BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00650.1
Length=1996
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949655 jgi|Araly1|949655|scaffold_801542.1 2146 0.0
> Ahg949655 jgi|Araly1|949655|scaffold_801542.1
Length=1846
Score = 2146 bits (1162), Expect = 0.0
Identities = 1521/1685 (90%), Gaps = 61/1685 (4%)
Strand=Plus/Plus
Query 1 ATGTCCAATTATCCACCGACGGTGGCGGCGCAACCCACAACGACGGCGAATCCACTGCTG 60
||| ||||||||||||| ||||||||||||||| || ||||| |||||| ||||||||||
Sbjct 24 ATGGCCAATTATCCACCAACGGTGGCGGCGCAATCCTCAACGGCGGCGATTCCACTGCTG 83
Query 61 ---CAGCGACATCAATCTGAACAG-CGACGAAGAGAATTACCGAAGATTGTCGAAACAGA 116
|||||||| |||||||||| | ||||| ||||||||||| | |||||||||||||
Sbjct 84 CACCAGCGACACCAATCTGAAC-GACGACGTGGAGAATTACCGGCGGTTGTCGAAACAGA 142
Query 117 GTCTACAAG-TATGGACATTACGATCGGTCAATCTAAGCAGCCTCAATTTTTGAAATCCA 175
|||||| || |||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 143 GTCTAC-AGCTATGGAAATTTCGATCGGTCAATCTAAGCAGCCTCAATTTTTGAAATCCA 201
Query 176 TAGACGAATTAGCTGCGTTTTCAGTTGCAGTGGAAACATTCAAACGCCAATTCGATGATC 235
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 202 TAGACGAATTGGCTGCGTTTTCAGTTGCAGTGGAAGCATTCAAACGCCAATTCGATGATC 261
Query 236 TTCAGAAGCACATCGAGTCAATCGAAAACGCAATTGATTCCAAACTCGAGAGTAACGGCG 295
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 262 TTCAGAAGCACATCGAGTCAATCGAAAACGCAATTGATTCCAAACTCAAGAGTAACGGCG 321
Query 296 TTGTCCTCGCCGCGCGGAACAATAATTTCCATCAGCCGATGTTATCGCCTCCGCGGAACA 355
| ||||||||| | ||||||||||||||| |||||||||||||||||||||
Sbjct 322 CCGACCTCGCCGC-TTCTTC--CAATTTCCATCAGCCGTTGTTATCGCCTCCGCGGAACA 378
Query 356 ATGTATCTGTAGAAACCACCGTCACTGTGAGCCAACCGTCTC---A------GGAGATTG 406
||| || ||||| |||||||| | | |||||||| |||| | | ||||| ||
Sbjct 379 ATGCCTCCGTAGAGACCACCGTGAGTTTGAGCCAATCGTCACAGGAGCCTGCGGAGACTG 438
Query 407 TACCGGAGACGTCGAATAAACCGGAGGGGGAAC-GTATATGTGAGTTGATGTGTAGCAAA 465
|||||||||||||||||||| |||||||||||| || | |||||||||||||||||||||
Sbjct 439 TACCGGAGACGTCGAATAAAGCGGAGGGGGAACGGT-TGTGTGAGTTGATGTGTAGCAAA 497
Query 466 GGTCTGCGTAAATACATATACGCGAATATCTCTGATCA-AGCTAAGTTAATGGAAGAGAT 524
|||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||
Sbjct 498 GGTCTGCGTAAATACATATACGCGAATATCTCTGAT-AGAGCTAAGCTAATGGAAGAGAT 556
Query 525 TCCTTCAGCTTTGAAATTGGCCAAGGAGCCAGCGAAGTTTGTATTGGATTGTATTGGCAA 584
||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||| ||
Sbjct 557 TCCTTCAGCTTTGAAATTGGCTAAGGAGCCAGCGAAGTTTGTGTTGGAATGTATTGGGAA 616
Query 585 GTTTTACTTACAAGGGCGTAGAGCATTTACTAAAGAGTCGCCTATGAG-CTCTGCGAGAC 643
|||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||
Sbjct 617 GTTTTACTTACAAGGGCGTAGAGCATTTACGAAAGAGTCGCCTATG-GTCTCTGCGAGAC 675
Query 644 AAGTTTCGCTTCTTATACTGGAGTCTTTTCTTCTAATGCCTGATCGTGGTAAAGGGAAGG 703
| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 676 AGGTTTCGCTTCTTATTTTGGAGTCTTTTCTTCTAATGCCTGATCGTGGTAAAGGGAAGG 735
Query 704 TGAAGATTGAGAGTTGGATTAAA-GATGAGGCGGAGACGGCTGCTGTTGCTTGGAGGAAA 762
| |||||||||||||| | |||| |||||||||||| ||||||||||||| |||||||||
Sbjct 736 TCAAGATTGAGAGTTGTA-TAAAGGATGAGGCGGAGGCGGCTGCTGTTGCGTGGAGGAAA 794
Query 763 AGGTTGATGA-CTGAAGGAGGATTAGCTGCGGCTGAGAAAATGGATGCAAGGGGTTTGCT 821
|| |||||| | |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 795 AGACTGATGAGC-GAAGGAGGATTAGCTGCGGCAGAGAAAATGGATGCAAGGGGTTTGCT 853
Query 822 TTTACTAGTTGCTTGTTTTGGTGTTCCTTCAAACTTTAGGAGTACAGATTTGCTGGATTT 881
||||||||||||||||||||| |||||||||||||| ||||||| |||||| |||||||
Sbjct 854 TTTACTAGTTGCTTGTTTTGGGGTTCCTTCAAACTTAAGGAGTATGGATTTGTTGGATTT 913
Query 882 GATAAGGATGAGTGGTTCGAATGAGATTGCCGGTGCTTTGAAGCGGTCA----------- 930
|||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 914 GATACGGATGAGTGGTTCGAATGAGATTGCGGGTGCTTTGAAGCGGTCACCCTTTCTTGT 973
Query 931 --C-A-G-TTTCAGGTATAGTTGAATCAAGTATCAAGCGTGGAATGCATATTGAAGCTCT 985
| | | || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 974 CCCTATGATTCCAGGTATAGTTGAATCAAGTATCAAGCGTGGAATGCATATTGAAGCTCT 1033
Query 986 TGAAATGGTTTATACCTTTGGCATGGAGGATAAGTTTTCAGCTGCT-CTAGTTCTAACTT 1044
||| ||||||||||||||||| ||||||||||||||||||||| || || ||||||||||
Sbjct 1034 TGAGATGGTTTATACCTTTGGGATGGAGGATAAGTTTTCAGCTTCTTCT-GTTCTAACTT 1092
Query 1045 CATTCTTAAAGATGAGCAAGGAGTCATTTGAGAGGGCAAAACGGAAAGCCCAGTCACCGC 1104
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1093 CATTCTTAAGGATGAGCAAGGAGTCATTTGAGAGGACAAAACGGAAAGCCCAGTCACCGC 1152
Query 1105 TGGCATTTAAAGAAGCGGCTACAAAGCAGCTAGCTGTGTTATCATCAGTTATGCAGTGTA 1164
||||||||||||| ||| || ||||||||||||||| |||||||||||| ||||||||||
Sbjct 1153 TGGCATTTAAAGAGGCGACTGCAAAGCAGCTAGCTGCGTTATCATCAGTGATGCAGTGTA 1212
Query 1165 TGGAGACTCACAAGTTAGATCCTGCGAAAGAACTACCAGGATGGCAGATCAAAGAGCAAA 1224
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1213 TGGAGACTCACAAGTTAGATCCTGCGAAAGAACTACCAGGGTGGCAGATCAAAGAGCAAA 1272
Query 1225 TTGTTAGCTTGGAGAAAGACACTCTTCAGCTCGACAAAGAGATGGAAGAGAAAGCAAGAT 1284
|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1273 TTGTTAATTTGGAGAAAGACACTCTTCAGCTCGACAAAGGGATGGAAGAGAAAGCAAGAT 1332
Query 1285 CTC-TCAGTTTAATGGAGGAAGCCGCACTTGCCAAGAGAATGTATAACCAACAGATAAAA 1343
| | ||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||
Sbjct 1333 C-CATCAGTTTAATGGAGGAAGCGGTACTCGCCAAGAGAATGTATAACCAACAGATGAAA 1391
Query 1344 CGTCCAAGGTTATCACCCATGGAAATGCCACCAGTAACTTCTTCATCGTATTCTCCTATC 1403
||||||||||| ||||||||||| |||||||||||| |||| ||||| ||||||||||||
Sbjct 1392 CGTCCAAGGTTGTCACCCATGGAGATGCCACCAGTAGCTTCGTCATCATATTCTCCTATC 1451
Query 1404 TACCGTGATAGAAGCTTTCCTAGTCAAAGAGACGATGACCA-AGATGAAATATCAGCTCT 1462
|||| |||| | ||||||| |||||| |||||||| || | ||||||||||||||||||
Sbjct 1452 TACCTTGATCGTAGCTTTCATAGTCAGAGAGACGAAGAT-AGAGATGAAATATCAGCTCT 1510
Query 1463 TGTGAGTAGTTACCTCGGCCCGTCAACATCTTTTCCTCATCGCTCAAG----A--AGATC 1516
||||| ||||||||||||||||||| |||||||||||||||||||||| | |||||
Sbjct 1511 TGTGAATAGTTACCTCGGCCCGTCATCATCTTTTCCTCATCGCTCAAGTCTCAGGAGATC 1570
Query 1517 CCCGGAATATATGGTTCCACTTCCACATGGTGGGTTAGGAAGAAGTGTATATGCATATGA 1576
||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 1571 CCCTGAATATATGGTTCCACTTCCACCTGGTGGGTTAGGAAGAAGCGTATATGCATATGA 1630
Query 1577 ACATCTGGCC-CCAAATTCATATTCTCCAGGTCACGGACATAGACTTC-ATCGACAGTAC 1634
|||||| || ||||||||||| ||||| ||||||||||| |||| || | |||||||||
Sbjct 1631 ACATCTA-CCTCCAAATTCATACTCTCCGGGTCACGGACAGAGACATCCA-CGACAGTAC 1688
Query 1635 TCTCC 1639
|||||
Sbjct 1689 TCTCC 1693
Score = 289 bits (156), Expect = 7e-77
Identities = 176/186 (95%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 1649 TCACGGACAGAGACATCCACTACAGTACTCTCCTCCAATTCATGGACAACAACAGTTACC 1708
|||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||
Sbjct 1661 TCACGGACAGAGACATCCACGACAGTACTCTCCTCCAGTTCATGGACAACAACAAATACC 1720
Query 1709 ATATGGTATACAAAGGGTTTACAGACATTCACCATCTGAAGAAAGATATTTGGGTTTATC 1768
|| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1721 ATTTGGTCTACAAAGAGTTTACAGACATTCACCATCTGAAGAAAGATATTTGGGTTTATC 1780
Query 1769 CAATCAAAGGTCTCCTCGCAGTAACTCATCATTAGACCCCAAATAGGAGGAATGTAAATT 1828
|||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 1781 CAATCACAGGTCTCCTCGTAGTAACTCATCACTAGACCCCAAATAGGAGGAATGTAAATT 1840
Query 1829 TGTAAC 1834
||||||
Sbjct 1841 TGTAAC 1846
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75037782650
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5