BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G00700.1 Length=3375 Score E Sequences producing significant alignments: (Bits) Value Ahg490500 jgi|Araly1|490500|fgenesh2_kg.6__3634__AT4G00700.1 4850 0.0 > Ahg490500 jgi|Araly1|490500|fgenesh2_kg.6__3634__AT4G00700.1 Length=3225 Score = 4850 bits (2626), Expect = 0.0 Identities = 3054/3257 (94%), Gaps = 44/3257 (1%) Strand=Plus/Plus Query 46 CTCTTTCTTGTTCTTGCAACTC-TTATTCACCTCTTCTTATAGAAGTCCATGG--TT--T 100 |||||| |||||||||| |||| |||||||||||||||| || |||||||||| || | Sbjct 1 CTCTTTATTGTTCTTGCTACTCGTTATTCACCTCTTCTTTTAAAAGTCCATGGTTTTGGT 60 Query 101 TTCGTGTTTCAGAGTTTTCTCTAACTTAGAAATCTCTTTTCCTCTGCAGTTGTCTCTTCT 160 ||||||||||||||||||||| ||||||| || | ||| | || || | || Sbjct 61 TTCGTGTTTCAGAGTTTTCTCAAACTTAGGAA-------T-CTC--C--TT-TC-C-TC- 104 Query 161 TGCCTTCTATTGCTGATAAGGTGTTTTGAAAGAAGaaaaaaaGCCTAAAATGAGCAATAT 220 || | | | ||||||| |||||||||| || | |||||| ||||||||||||| Sbjct 105 TG----C-A--GTTGATAAGTTGTTTTGAAA-AA-AGCCTAAGCCTCAAATGAGCAATAT 155 Query 221 AAAGCTAGGAGTTGAAGTGATAAGCGCACAGGGTCTGTTACAGAGAGATAAGCATAACTC 280 ||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 156 AAAGCTAGGCGTTGAAGTGATAAGCGCACAGGGTCTGTTTCAGAGAGACAAGCATAACTC 215 Query 281 ATGTAGCCCTTTCGTGGAGCTCAAGTTCGACAACCAGATATTCCGCGCAACGACCAAACA 340 |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct 216 ATGTAGCCCTTTCGTGGAGCTCAAGTTCGACAACCAGATATTCCGCACAACCACCAAACA 275 Query 341 CAACGACCCAAATCCTGTCTGGCACGAGTGTTTTTACTTCGTTGTCTCTGACCCTTCCGT 400 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 276 CAACGACCCAAATCCTGTCTGGCACGAGTGTTTTTACTTCGTTGTCTCTGATCCTTCCGT 335 Query 401 CTTGTCAACTCGTACGCTTGAAGCCCACGTTTACAGCTACCAGAACGAATTCGATGCTAA 460 |||||||| |||||| || ||||||||||| ||||||||||||||||||||||||||||| Sbjct 336 CTTGTCAAATCGTACACTCGAAGCCCACGTCTACAGCTACCAGAACGAATTCGATGCTAA 395 Query 461 GCCCTTTCTTGGCAAAGTTCGAGTCAACGGAACATCTTTTGTTCCTCGCTCTGAAGCAGC 520 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 396 GCCCTTTCTTGGCAAAGTTCGAGTCAACGGAACATCTTTTGTTCCTCGCTCTGAAGCAGC 455 Query 521 TCCTTTCAATTACCCTTTAGAGAAACGCAGTGTTTTCTCTCGAGCCCGTGGAGAACTTTG 580 |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| | Sbjct 456 TCCTTTCAATTACCCTCTAGAGAAACGCAGTGTTTTCTCTCGAGCACGTGGAGAACTTGG 515 Query 581 CTTGAGAGTTTTTATCACAGACGACCCTTCTGTTACACCTTCTGTCCCAACCCCGGTTCC 640 |||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||| Sbjct 516 CTTGAGAGTTTTTATCACAGACGATCCTGCTATTACACCTTCTGTCCCAACCCCGGTTCC 575 Query 641 AGAATCTCCTCAAGCTTATAGCCCAAGTCCGCGTAAAGAACATGTGAAGTCCTTAATCAC 700 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 576 AGAATCTCCTCAAGCTTTTAGCCCAAGTCCGCGTAAAGAACATGTGAAGTCCTTAATCAC 635 Query 701 AGCCGATGCAAGTATGGCTACTGATGAGAGAAGAGAGCTAAAGCCTAAAACACGTACGTT 760 ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 636 AGCTGATGCAAGTATGGCTGCTGATGAGAGAAGAGAGCTAAAGCCTAAAACACGTACGTT 695 Query 761 TCATAACTCTGCCCCTTTAGTGAAACAACAGCCAATGATGAACTATGGCATCCACGAGAT 820 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 696 TCATAACGCTGCCCCTTTAGTGAAACAACAGCCAATGATGAACTATGGCATCCACGAGAT 755 Query 821 GAGAGCTGCACCGATGCCTCCAAGAGTGGTTCAAGTCAACGGTCCAGGTCCATCCTTGCA 880 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 756 GAGAGCTGCACCGATGCCTCCAAGAGTGGTTCAAGTCAACGGTCCAGGTCCATCCTTGCA 815 Query 881 CCAGCTGCCACCAGATTTCTCTGTCAAAGAAACAAGCCCTTTGCTCGGAGGTGGACGGAT 940 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 816 CCAGCTGCCACCAGATTTCTCTGTCAAAGAGACAAGCCCTTTGCTCGGAGGTGGACGGAT 875 Query 941 CGTTGGAGGACGAGTGGTTCGTGGTACAGAGAGGCCAACAAGCGGGACATATGATCTCGT 1000 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| Sbjct 876 CGTTGGAGGACGAGTGGTTCGTGGTACAGAGAAGCCAACAAGCGGCACATATGATCTCGT 935 Query 1001 TGAAGAGATGAAATTTCTCTACGTGAGAGTTGTGAAAGCGCGTGATCTCCCCAACAAAGA 1060 ||||||||||| ||| || ||||||||||||||||| ||||||||||||||||||||||| Sbjct 936 TGAAGAGATGAGATTCCTATACGTGAGAGTTGTGAAGGCGCGTGATCTCCCCAACAAAGA 995 Query 1061 CCTTACAGGAAGCCTAGACCCGTATGTCGTAGTAAAAATCGGAAACTTCAAAGGTGTTAC 1120 |||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 996 CCTTACCGGAAGCCTAGACCCGTATGTCGAAGTAAAAATCGGAAACTTCAGAGGTGTTAC 1055 Query 1121 CACACATTTTAACAAGAATACAGATCCCGAGTGGAACCAAGTCTTTGCCTTCGCTAA-AG 1179 ||| |||||| |||| ||| || |||| |||||||||||||||||||||||||| || || Sbjct 1056 CACGCATTTTGACAAAAATTCAAATCCGGAGTGGAACCAAGTCTTTGCCTTCGC-AAGAG 1114 Query 1180 ATAATCTTCAGTCGAACTTTCTTGAAGTTATGGTCAAGGATAAAGACATTCTCCTTGATG 1239 ||||||||||||| ||||||||||||||| |||| ||||||||||||||| ||||||||| Sbjct 1115 ATAATCTTCAGTCAAACTTTCTTGAAGTTGTGGTGAAGGATAAAGACATTGTCCTTGATG 1174 Query 1240 ATTTTGTTGGGATCGTTAAATTCGATCTCCGTGAGGTTCAGTCTCGCGTTCCTCCTGATA 1299 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1175 ATTTTGTTGGGATCGTTAAATTCGATCTCCGTGAGGTTCAGTCTCGCGTTCCTCCGGATA 1234 Query 1300 GTCCTTTAGCTCCCCAGTGGTACAGACTGGAGAACAAGAGAGGCGAGAAGAAGAATTATG 1359 |||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||| Sbjct 1235 GTCCTTTAGCTCCCGAGTGGTACAGATTGGAGAACAAGAGAGGTGAGAAGAAGAATTATG 1294 Query 1360 AGATAATGCTTGCTGTGTGGTCTGGAACTCAGGCTGATGAAGCTTTCGGGGATGCGACTT 1419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1295 AGATAATGCTTGCTGTGTGGTCTGGAACTCAGGCTGATGAAGCTTTCGGGGATGCGACTT 1354 Query 1420 TCTCAGACTCATTGGTAGATTCAGACAGCTCCAACATTATATCCGCTAACCTGCGCTCAA 1479 ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1355 TCTCAGATTCATTGGTATCTTCAGACAGCTCCAACATTATATCCGCTAACCTGCGCTCAA 1414 Query 1480 AAGTGTACCATTCGCCTCGGCTATGGTACCTAAGGGTGCAAATATTGGAAGCTCAGGACG 1539 ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 1415 AAGTGTACCATTCGCCTCGCCTATGGTACCTAAGGGTGCAAATATTGGAGGCTCAGGACG 1474 Query 1540 TCATCATCGTGTCTGACAAATCCCGTGTTCCAGAGGTCTTT-GTGCG-AGTAAAAGTCGG 1597 |||||||||| ||||| ||||||||| ||||||| | |||| ||| | | |||||||||| Sbjct 1475 TCATCATCGTCTCTGATAAATCCCGTCTTCCAGAAG-CTTTTGTGAGGA-TAAAAGTCGG 1532 Query 1598 TAATCAGATGTTAAGGACTAAATTTCCCCAGAGAAGCAATAATCCAAAATGGGGTGATGA 1657 |||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||| Sbjct 1533 TAATCAGATGTTAATGACTAAATTTTCCCAGAGAAGCAATAATCCAAAATGGGGAGATGA 1592 Query 1658 GTTCACGTTTGTAGTCGCGGAGCCGTTTGAGGATAA-CTTGGTCCTCTCCGTGGAAGATC 1716 ||||||||||||||||| |||||||||||||| || | |||| |||||||| ||||||| Sbjct 1593 ATTCACGTTTGTAGTCGCAGAGCCGTTTGAGGA-AAGCATGGTTCTCTCCGTCGAAGATC 1651 Query 1717 ACACTGCTCCTAACAGAGACGAGCCAGTAGGAAAAGCTGTGATTTTGATGAATGACATAG 1776 ||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||| | Sbjct 1652 ACACTGCTCCTAACAGAGATGAGCCAGTAGGAAAAGCTGTGATTTCGATGACTGACATTG 1711 Query 1777 AGAAACGTATAGATGATAAACCTTTTCATGACCGATGGGTTCATCTTGAAGACTCCATCT 1836 ||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 1712 AGAGACGTATAGATGATAAACCTTTTCATGACCGCTGGGTTCATCTCGAAGACTCCATCT 1771 Query 1837 CAGACGCTATGGATGTTGATAAAGCCAAGAAAGTGAAGTTCGCTACTAGGCTCCGGTATA 1896 ||||||||||||||| ||||||||| ||||||||||| |||||||| |||||||| |||| Sbjct 1772 CAGACGCTATGGATGCTGATAAAGCTAAGAAAGTGAAATTCGCTACAAGGCTCCGTTATA 1831 Query 1897 AGGCGGTTCTCGATGGAGGCTACCACGTTTTTGATGAGTCCATGTATAACAGCAGTGATC 1956 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1832 AGGCGGTTCTTGATGGAGGCTACCACGTTTTTGATGAGTCCATGTATAACAGCAGTGATC 1891 Query 1957 TCAGACCTTCGTCGAGAAAGCTCTGGAAACCAGCAATTGGTGTCTTGGAGCTCGGGATAC 2016 ||||||||||||| | ||||||||||||| |||| || || ||||||||||||||||||| Sbjct 1892 TCAGACCTTCGTCAAAAAAGCTCTGGAAATCAGCGATCGGAGTCTTGGAGCTCGGGATAC 1951 Query 2017 TTAACGCAAATGTGTTCCATTCGATGAAAACTCGGGAAGGGAAAGGTACTTCGGACACGT 2076 |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| | Sbjct 1952 TTAACGCAAATGTGTTTCATTCGATGAAAACTCGGGATGGGAAAGGTACTTCGGACACAT 2011 Query 2077 ACGTTGTTGCCAAATACGGTCACAAATGGGTTCGGTCACGAACTGTGATCAACAGCATGA 2136 |||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||| Sbjct 2012 ACGTTGTTGCCAAATACGGTCACAAATGGGTTCGATCACGAACTGTAATCAACACCATGA 2071 Query 2137 ATCCAAAGTACAATGAGCAATACACATGGGAGGTTTTTGATCCTGCAACGGTTTTAACCA 2196 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 2072 ATCCAAAGTACAATGAGCAATACACATGGGAGGTTTTTGATCCTGCAACAGTTTTAACCA 2131 Query 2197 TCTGCGTCTTTGACAACGCTCATTTCGCAGCAGGAGATGGCGGAAACAAGAGAGATCAGC 2256 ||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||| Sbjct 2132 TCTGCGTCTTTGATAACGCTCATTTCACAGCTGGAGATGGCGGAAACAAGAGAGATCAGC 2191 Query 2257 CGATTGGGAAAGTCCGCATTAGACTCTCGACTCTTCAGACGGGCCGTGTGTACACGCATG 2316 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 2192 CGATTGGGAAAGTCCGCATTAGACTCTCGACTCTTCAGACGGGCCGTGTCTACACGCACG 2251 Query 2317 CTTACCCTTTACTTGTTCTACAACCTACTGGTCTTAAGAAAAGAGGAGAGCTTCACTTAG 2376 |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| Sbjct 2252 CTTACCCTTTACTTGTTCTACAACCTCCTGGTCTTAAGAAAAGAGGGGAGCTTCACTTAG 2311 Query 2377 CGGTGAGATTCACCTGCACATCGGTCTCCAGTATGCTGATGAAATACACAAAACCTCTCC 2436 |||||||||||||||||||||||||||||| ||||||||| |||||||| | |||||||| Sbjct 2312 CGGTGAGATTCACCTGCACATCGGTCTCCAATATGCTGATAAAATACACCAGACCTCTCC 2371 Query 2437 TGCCTAAAATGCATTACATACTACCCTTATCCACAAACCAACAGGAAGCTCTTAAGATGC 2496 ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| || Sbjct 2372 TGCCTAAAATGCATTACATACTACCCTTATCCACAAACCAACAGGAATCTCTCAAGGCGC 2431 Query 2497 AGGCTATCAACATAATTATTGTTCGTTTAGGCCGGTCCGAGCCACCGCTGAGACGGGAAG 2556 ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 2432 AGGCTTTCAACATAATTGTTGTTCGTTTAGGCCGGTCCGAGCCACCGCTGAGACGGGAAG 2491 Query 2557 TGGTTGACTATTTGACAGAT-TGGAAAAGTCAGCTGTTCAGCATGAGGAGAAGCAAAGCC 2615 || |||| |||||||||||| || |||||||||||||||||||||||| ||||||||||| Sbjct 2492 TGATTGAGTATTTGACAGATGTG-AAAAGTCAGCTGTTCAGCATGAGGCGAAGCAAAGCC 2550 Query 2616 AACTTCAATAGGTTCACGACAGTGTTCTCCGGTGCGCTGTCTGTT-TGGAAATGGATGGA 2674 |||||||||||||||||||| |||||||| ||||||||||| | | |||||||||||||| Sbjct 2551 AACTTCAATAGGTTCACGACGGTGTTCTCGGGTGCGCTGTC-GATCTGGAAATGGATGGA 2609 Query 2675 ACAAGTGTGCACATGGAAGACTCCCGTGACGACGGCTCTGGTGCACGTGCTCTACACTAT 2734 |||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||| Sbjct 2610 ACAAGTGTGCACATGGAAGACTCCTGTGACGACGGCTCTGGTGCACGTGCTGTACGCTAT 2669 Query 2735 GCTTGTGACGTTCCCGGAGATGATTTTGCCGACTGTGTTTCTGTATATGGCTGTGATTGG 2794 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2670 GCTTGTGACGTTCCCGGAGATGATTTTGCCGACTGTGTTTCTGTATATGGCTGTGATTGG 2729 Query 2795 GATGTGGAATTACAGGTTTAAGCCTAGATTTCCTCCTCATATGGACGCCAAACTATCTTA 2854 |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 2730 GATGTGGAATTACAGGTTTAAGCCCAGATTTCCTCCTCATATGGACGCCAAACTGTCTTA 2789 Query 2855 TGCAGACAATGTAAATTCTGATGAGCTTGACGAAGAGTTTGATACCTTCCCGACCGTAAG 2914 |||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||| Sbjct 2790 TGCAGACAATGTGAATGCTGATGAGCTCGACGAAGAGTTTGATACCTTCCCGACCGTAAG 2849 Query 2915 GGCTCCGGACATTGTGAAAATGAGGTACGACCGGCTGAGATCTGTGGCCGGGAAGGTACA 2974 |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 2850 GGCTCCGGACATTGTGAAAATGAGGTACGACCGGCTGAGAAGTGTGGCCGGGAAGGTACA 2909 Query 2975 GTCGGTGGCTGGAGACATAGCCGCACAAGGAGAGCGAGTGCAAGCGTTGCTGAGCTGGCG 3034 ||||||||||||||||||||| ||||| |||||||||||||| ||| ||||||||||||| Sbjct 2910 GTCGGTGGCTGGAGACATAGCGGCACAGGGAGAGCGAGTGCAGGCGCTGCTGAGCTGGCG 2969 Query 3035 TGATCCACGCGCCACCGCAATATTCGTGACGTTCTGTTTCATTATTGCCATGGCTCTCTA 3094 ||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||| Sbjct 2970 TGATCCACGCGCCACCGCAATTTTCGTGACATTCTGTTTCATCATTGCCATGGCTCTCTA 3029 Query 3095 CATTACCCCTTTTAAACTTGTCGCTCTGTTATCCGGTTACTACTTCATGCGACATCCAAA 3154 ||||||||| |||||||| || ||||| |||| || ||||||||||||||||| || || Sbjct 3030 CATTACCCCGTTTAAACTCGTGGCTCTCCTATCGGGATACTACTTCATGCGACACCCTAA 3089 Query 3155 GCTCCGACACCGCATTCCCTCCGCTCCCGTCAACTTTTTCCGGCGACTTCCAGCCATGAC 3214 ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 3090 GCTCCGACACCGCATTCCCTCCGCTCCAGTCAACTTTTTCCGGCGACTTCCGGCCATGAC 3149 Query 3215 CGACTCTATGCTGTGAATCTTCTTCTGGATAGAGTAATCAACAAACATGCCATGTATATA 3274 |||||||||||||||||||||||| ||||||||| | |||||||||||| ||||| | | Sbjct 3150 CGACTCTATGCTGTGAATCTTCTTATGGATAGAGGAGTCAACAAACATGT-ATGTAAAAA 3208 Query 3275 A-CTCTCTTCTTTGAAT 3290 | ||| ||||||||||| Sbjct 3209 AACTCCCTTCTTTGAAT 3225 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 127416754404 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5