BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00680.1
Length=698
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490501 jgi|Araly1|490501|fgenesh2_kg.6__3635__AT4G00680.1 815 0.0
Ahg918780 jgi|Araly1|918780|scaffold_100061.1 510 4e-144
> Ahg490501 jgi|Araly1|490501|fgenesh2_kg.6__3635__AT4G00680.1
Length=615
Score = 815 bits (441), Expect = 0.0
Identities = 492/517 (95%), Gaps = 2/517 (0%)
Strand=Plus/Plus
Query 5 ccccccAATCCTCCTCACTCTTCCCTATCCTCTTCATTTTTCCCAATCATCAAACACAAG 64
|||| ||| ||||||||||||||||||||| || || |||||||||||| |||||||| |
Sbjct 1 CCCCACAACCCTCCTCACTCTTCCCTATCCCCTCCA-TTTTCCCAATCACCAAACACAGG 59
Query 65 ATTAGAGTTCGA-TTCTCCAAAGAAAATATGGCTAATTCAGCGTCTGGGATGCATGTGAA 123
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 60 ATTAGAGTTCGATTTCTCCAAAGAAAACATGGCTAATTCAGCGTCTGGGATGCATGTGAA 119
Query 124 TGATGAATGCAAGATTAAGTTCTTAGAGTTGAAAGCAAAGAGGACTTACAGGTTCATTGT 183
||||||||||||| |||||||||| ||||||||||||||||| ||||||||||| |||||
Sbjct 120 TGATGAATGCAAGCTTAAGTTCTTGGAGTTGAAAGCAAAGAGAACTTACAGGTTTATTGT 179
Query 184 GTTCAAAATTGATGAGAAGGCACAGCAAGTGCAAATAGAAAAGCTTGGGAATCCAGAAGA 243
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 180 GTTCAAAATTGATGAGAAGGCTCAGCAAGTCCAAATAGAAAAGCTTGGGAATCCAGAAGA 239
Query 244 AACTTACGACGATTTTACCAGCTCTATCCCCGATGACGAATGCCGATACGCTGTCTACGA 303
|||||||||||||||||||||| ||||||| ||||||||||| |||||||| ||||| ||
Sbjct 240 AACTTACGACGATTTTACCAGCGCTATCCCTGATGACGAATGTCGATACGCAGTCTATGA 299
Query 304 TTTTGATTTCACCACAGAGGACAATTGTCAGAAGAGCAAGATCTTTTTCATCGCGTGGTC 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TTTTGATTTCACCACAGAGGACAATTGTCAGAAGAGCAAGATCTTTTTCATCGCGTGGTC 359
Query 364 ACCTGATACATCGAGAGTTCGGAGTAAGATGTTGTATGCAAGCTCAAAAGACAGGTTCAA 423
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 ACCTGATACATCAAGAGTTCGGAGTAAGATGTTGTATGCAAGCTCAAAAGACAGGTTCAA 419
Query 424 GAGAGAAATGGAAGGAATTCAAGTTGAATTGCAAGCAACTGATCCTAGTGAGATGAGCCT 483
|||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 420 GAGAGAAATGGATGGAATTCAAGTTGAATTGCAAGCAACTGATCCAAGCGAGATGAGCCT 479
Query 484 TGACATCATCAAAGGACGACTCAATCTCTGAGCAACA 520
||||||||||||||||||||||||||||||| |||||
Sbjct 480 TGACATCATCAAAGGACGACTCAATCTCTGAACAACA 516
> Ahg918780 jgi|Araly1|918780|scaffold_100061.1
Length=553
Score = 510 bits (276), Expect = 4e-144
Identities = 381/432 (88%), Gaps = 5/432 (1%)
Strand=Plus/Plus
Query 85 AGAAAATATGGCTAATTCAGCGTCTGGGATGCATGTGAATGATGAATGCAAGATTAAGTT 144
|||| | |||||||||||||||||||||||||| || | ||||| |||||| | |||||
Sbjct 18 AGAACA-ATGGCTAATTCAGCGTCTGGGATGCACGTTAGCGATGACTGCAAGCTCAAGTT 76
Query 145 CTTAGAGTTGAAAGCAAAGAGG-ACTTACAGGTTCATTGTGTTCAAAATTGATGAGAAGG 203
||| |||||||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 77 CTTGGAGTTGAAAGCAAAGAGGAAC-TATAGGTTCATTGTGTTCAAAATTGATGAGAAGG 135
Query 204 CACAGCAAGTGCA-AATAGAAAAGCTTGGGAATCCAGAAGAAACTTACGACGATTTTACC 262
| |||||||| | || || ||||||||||||||||||||||||||||||||||| |||
Sbjct 136 CTCAGCAAGT-TATGATTGACAAGCTTGGGAATCCAGAAGAAACTTACGACGATTTCACC 194
Query 263 AGCTCTATCCCCGATGACGAATGCCGATACGCTGTCTACGATTTTGATTTCACCACAGAG 322
|| ||||| ||||| ||||| |||||||| |||||||| || ||||||||||||||
Sbjct 195 AGATCTATTCCCGAGGACGAGTGCCGATATGCTGTCTATGACTTTGATTTCACCACTCCT 254
Query 323 GACAATTGTCAGAAGAGCAAGATCTTTTTCATCGCGTGGTCACCTGATACATCGAGAGTT 382
|| || || ||||||||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct 255 GAGAACTGCCAGAAGAGCAAAATCTTTTTCATCGCATGGTCACCTGATACATCAAGAGTG 314
Query 383 CGGAGTAAGATGTTGTATGCAAGCTCAAAAGACAGGTTCAAGAGAGAAATGGAAGGAATT 442
| |||||||||||||||||||||||||| |||||||||||||| ||| |||| || |||
Sbjct 315 AGAAGTAAGATGTTGTATGCAAGCTCAAAGGACAGGTTCAAGAGGGAATTGGATGGGATT 374
Query 443 CAAGTTGAATTGCAAGCAACTGATCCTAGTGAGATGAGCCTTGACATCATCAAAGGACGA 502
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||
Sbjct 375 CAAGTTGAATTGCAAGCAACAGATCCTAGCGAGATGAGCCTCGACATCATCAAGGGACGA 434
Query 503 CTCAATCTCTGA 514
|||||||||||
Sbjct 435 GTCAATCTCTGA 446
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25656723141
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5