BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00660.2
Length=2804
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490504 jgi|Araly1|490504|fgenesh2_kg.6__3638__AT4G00660.2 3879 0.0
> Ahg490504 jgi|Araly1|490504|fgenesh2_kg.6__3638__AT4G00660.2
Length=2687
Score = 3879 bits (2100), Expect = 0.0
Identities = 2543/2742 (93%), Gaps = 90/2742 (3%)
Strand=Plus/Plus
Query 52 ATTGACCCTTTTGATCTCTCTCTGTCTCGCTTTCTTCCTCGCGTGGACCTTTTTCGAAAA 111
|||||||||||||| |||||| ||||| || |||||||||||||||| |||||||||
Sbjct 1 ATTGACCCTTTTGA--TCTCTC--TCTCG--TT-TTCCTCGCGTGGACCTCTTTCGAAAA 53
Query 112 ATATCAATCCCAGAATTTCGCTTCATTTTGGA-TTATAAACTCCCAGATCTGCTACTCTC 170
||||||||||| |||||| |||| |||||||| || |||| | ||||||||||||||||
Sbjct 54 ATATCAATCCCCGAATTTTGCTTGATTTTGGAGTT-TAAA-TTCCAGATCTGCTACTCTT 111
Query 171 TATCTCCGATTTTGTGATTTTT-CAAACCCTAGATTTCTCCGGAAGAGTTTAtttttttC 229
||||| ||||| |||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 112 TATCTTCGATTCTGTGATTTTTACAAACCCTAGATTTCTCCGGAAGAGTTTA---TTTTC 168
Query 230 TCTGTAACTAAACCGAGAtttttttttCAAAATTCCGACATTACCCTAGGTTGTGTATTA 289
| | | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 169 -C-G----T------A-ATTTTTTTTTCAAAATTCCGACATTACCCTAGGTTGTGTATTA 215
Query 290 CCGTA-GAAAACCCTAGTTCCTTTTTGGTATT-CTTGGTGTACAGATCCCTTCCTTAGTC 347
||||| ||||| |||||||||| |||||| || ||| ||||||||| ||| |
Sbjct 216 CCGTAGGAAAA-CCTAGTTCCTGTTTGGTGTTCCTT-GTGTACAGA-----TCC-----C 263
Query 348 AGAGTTTTTGGTTATTAGTGTTTAGAGGTTTGTGATGAACAATCGAGGAAGGTACCCTCC 407
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 264 ----TTTTTGGTTATTAGTGTTTAGAGGTTTGTGATGAACAATCGAGGAAGGTATCCTCC 319
Query 408 TGGAATTGGCGCTGGCCGTGGAGCCTTTAACCCTAACCCTAATTACCAATCACGGTCGGG 467
||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||
Sbjct 320 TGGAATTGGCGCTGGCCGTGGAGCCAGTAACCCTAACCCTAATCACCAATCACGGCCGGG 379
Query 468 TTAT---CAACAACATCCGCCGCCCCAATACGTTCAACGCGGTAATTACGCTCAGAATCA 524
|||| |||||||| |||||||| ||||||||||||||||||| ||||||||||||| |
Sbjct 380 TTATCAACAACAACAACCGCCGCCACAATACGTTCAACGCGGTAGTTACGCTCAGAATTA 439
Query 525 CCAACAACAGTTTCAACAAGCGCCGTCTCAGCCGCATCAATACCAACAGCAACAGCAGCA 584
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 440 CCAACAACAGTTTCAACAAGCGACGTCTCAGCCGCATCAATACCAACAG---CAGCAGCA 496
Query 585 ACAACAACAATGGCTTCGAAGAGGTCAGATCCCC---GG---CGGTAACAGTAACGGTGA 638
||||||||||||||||||||||| |||||||||| || | ||||||||||||||||
Sbjct 497 ACAACAACAATGGCTTCGAAGAGCTCAGATCCCCGGTGGTAACAGTAACAGTAACGGTGA 556
Query 639 CGCTGTTGTAGAAGTTGAGAAAACTGTTCAATCCGAAGTTATCGACCCAAACTCGGAAGA 698
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 557 CGCTGTTGTAGAAGTTGAGAAAACTGTTCAGTCCGAAGTTATCGACCCAAATTCGGAAGA 616
Query 699 TTGGAAAGCAAGGCTAAAACTACCTGCACCTGATACTCGATACAGAACAGAGGATGTGAC 758
|||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 617 TTGGAAGGCCAGGCTAAAACTACCTGCACCTGATACTCGCTACAGAACAGAGGATGTGAC 676
Query 759 AGCCACCAAAGGGAACGAGTTTGAAGATTACTTTTTGAAACGGGAGCTTCTCATGGGAAT 818
||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 677 AGCCACCAAAGGGAATGAGTTTGAAGATTATTTTTTGAAACGAGAGCTTCTCATGGGAAT 736
Query 819 ATATGAGAAGGGTTTTGAAAGACCTTCTCCTATTCAGGAAGAGAGTATTCCAATTGCCTT 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 737 ATATGAGAAGGGTTTTGAAAGACCTTCTCCTATTCAGGAAGAGAGTATTCCAATTGCCTT 796
Query 879 AACTGGTAGAGATATCCTTGCCAGAGCAAAGAACGGGACTGGAAAGACCGCCGCCTTTTG 938
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 797 GACTGGTAGAGATATCCTTGCCAGAGCAAAGAACGGGACTGGAAAGACCGCCGCCTTTTG 856
Query 939 TATTCCTGTCTTGGAAAAAATTGACCAAGATAACAACGTTATTCAAGCTGTTATAATTGT 998
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 857 TATTCCTGTCTTGGAAAAAATTGACCAAGATAACAACGTTATTCAAGCTGTTATAATTGT 916
Query 999 TCCGACTCGAGAGTTAGCCCTTCAGACATCACAGGTCTGTAAAGAGCTGGGTAAGCATTT 1058
||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 917 TCCAACTCGAGAGTTAGCCCTTCAGACATCACAGGTGTGTAAGGAGCTGGGTAAGCATTT 976
Query 1059 GAAGATTCAAGTCATGGTGACCACTGGTGGCACCAGTCTGAAAGACGATATCATGCGTTT 1118
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 977 GAAGATTCAAGTCATGGTGACCACTGGGGGCACCAGTCTGAAAGACGATATCATGCGTTT 1036
Query 1119 GTATCAGCCTGTTCATTTACTGGTAGGAACTCCTGGGAGAATTCTGGATCTTACCAAGAA 1178
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1037 GTATCAGCCTGTTCATTTACTGGTAGGAACTCCTGGGAGAATTCTGGATCTTGCCAAGAA 1096
Query 1179 AGGTGTTTGTGTTTTAAAAGATTGTTCGGTGCTTGTTATGGATGAGGCTGACAAGCTTTT 1238
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1097 AGGTGTTTGTGTTTTAAAAGATTGTTCAGTGCTTGTTATGGATGAGGCTGATAAGCTTTT 1156
Query 1239 GTCTCAAGAGTTCCAACCTTCAGTGGAACATTTGATTAGCTTTCTTCCAGAAAGTCGTCA 1298
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1157 GTCTCAAGAGTTCCAACCTTCAGTGGAACATTTGATTAGCTTTCTTCCAGAAAATCGTCA 1216
Query 1299 GATTTTGATGTTCTCAGCCACCTTCCCTGTCACTGTCAAGGATTTTAAGGATAGGTTTCT 1358
||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
Sbjct 1217 GATTTTGATGTTCTCAGCCACGTTCCCTGTCACTGTCAAGGATTTTAAGGATAGATTTTT 1276
Query 1359 GACGAATCCTTACGTCATCAATCTCATGGATGAACTTACGCTCAAGGGTATTACCCAATT 1418
|||||||||||| |||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 1277 GACGAATCCTTATGTCATCAATCTCATGGATGAACTTACACTCAAGGGAATCACCCAATT 1336
Query 1419 CTATGCTTTCGTTGAAGAAAGACAGAAAATTCATTGCTTGAATACACTATTCTCCAAGCT 1478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1337 CTATGCTTTCGTTGAAGAAAGACAGAAAATTCATTGCTTGAATACACTATTCTCCAAGCT 1396
Query 1479 GCAAATTAACCAATCAATCATATTCTGCAATTCTGTAAATCGTGTGGAGCTCTTAGCCAA 1538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1397 GCAAATTAACCAATCAATCATATTCTGCAATTCTGTAAATCGTGTGGAGCTCTTAGCTAA 1456
Query 1539 GAAAATCACAGAACTTGGGTATTCATGCTTTTACATCCATGCAAAGATGCTTCAAGACCA 1598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1457 GAAAATCACAGAACTTGGGTATTCATGCTTTTACATCCATGCAAAGATGCTTCAAGACCA 1516
Query 1599 CCGAAACAGAGTGTTCCATGACTTCCGGAATGGTGCATGCCGTAATCTCGTGTGTACTGA 1658
|||||||||||| ||||||||||| || |||||||||||||| ||||| |||||||||||
Sbjct 1517 CCGAAACAGAGTCTTCCATGACTTTCGCAATGGTGCATGCCGGAATCTTGTGTGTACTGA 1576
Query 1659 CTTGTTCACACGTGGTATTGACATTCAAGCCGTCAATGTGGTGATAAACTTTGATTTCCC 1718
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1577 CTTGTTCACACGTGGGATTGACATTCAAGCAGTCAATGTGGTGATAAACTTTGATTTCCC 1636
Query 1719 AAAGAATGCTGAAACTTATCTCCATAGGGTTGGACGATCAGGAAGGTTTGGCCATCTTGG 1778
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1637 AAAGAATGCAGAAACTTATCTCCATAGGGTTGGACGATCAGGAAGGTTTGGCCATCTTGG 1696
Query 1779 TCTAGCTGTGAATCTTATCACCTATGAAGATCGATTTAACCTTTACCGGATTGAGCAAGA 1838
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1697 TCTAGCTGTGAATCTTATCACTTATGAAGACCGATTTAACCTTTACCGGATTGAGCAAGA 1756
Query 1839 GCTTGGAACGGAGATCAAGCAAATTCCTCCACATATCGATCAGGCAATTTATTGCCAATA 1898
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1757 ACTTGGAACAGAGATCAAGCAAATTCCTCCACATATCGATCAGGCAATTTATTGCCAATA 1816
Query 1899 ACCAAGGGTTGGTTGAAGCCATGGTTAGACAGTTGTCTTATCTAGCCATGCAGGACAAGG 1958
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1817 ACCAAGGGTTGGTTGAAGCCATGGTTAGACAGTTGTCTTATCTAGCCATGCAGGACAACG 1876
Query 1959 ACAACCCAAAAAGGCTTCACATTCTGCCTCTTACCTCCATAATGtttttttCTGCGTCTT 2018
|||||||||||||||||||||||||||||||| | | | ||| ||||||| |
Sbjct 1877 ACAACCCAAAAAGGCTTCACATTCTGCCTCTT---T---T--T-TTT----CTGCGTCAT 1923
Query 2019 TGGGATTCCTTTATTTTTAAAGATTAACTATAGTCAAGGCTAAAAGGTTTGAAATACCGG 2078
|||||||||||||| | ||||||||||||||| ||||||||| |||||||||||| ||||
Sbjct 1924 TGGGATTCCTTTATATCTAAAGATTAACTATATTCAAGGCTAGAAGGTTTGAAATGCCGG 1983
Query 2079 GTAGTATTACAAAAGTGAAGTCTTTTATTTAGTTTTAACAAGTCGTTTGAG-CTATTGTT 2137
|||||||| ||| |||||| ||||||||||||||||||||||||||||| |||| |||
Sbjct 1984 GTAGTATTGGAAACGTGAAGCCTTTTATTTAGTTTTAACAAGTCGTTTGATACTAT-GTT 2042
Query 2138 TCTTTCTATGCCGTAGACTGATCAGTGGTTACAGTGTTGTGATGCGTCTTCAAGGAGCTG 2197
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2043 TCTTTCTATGCTGTAGACTGAT-AGTGGTTACAGTGTTGTGATGCGTCTTCAAGGAGCTG 2101
Query 2198 TGGTTTCATGACTCTTT-CATGATCCTTTTCCAGCTTTCCAACTTCAATAATAAGTCTTT 2256
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 2102 TGGTTTCATGACTCTTTTCATGATCCTTTTCCAGCTTTCCAACTCCAATAATAAGTCTT- 2160
Query 2257 GAGACCTTAAGATGAGATTTTCCtttttttCCATTTACACAGGTTGCTGATTTTATTTTA 2316
||||||||||||||| ||||||| |||| |||||| | |||||||| |||||||| |||
Sbjct 2161 GAGACCTTAAGATGATATTTTCCCTTTT--CCATTTTCCCAGGTTGCAGATTTTATATTA 2218
Query 2317 GCATGTTTTGTGTTGTCAATAGGTAGATTAGTTCAGGATTTGGTCTGTGGACAATGGACA 2376
|||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
Sbjct 2219 GCATGTTTTGTGTTGTCAATAGGTTGATTAGTTCAGGATTTGGTCTGAGGACA--G---- 2272
Query 2377 ATGAATTTTGCACTCTCTTGTTT-TATGAGCAACACAAGCAAAACACACAACATACAAAA 2435
||||||| ||| |||||||||| | ||| ||||||||||||||||||||||||| ||||
Sbjct 2273 -TGAATTTAGCAGTCTCTTGTTTCT-TGACCAACACAAGCAAAACACACAACATATAAAA 2330
Query 2436 GATACAAGTATGAACATAGGATACCGGAGATAGGTGATAATCTGTATCACAGGTTAGTGC 2495
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2331 GATACAAGTATGAACATAGGATAGTGGAGATAGGTGATAATCTGTATCACAGGTTAGTGC 2390
Query 2496 TGATCTCAGAAGCAGCTCAAAGATGACTTCTTGGGTATCTTTCCTGCGGCTTGAAACCTA 2555
||||||||||||||||| |||||||||||||||||||||| ||| || ||||||| ||||
Sbjct 2391 TGATCTCAGAAGCAGCTAAAAGATGACTTCTTGGGTATCTGTCCGGCTGCTTGAAGCCTA 2450
Query 2556 GCAGCAGCTTCTTCCGCAT-CAAGGATCTCTTGAGCCCGTCTGGTTTGAACATCTGCCTT 2614
||||| |||||||||||| || | |||||||||||||||||||||||||||| ||| ||
Sbjct 2451 GCAGCTTCTTCTTCCGCATTCA-GAATCTCTTGAGCCCGTCTGGTTTGAACATTTGCTTT 2509
Query 2615 CTTCTT-TTGTGCCTTTGCATGAACTGCCGCTTTTTCGTTCCTTAGTTTCTCAGATTTCT 2673
||| || ||||||||||||||||||||| ||||||| | |||||||||||||||||||||
Sbjct 2510 CTT-TTCTTGTGCCTTTGCATGAACTGCTGCTTTTTAGCTCCTTAGTTTCTCAGATTTCT 2568
Query 2674 CCATCTTCTTACTGTCCATCTTCCGCTGTAGAAAACAACAATTTTTTCGTCTGTATGTTA 2733
||||||||||||||||||| ||||||||||||||||||||||||||| || ||| ||||
Sbjct 2569 CCATCTTCTTACTGTCCATTTTCCGCTGTAGAAAACAACAATTTTTTTGTTTGTTTGTTT 2628
Query 2734 GTTCTTTGACGACATGAAATGTCATGTTTCATAGTCTTGTAC 2775
|||||||||| |||||| || |||||||| ||||||||||||
Sbjct 2629 GTTCTTTGACAACATGAGATTTCATGTTTTATAGTCTTGTAC 2670
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105814700610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5