCAGCCAAGAGAATTCACAACTTCCAGTGA 933
||| ||||||||||||||| |||||||||||||||||
Sbjct 897 TTTTACATCAGCCAAGAGATTTCACAACTTCCAGTGA 933
> Ahg490506 jgi|Araly1|490506|fgenesh2_kg.6__3640__AT4G00620.1
Length=1506
Score = 981 bits (531), Expect = 0.0
Identities = 628/676 (93%), Gaps = 2/676 (0%)
Strand=Plus/Plus
Query 259 GCTGAAGATTCATCAGAAGAAGAGGTGTTGAAATATGTATCAGGATTCAATGATGATCCT 318
|||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||
Sbjct 630 GCTGAAGATTCATCAGAAGAAGAGGTGTTGAAATCTGTCTCAGGCTTCAATGATGATCCT 689
Query 319 TCTGTTCACGGAGTCCTTGTTCAGTTGCCTCTACCATCGCATATGGATGAACAGAACATA 378
||||| || ||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 690 TCTGTCCATGGAATCCTTGTTCAGTTGCCTCTACCATCGCACATGGATGAACAGAACATA 749
Query 379 TTGAATGCGGTTAGTATAGAGAAGGACGTTGATGGATTTCACCCGCTAAATATTGGACGG 438
|| |||||||||||||||||||| || |||||||| ||||||||||||||||||||||||
Sbjct 750 TTAAATGCGGTTAGTATAGAGAAAGATGTTGATGGGTTTCACCCGCTAAATATTGGACGG 809
Query 439 CTTGCCATGCGTGGTAGAGAACCTTTATTCGTTCCATGTACTCCAAAAGGATGCATCGAG 498
|||||||||||||| |||||||| || |||||||| ||||||||||||||||||||||||
Sbjct 810 CTTGCCATGCGTGGAAGAGAACCCTTGTTCGTTCCGTGTACTCCAAAAGGATGCATCGAG 869
Query 499 TTGTTGCACAGATACAACATTGAATTCAAAGGCAAAAGAGCAGTTGTTATTGGAAGGAGT 558
|||||||| ||||| ||||||||| ||||||| |||||||| || |||||||||||||||
Sbjct 870 TTGTTGCATAGATATAACATTGAAATCAAAGGAAAAAGAGCGGTAGTTATTGGAAGGAGT 929
Query 559 AACATTGTTGGTATGCCAGCTGCTCTGTTGCTGCAGAAGGAGGATGCAACCGTTAGCATT 618
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 930 AACATTGTTGGTATGCCAGCTGCTCTGTTACTGCAGAGGGAGGATGCAACCGTTAGCATT 989
Query 619 ATCCATTCAAGAACCATGAACCCTGAAGAACTCACAAGACAAGCTGATATCCTAATCTCA 678
|||||||||||||||| |||||| |||||| |||||||| |||||||||| ||||| ||
Sbjct 990 ATCCATTCAAGAACCAAGAACCCCGAAGAAATCACAAGAGAAGCTGATATTATAATCGCA 1049
Query 679 GCTGTTGGGA-AACCAAACATGGTCAGAGGAAGCTGGATAAAACCGGGTGCAGTCCTCAT 737
|||||||| | ||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 1050 GCTGTTGG-ACAACCAAACATGGTCAGAGGAAGCTGGATAAAACCGGGCGCAGTCATCAT 1108
Query 738 CGATGTTGGGATTAAACCTGTTGAGGATCCAAGTGCTGCCGGTGGAGAGCGGTTGGTTGG 797
|||||||||||||| |||||||||||||||||||||||| ||||| | || ||||||||
Sbjct 1109 TGATGTTGGGATTAATCCTGTTGAGGATCCAAGTGCTGCCCGTGGATATCGATTGGTTGG 1168
Query 798 AGACATTTGCTATGTGGAGGCTAGCAAAATTGCATCAGCCATCACACCTGTTCCTGGTGA 857
|||||||||||||| ||||||| ||||| |||||||||||||||| |||||||||||||
Sbjct 1169 AGACATTTGCTATGAGGAGGCTTGCAAAGTTGCATCAGCCATCACGCCTGTTCCTGGTGG 1228
Query 858 TGTAGGACCAATGACCATAGCCATGCTTCTATCCAACACTTTAACATCAGCCAAGAGAAT 917
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct 1229 TGTAGGACCAATGACCATAGCCATGCTCCTATCCAACACTTTAACATCAGCTAAGAGGAT 1288
Query 918 TCACAACTTCCAGTGA 933
||||||||||||||||
Sbjct 1289 TCACAACTTCCAGTGA 1304
> Ahg943692 jgi|Araly1|943692|scaffold_604236.1
Length=910
Score = 665 bits (360), Expect = 0.0
Identities = 581/685 (85%), Gaps = 26/685 (4%)
Strand=Plus/Plus
Query 259 GCTGAAGATTCATCAGAAGAAGAGGTGTTGAAATATGTATCAGGA-TTCAATGATGATCC 317
|||||||||||||||||||| ||||||||||||||||| ||| | ||||| ||||||||
Sbjct 210 GCTGAAGATTCATCAGAAGAGGAGGTGTTGAAATATGTCTCA-AACTTCAACGATGATCC 268
Query 318 TTCTGTTCACGGAGTCCTTGTTCAGTTGCCTCTACCATCGCATATGGATGA-ACAGAACA 376
|| ||| || ||| |||||||||||| |||||||||||| ||||||||||| | ||||||
Sbjct 269 TTGTGTCCATGGAATCCTTGTTCAGTCGCCTCTACCATCTCATATGGATGAGA-AGAACA 327
Query 377 TATTGAATGCGGTTAGTATAGAGAAGGACGTTGATGGATTTCACCCGCT--A-A--ATAT 431
||||||||||||||||| | ||||| |||||||||||||||||||| || | | ||||
Sbjct 328 TATTGAATGCGGTTAGTGTTGAGAAAGACGTTGATGGATTTCACCCACTCAATATTATAT 387
Query 432 TGGACGGCTTGCCATGCGTGGTAGAGAACCTTTATTCGTTCCATGTACTCCAAAAGGATG 491
||||| ||||| ||||| || |||||||| |||| |||||| ||| ||||||||||||
Sbjct 388 TGGACTACTTGCGATGCGCGGAAGAGAACCGTTATGCGTTCCGCGTATTCCAAAAGGATG 447
Query 492 CATCGAGTTGTTGCACAGATACAACATTGA-ATTCAAAGGCAAA-AGAGCAGTTGTTATT 549
||||||| |||| ||| | |||||| |||| | ||||| | ||| |||||||||||| ||
Sbjct 448 CATCGAGCTGTTACACTGGTACAACTTTGAGA-TCAAA-GAAAAGAGAGCAGTTGTTCTT 505
Query 550 GGAAGGAGTAACA-TTGTTGGTATGCCAGCTGCTCTGTTGCTGCAGAAGGAGGATGCAAC 608
||||||||||||| || ||||||||||| |||||||||| |||||| | || ||||||||
Sbjct 506 GGAAGGAGTAACACTT-TTGGTATGCCAACTGCTCTGTTACTGCAG-A-GAAGATGCAAC 562
Query 609 CGTTAGCATTATCCATTCAAGAACCATGAACCCTGAAGAACTCACAAGACAAGCTGATAT 668
|||| |||||||||||||| ||||| ||||||||||||| | |||||||||||||||||
Sbjct 563 TGTTACCATTATCCATTCAAAAACCAAGAACCCTGAAGAAATTACAAGACAAGCTGATAT 622
Query 669 CCTAATCTCAGCTGTTGGGA-AACCAAACATGGTCAGAGGAAGCTGGATAAAACCGGGTG 727
| ||||||| |||||| ||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 623 CATAATCTCGGCTGTT-GGACAACCAAACATGGTCAGAAGAAGCTGGATAAAACCGGGTG 681
Query 728 CAGTCCTCATCGATGTTGGGATTAAACCTGTTGAGGATCCAAGTGCTGCC-GGTGGAGAG 786
||||| ||||| ||||||||| || |||| ||||| |||| ||| || |||
Sbjct 682 CAGTCGTCATCAATGTTGGGACTAGTGTTGTTAAGGATTCAAGCGCT-CCATATGGCTTT 740
Query 787 CGGTTGGTTGGAGACATTTGCTATGTGGAGGCTAGCAAAATTGCATCAGCCATCACACCT 846
|| |||| ||||||||||||| || ||||| | ||||| ||||||||||||||||||||
Sbjct 741 CGAATGGTCGGAGACATTTGCTTTGAGGAGGTTTGCAAAGTTGCATCAGCCATCACACCT 800
Query 847 G-TTC--CTGGTGATGTAG-GACCAATGACCATAGCCATGCTTCTATCCAACACTTTAAC 902
| | | ||| | | | | |||| ||| |||||||||||||||||||||||||||
Sbjct 801 GATGCGTGTGGCCCT-TCGTTATTAATGGCCAAAGCCATGCTTCTATCCAACACTTTAAC 859
Query 903 ATCAGCCAAGAGAATTCACAACTTC 927
|||||||||||||||||||||||||
Sbjct 860 ATCAGCCAAGAGAATTCACAACTTC 884
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34615608636
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5