BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00620.1
Length=1551
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490506 jgi|Araly1|490506|fgenesh2_kg.6__3640__AT4G00620.1 2134 0.0
Ahg490507 jgi|Araly1|490507|fgenesh2_kg.6__3641__AT4G00600.1 992 0.0
Ahg943692 jgi|Araly1|943692|scaffold_604236.1 750 0.0
> Ahg490506 jgi|Araly1|490506|fgenesh2_kg.6__3640__AT4G00620.1
Length=1506
Score = 2134 bits (1155), Expect = 0.0
Identities = 1431/1554 (92%), Gaps = 59/1554 (4%)
Strand=Plus/Plus
Query 9 TGAACTTAAACCCTTGTTGAT-ATCAAAAGAAGAAACCCTA---GTCTCTCCGACTCT-- 62
||||||||||||||||||| | || |||||||||||||||| ||||||||||||||
Sbjct 1 TGAACTTAAACCCTTGTTG-TAATTAAAAGAAGAAACCCTAGTCGTCTCTCCGACTCTCC 59
Query 63 -CCGTAGACGACGAAGTTATCTTCTTCAATTCATCGTCTCTTCTCTGCTCTGCTTTGCTC 121
|||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 60 ACCGTAGACGACGAAGTCATCTTCTTCAATTCATCGTCTCTTCTCTGCTCTG----G--- 112
Query 122 TAGATCACAAATTAAAAGACTTCATTAGTCTTCCTGTCTCCACCATTACCTTCTTCCTTT 181
| || |||||||||||||| | | ||||||||||||||||| ||||||||||||||| |
Sbjct 113 -A-AT-ACAAATTAAAAGACCT-AATAGTCTTCCTGTCTCCATCATTACCTTCTTCCTCT 168
Query 182 TTAACTCAGCCACGACGAGCAGACTATTGTTCTGTTTTCCTTGTATAAAAATGGCGTCGA 241
||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 169 TTAACTCAGCCACAACGAGCAGACTACTGTTCTGTTTTCCTTGTATAAAAATGGCGTCGT 228
Query 242 TGATGTTTACCGATTGCTCCTCCACCACGACGTCGCGTCTCATCCATTTGAACCGAAGCA 301
||||||||||||||||||| ||| |||||||||| |||||||||||||||||||| |||
Sbjct 229 TGATGTTTACCGATTGCTCGTCCTCCACGACGTCCCGTCTCATCCATTTGAACCGTCGCA 288
Query 302 GCGGTACTTTCCTCCTCCGTCAATGCGTCGGCCAACTCCGTTTACAGACCACTGCTTCTG 361
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 289 CCGGTACTTTCCTCCTCCGTCAATGCGTCGTCCAACTCCGTTTACAGACCACTGCTTCTG 348
Query 362 GCCGTGGCTGCTGCATTCGCTCCTCTTCTTCTCCCATTTCTTCCATTTCCGCTGATACAA 421
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 349 GCCGTGGCTGCTGCATTCGCTCCTCTTCTTCTCCCATTTCTGCCATTTCCGCTGATACAA 408
Query 422 AATCA---GAGGGTGGCGCAATTGTAATAGATGGAAAGGCTGTGGCAAAAAAGATTAGAG 478
||||| ||||||| |||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 409 AATCATCAGAGGGTGTCGCAATTGTAATTGATGGAAAGGCTGTGGCTAAAAAGATTAGAG 468
Query 479 ATGAAATCACAATTGAAGTTTCAAGAATGAAGGAATCAATTGGTGTGATTCCTGGTTTAG 538
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 469 ATGAAATCACAATCGAAGTTTCAAGAATGAAGGAATCTATTGGTGTGATTCCTGGTTTAG 528
Query 539 CAGTAATCCTTGTTGGTGACAGAAAAGATTCTGCAACTTATGTGAGGAACAAGAAGAAAG 598
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 529 CAGTAATCCTTGTTGGAGACAGAAAGGATTCTGCAACTTATGTGAGGAACAAGAAGAAAG 588
Query 599 CTTGTGACTCCGTTGGAATCAAATCGTTCGAAGTTCGTCTAGCTGAAGATTCATCAGAAG 658
||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||
Sbjct 589 CTTGTGACTCCGTTGGAATTAAATCGTTCGAAATTTGTCTAGCTGAAGATTCATCAGAAG 648
Query 659 AAGAGGTGTTGAAATCTGTATCAGGATTCAATGATGATCCTTCTGTCCATGGAATCCTTG 718
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 649 AAGAGGTGTTGAAATCTGTCTCAGGCTTCAATGATGATCCTTCTGTCCATGGAATCCTTG 708
Query 719 TTCAGTTGCCTCTGCCATCGCATATGGATGAACAGAACATACTGAATGCGGTTAGTATAG 778
||||||||||||| |||||||| |||||||||||||||||| | ||||||||||||||||
Sbjct 709 TTCAGTTGCCTCTACCATCGCACATGGATGAACAGAACATATTAAATGCGGTTAGTATAG 768
Query 779 AGAAAGATGTTGACGGATTTCATCCGCTAAATATTGGACGGCTTGCCATGCGTGGAAGAG 838
||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 769 AGAAAGATGTTGATGGGTTTCACCCGCTAAATATTGGACGGCTTGCCATGCGTGGAAGAG 828
Query 839 AACCCTTATTCGTTCCTTGTACTCCAAAAGGATGCATTGAGTTGTTGCATAGATACAACA 898
||||||| |||||||| |||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 829 AACCCTTGTTCGTTCCGTGTACTCCAAAAGGATGCATCGAGTTGTTGCATAGATATAACA 888
Query 899 TTGAAATCAAAGGAAAGAGAGCGGTTGTTATCGGAAGGAGTAACATTGTCGGTATGCCAG 958
|||||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||
Sbjct 889 TTGAAATCAAAGGAAAAAGAGCGGTAGTTATTGGAAGGAGTAACATTGTTGGTATGCCAG 948
Query 959 CTGCTCTTTTACTGCAGAGGGAGGATGCAACCGTTAGCATTATCCATTCAAGAACCAAGA 1018
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 CTGCTCTGTTACTGCAGAGGGAGGATGCAACCGTTAGCATTATCCATTCAAGAACCAAGA 1008
Query 1019 ACCCTGAAGAAATCACAAGAGAAGCTGATATTATAATCTCAGCTGTTGGACAGCCAAACA 1078
|||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 1009 ACCCCGAAGAAATCACAAGAGAAGCTGATATTATAATCGCAGCTGTTGGACAACCAAACA 1068
Query 1079 TGGTCAGAGGAAGCTGGATAAAACCGGGCGCAGTCCTCATCGATGTTGGGATTAATCCTG 1138
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1069 TGGTCAGAGGAAGCTGGATAAAACCGGGCGCAGTCATCATTGATGTTGGGATTAATCCTG 1128
Query 1139 TTGAGGATCCAAGTGCTGCGCGTGGATATCGATTGGTTGGAGACATTTGCTACGAGGAGG 1198
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1129 TTGAGGATCCAAGTGCTGCCCGTGGATATCGATTGGTTGGAGACATTTGCTATGAGGAGG 1188
Query 1199 CTAGCAAAGTTGCATCAGCCATCACACCTGTTCCTGGCGGTGTAGGACCAATGACCATAG 1258
|| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1189 CTTGCAAAGTTGCATCAGCCATCACGCCTGTTCCTGGTGGTGTAGGACCAATGACCATAG 1248
Query 1259 CCATGCTTCTATCCAACACTTTAACATCAGCTAAGAGGATTCACAACTTCCAGTGACGTC 1318
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249 CCATGCTCCTATCCAACACTTTAACATCAGCTAAGAGGATTCACAACTTCCAGTGACGTC 1308
Query 1319 ACTTAAAAAGAAGATTGCTGGCCTTTTGGGAAACAAACAAATCGTACTCTGTTTTTTGAA 1378
|||||||| ||||||||||||||||||||||| | | | | || |||
Sbjct 1309 ACTTAAAA-GAAGATTGCTGGCCTTTTGGGAA---------T--T--T-T-TT----GAA 1348
Query 1379 GCCAATGATTTACTTTGGTCTTTAAAGAAAGTTATCGTTTTGTTCTATGAAACAAAACAT 1438
||||||| ||||||||| |||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1349 GCCAATGGTTTACTTTGCTCTTTAAAGAAA-TTATAGTTTTGTTCTATGAAACAAAACAT 1407
Query 1439 GTAGTTTTTAAGTCACATAAATTGTCTTCAACATTGTTTGTCTCTTCTTGGTATTTTGAG 1498
|||||||| || ||||||||||||||| || |||||||| ||||| ||
Sbjct 1408 GTAGTTTT-AACTCACATAAATTGTCT--------GT----CTCTTCTTACTATTT-GA- 1452
Query 1499 TC-AGAACTAGTTTTAACTTATCCCAGCTATGATATATCCCAGCCTCACCCATC 1551
|| |||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 1453 TCCAGAACTAGTTTTAACTTATCTCAGATATGATATATCCCAGCCTCACCCATC 1506
> Ahg490507 jgi|Araly1|490507|fgenesh2_kg.6__3641__AT4G00600.1
Length=933
Score = 992 bits (537), Expect = 0.0
Identities = 651/705 (92%), Gaps = 11/705 (2%)
Strand=Plus/Plus
Query 613 GGAATCAAATCGTTCGAAGTTCGTCTAGCTGAAGATTCATCAGAAGAAGAGGTGTTGAAA 672
|||||| ||||| | | |||| || |||||||||||||| ||||||||||||||||||
Sbjct 237 GGAATC-AATCGGT-GTGGTTC--CT-GCTGAAGATTCATCTGAAGAAGAGGTGTTGAAA 291
Query 673 TCTGTATCAGGATTCAATGATGATCCTTCTGTCCATGGAATCCTTGTTCAGTTGCCTCTG 732
||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 292 TCTGTATCAGGCTTCAACGACGATCCTTCTGTCCATGGAATCCTTGTTCAGTTGCCTCTG 351
Query 733 CCATCGCATATGGATGAACAGAACATACTGAATGCGGTTAGTATAGAGAAAGATGTTGAC 792
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 352 CCATCGCATATGGATGAACAGAGCATATTGAATGCGGTTAGTATAGAGAAAGATGTTGAC 411
Query 793 GGATTTCATCCGCTAAATATTGGACGG-CTTGCCATGCGTGGAAGAGAACCCTTATTCGT 851
|| ||||| ||||||||||||||| || |||||||||||||||||||||||||||||| |
Sbjct 412 GGGTTTCACCCGCTAAATATTGGA-GGCCTTGCCATGCGTGGAAGAGAACCCTTATTCCT 470
Query 852 TCCTTGTACTCCAAAAGGATGCATTGAGTTGTTGCATAGATACAACATTGAAATCAAAGG 911
||| |||||||||||||||||||| |||||||||||||||||||| ||||| |||| |||
Sbjct 471 TCCGTGTACTCCAAAAGGATGCATCGAGTTGTTGCATAGATACAAAATTGATATCATAGG 530
Query 912 AAAGAGAGCGGTTGTTATCGGAAGGAGTAACATTGTCGGTATGCCAGCTGCTCTTTTACT 971
||| |||||||||||| ||||||||||||| ||||| ||||||||||||||||| |||||
Sbjct 531 AAAAAGAGCGGTTGTTCTCGGAAGGAGTAATATTGTTGGTATGCCAGCTGCTCTGTTACT 590
Query 972 GCAGAGGGAGGATGCAACCGTTAGCATTATCCATTCAAGAACCAA-GAACCCTGAAGAAA 1030
||||||||||||||| || |||| ||||||||||||||||| ||| |||||||||||||
Sbjct 591 GCAGAGGGAGGATGCGACTGTTACCATTATCCATTCAAGAA-CAATAAACCCTGAAGAAA 649
Query 1031 TCACAAGAGAAGCTGATATTATAATCTCAGCTGTTGGACAGCCAAACATGGTCAGAGGAA 1090
|||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 650 TCACAAGACAAGCTGATATTATAATCGCAGCTGTTGGACAACCAAACATGGTCAGAGGAA 709
Query 1091 GCTGGATAAAACCGGGCGCAGTCCTCATCGATGTTGGGATTAATCCTGTTGAGGATCCAA 1150
||||||||||||| || ||||| ||||||||||||||||||| | ||||||||||||||
Sbjct 710 GCTGGATAAAACCTGGTGCAGTTGTCATCGATGTTGGGATTAAACGTGTTGAGGATCCAA 769
Query 1151 GTGCTGCGCGTGGATATCGATTGGTTGGAGACATTTGCTACGAGGAGGCTAGCAAAGTTG 1210
||||||| | ||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 770 GTGCTGCCCATGGCTATCGATGGGTTGGAGACATTTGCTACGAGGAGGCTAGCAAAGTTG 829
Query 1211 CATCAGCCATCACACCTGTTCCTGGCGGTGTAGGACCAATGACCATAGCCATGCTTCTAT 1270
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 830 CATCAGCCATCACACCTGTTCCTGGTGGTGTTGGACCAATGACCATAGCCATGCTTCTAT 889
Query 1271 CCAACACTTTAACATCAGCTAAGAGGATT-CACAACTTCCAGTGA 1314
|||||||||| |||||||| ||||| ||| |||||||||||||||
Sbjct 890 CCAACACTTTTACATCAGCCAAGAG-ATTTCACAACTTCCAGTGA 933
Score = 135 bits (73), Expect = 7e-31
Identities = 225/292 (77%), Gaps = 36/292 (12%)
Strand=Plus/Plus
Query 244 ATGTTTACCGATTGCTCCTCCACCACGACGTCGCGTCTCATCCATTTGAACCGAAGCAGC 303
||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||
Sbjct 1 ATGTTTACCGATTGCTCCTCCTCCACGACGTCGCGTCTCATCCATTTGAACAGCCTCAAT 60
Query 304 GGTACTTTCCT-CCTCCGTCAATGCGTCGGCCAACTCCGTTTACAGACCACTGCTTCTGG 362
||| ||||||| || ||| | ||| ||||||||||| | |||| ||| ||||| |||
Sbjct 61 GGTGCTTTCCTTCC-CCGCCCGTGCTTCGGCCAACTCAGCTTACGGACAACTGCGTCTA- 118
Query 363 CCGTGGCTGCTGCATTCGCTCCTCTTCTTCTCC-CAT-TTCTTCCATTTCCGCTGATACA 420
|| |||| |||||| || |||| ||| |||| | | |||| |||| |||| |||
Sbjct 119 CC-TGGC-GCTGCACTCTCTCCA-TTCG-CTCCTCTTCTTCT-CCAT--CCGC-GAT--- 167
Query 421 AAATCAGAGGGTGGCGCAATTGTAATAGATGGAAAGGCTGTGGCAAAAAAGATTAGAGAT 480
| | | |||| ||| | | |||||||| ||| ||||| |||||||||
Sbjct 168 ---T--G----T-----AATT--AAT-G--G-AAAGGCTGAGGCCAAAAATATTAGAGAT 207
Query 481 GAAATCACAATTGAAGTTTCAAGAATGAAGGAATCAATTGGTGTGATTCCTG 532
|| |||| ||| |||||||||||||||||||||||||| |||||| ||||||
Sbjct 208 GATATCAAAATCGAAGTTTCAAGAATGAAGGAATCAATCGGTGTGGTTCCTG 259
> Ahg943692 jgi|Araly1|943692|scaffold_604236.1
Length=910
Score = 750 bits (406), Expect = 0.0
Identities = 757/921 (82%), Gaps = 45/921 (5%)
Strand=Plus/Plus
Query 435 CGCAATTGTAATAGATGGAAA-GGCTGTGGCAAAAAAGATTA-GAGATGAAATCACAATT 492
||| || ||| | ||| |||| |||||||||| ||| |||| | ||||| |||| | |
Sbjct 17 CGCTATGGTATTTGAT-GAAATGGCTGTGGCAGTAAATATTATG-GATGAGATCAGAGTC 74
Query 493 GAAGTTTCAAGAATGAAGGAATCAATTGGTGTGATTCCTGGTTTAGCAGTAATCCTTGTT 552
||| |||||||||| || ||||||| ||| | ||||||||||||||||||||||| ||
Sbjct 75 GAAACTTCAAGAATGGAGAAATCAATCAGTGCGGTTCCTGGTTTAGCAGTAATCCTTTTT 134
Query 553 GGTGACAGAAAAGATTCTGC-AA-CTTATGTGAGGAACAAGAAGAAAGCTTGTGACTCCG 610
|| ||||| |||| || | || | || ||| | || | | || | | | |
Sbjct 135 GGGGACAG-TAAGA-GCTCCAAAGCCTA--TGACGTAC---CTG---G-TT-T-AGT-GG 180
Query 611 TTGGAATCAAATCGTTCGAAGTTCGTCTAGCTGAAGATTCATCAGAAGAAGAGGTGTTGA 670
||||||||||| | ||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 181 TTGGAATCAAAACATTCCTAGTTCGTCTAGCTGAAGATTCATCAGAAGAGGAGGTGTTGA 240
Query 671 AATCTGTATCAGGA-TTCAATGATGATCCTTCTGTCCATGGAATCCTTGTTCAGTTGCCT 729
||| ||| ||| | ||||| |||||||||| ||||||||||||||||||||||| ||||
Sbjct 241 AATATGTCTCAA-ACTTCAACGATGATCCTTGTGTCCATGGAATCCTTGTTCAGTCGCCT 299
Query 730 CTGCCATCGCATATGGATGA-ACAGAACATACTGAATGCGGTTAGTATAGAGAAAGATGT 788
|| ||||| ||||||||||| | |||||||| |||||||||||||| | |||||||| ||
Sbjct 300 CTACCATCTCATATGGATGAGA-AGAACATATTGAATGCGGTTAGTGTTGAGAAAGACGT 358
Query 789 TGACGGATTTCATCCGCT-AA-AT-AT-T-GGACGGCTTGCCATGCGTGGAAGAGAACCC 843
||| |||||||| || || || || || | |||| ||||| ||||| |||||||||||
Sbjct 359 TGATGGATTTCACCCACTCAATATTATATTGGACTACTTGCGATGCGCGGAAGAGAACCG 418
Query 844 TTATTCGTTCCTTGTACTCCAAAAGGATGCATTGAGTTGTTGCA-TAGATACAACATTGA 902
|||| |||||| ||| ||||||||||||||| ||| |||| || | | |||||| ||||
Sbjct 419 TTATGCGTTCCGCGTATTCCAAAAGGATGCATCGAGCTGTTACACTGG-TACAACTTTGA 477
Query 903 AATCAAAGGAAAGAGAGCGGTTGTTATCGGAAGGAGTAACA-TTGTCGGTATGCCAGCTG 961
||||||| ||||||||| |||||| | ||||||||||||| || | ||||||||| |||
Sbjct 478 GATCAAAGAAAAGAGAGCAGTTGTTCTTGGAAGGAGTAACACTTTT-GGTATGCCAACTG 536
Query 962 CTCTTTTACTGCAGAGGGAGGATGCAACCGTTAGCATTATCCATTCAAGAACCAAGAACC 1021
|||| ||||||||||| || ||||||| |||| |||||||||||||| |||||||||||
Sbjct 537 CTCTGTTACTGCAGAGA-AG-ATGCAACTGTTACCATTATCCATTCAAAAACCAAGAACC 594
Query 1022 CTGAAGAAATCACAAGAGAAGCTGATATTATAATCTCAGCTGTTGGACAGCCAAACATGG 1081
|||||||||| |||||| |||||||||| |||||||| ||||||||||| ||||||||||
Sbjct 595 CTGAAGAAATTACAAGACAAGCTGATATCATAATCTCGGCTGTTGGACAACCAAACATGG 654
Query 1082 TCAGAGGAAGCTGGATAAAACCGGGCGCAGTCCTCATCGATGTTGGGATTAATCCTGTTG 1141
||||| ||||||||||||||||||| |||||| ||||| ||||||||| || | ||||
Sbjct 655 TCAGAAGAAGCTGGATAAAACCGGGTGCAGTCGTCATCAATGTTGGGACTAGTGTTGTTA 714
Query 1142 AGGATCCAAGTGCTGCGCGTGGATATCGATTGGTTGGAGACATTTGCTACGAGGAGGCTA 1201
||||| |||| ||| | ||| | |||| |||| ||||||||||||| ||||||| |
Sbjct 715 AGGATTCAAGCGCTCCATATGGCTTTCGAATGGTCGGAGACATTTGCTTTGAGGAGGTTT 774
Query 1202 GCAAAGTTGCATCAGCCATCACACCTGTTCC-TG-G-CGGTGTAGG-ACCAATGACCATA 1257
||||||||||||||||||||||||||| | | || | | | | | | |||| ||| |
Sbjct 775 GCAAAGTTGCATCAGCCATCACACCTGATGCGTGTGGCCCT-TCGTTATTAATGGCCAAA 833
Query 1258 GCCATGCTTCTATCCAACACTTTAACATCAGCTAAGAGGATTCACAACTTCCA-GTGACG 1316
|||||||||||||||||||||||||||||||| ||||| |||||||||||| | || ||
Sbjct 834 GCCATGCTTCTATCCAACACTTTAACATCAGCCAAGAGAATTCACAACTTC-ATGTAAC- 891
Query 1317 TCACTTAAAAAGAAGATTGCT 1337
| ||||||||||| ||||||
Sbjct 892 -C-CTTAAAAAGAATATTGCT 910
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58087623625
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5