BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00700.1
Length=3375
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490500 jgi|Araly1|490500|fgenesh2_kg.6__3634__AT4G00700.1 4850 0.0
> Ahg490500 jgi|Araly1|490500|fgenesh2_kg.6__3634__AT4G00700.1
Length=3225
Score = 4850 bits (2626), Expect = 0.0
Identities = 3054/3257 (94%), Gaps = 44/3257 (1%)
Strand=Plus/Plus
Query 46 CTCTTTCTTGTTCTTGCAACTC-TTATTCACCTCTTCTTATAGAAGTCCATGG--TT--T 100
|||||| |||||||||| |||| |||||||||||||||| || |||||||||| || |
Sbjct 1 CTCTTTATTGTTCTTGCTACTCGTTATTCACCTCTTCTTTTAAAAGTCCATGGTTTTGGT 60
Query 101 TTCGTGTTTCAGAGTTTTCTCTAACTTAGAAATCTCTTTTCCTCTGCAGTTGTCTCTTCT 160
||||||||||||||||||||| ||||||| || | ||| | || || | ||
Sbjct 61 TTCGTGTTTCAGAGTTTTCTCAAACTTAGGAA-------T-CTC--C--TT-TC-C-TC- 104
Query 161 TGCCTTCTATTGCTGATAAGGTGTTTTGAAAGAAGaaaaaaaGCCTAAAATGAGCAATAT 220
|| | | | ||||||| |||||||||| || | |||||| |||||||||||||
Sbjct 105 TG----C-A--GTTGATAAGTTGTTTTGAAA-AA-AGCCTAAGCCTCAAATGAGCAATAT 155
Query 221 AAAGCTAGGAGTTGAAGTGATAAGCGCACAGGGTCTGTTACAGAGAGATAAGCATAACTC 280
||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 156 AAAGCTAGGCGTTGAAGTGATAAGCGCACAGGGTCTGTTTCAGAGAGACAAGCATAACTC 215
Query 281 ATGTAGCCCTTTCGTGGAGCTCAAGTTCGACAACCAGATATTCCGCGCAACGACCAAACA 340
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 216 ATGTAGCCCTTTCGTGGAGCTCAAGTTCGACAACCAGATATTCCGCACAACCACCAAACA 275
Query 341 CAACGACCCAAATCCTGTCTGGCACGAGTGTTTTTACTTCGTTGTCTCTGACCCTTCCGT 400
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 276 CAACGACCCAAATCCTGTCTGGCACGAGTGTTTTTACTTCGTTGTCTCTGATCCTTCCGT 335
Query 401 CTTGTCAACTCGTACGCTTGAAGCCCACGTTTACAGCTACCAGAACGAATTCGATGCTAA 460
|||||||| |||||| || ||||||||||| |||||||||||||||||||||||||||||
Sbjct 336 CTTGTCAAATCGTACACTCGAAGCCCACGTCTACAGCTACCAGAACGAATTCGATGCTAA 395
Query 461 GCCCTTTCTTGGCAAAGTTCGAGTCAACGGAACATCTTTTGTTCCTCGCTCTGAAGCAGC 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 396 GCCCTTTCTTGGCAAAGTTCGAGTCAACGGAACATCTTTTGTTCCTCGCTCTGAAGCAGC 455
Query 521 TCCTTTCAATTACCCTTTAGAGAAACGCAGTGTTTTCTCTCGAGCCCGTGGAGAACTTTG 580
|||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
Sbjct 456 TCCTTTCAATTACCCTCTAGAGAAACGCAGTGTTTTCTCTCGAGCACGTGGAGAACTTGG 515
Query 581 CTTGAGAGTTTTTATCACAGACGACCCTTCTGTTACACCTTCTGTCCCAACCCCGGTTCC 640
|||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||
Sbjct 516 CTTGAGAGTTTTTATCACAGACGATCCTGCTATTACACCTTCTGTCCCAACCCCGGTTCC 575
Query 641 AGAATCTCCTCAAGCTTATAGCCCAAGTCCGCGTAAAGAACATGTGAAGTCCTTAATCAC 700
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 576 AGAATCTCCTCAAGCTTTTAGCCCAAGTCCGCGTAAAGAACATGTGAAGTCCTTAATCAC 635
Query 701 AGCCGATGCAAGTATGGCTACTGATGAGAGAAGAGAGCTAAAGCCTAAAACACGTACGTT 760
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 636 AGCTGATGCAAGTATGGCTGCTGATGAGAGAAGAGAGCTAAAGCCTAAAACACGTACGTT 695
Query 761 TCATAACTCTGCCCCTTTAGTGAAACAACAGCCAATGATGAACTATGGCATCCACGAGAT 820
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 696 TCATAACGCTGCCCCTTTAGTGAAACAACAGCCAATGATGAACTATGGCATCCACGAGAT 755
Query 821 GAGAGCTGCACCGATGCCTCCAAGAGTGGTTCAAGTCAACGGTCCAGGTCCATCCTTGCA 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 756 GAGAGCTGCACCGATGCCTCCAAGAGTGGTTCAAGTCAACGGTCCAGGTCCATCCTTGCA 815
Query 881 CCAGCTGCCACCAGATTTCTCTGTCAAAGAAACAAGCCCTTTGCTCGGAGGTGGACGGAT 940
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 816 CCAGCTGCCACCAGATTTCTCTGTCAAAGAGACAAGCCCTTTGCTCGGAGGTGGACGGAT 875
Query 941 CGTTGGAGGACGAGTGGTTCGTGGTACAGAGAGGCCAACAAGCGGGACATATGATCTCGT 1000
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 876 CGTTGGAGGACGAGTGGTTCGTGGTACAGAGAAGCCAACAAGCGGCACATATGATCTCGT 935
Query 1001 TGAAGAGATGAAATTTCTCTACGTGAGAGTTGTGAAAGCGCGTGATCTCCCCAACAAAGA 1060
||||||||||| ||| || ||||||||||||||||| |||||||||||||||||||||||
Sbjct 936 TGAAGAGATGAGATTCCTATACGTGAGAGTTGTGAAGGCGCGTGATCTCCCCAACAAAGA 995
Query 1061 CCTTACAGGAAGCCTAGACCCGTATGTCGTAGTAAAAATCGGAAACTTCAAAGGTGTTAC 1120
|||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 996 CCTTACCGGAAGCCTAGACCCGTATGTCGAAGTAAAAATCGGAAACTTCAGAGGTGTTAC 1055
Query 1121 CACACATTTTAACAAGAATACAGATCCCGAGTGGAACCAAGTCTTTGCCTTCGCTAA-AG 1179
||| |||||| |||| ||| || |||| |||||||||||||||||||||||||| || ||
Sbjct 1056 CACGCATTTTGACAAAAATTCAAATCCGGAGTGGAACCAAGTCTTTGCCTTCGC-AAGAG 1114
Query 1180 ATAATCTTCAGTCGAACTTTCTTGAAGTTATGGTCAAGGATAAAGACATTCTCCTTGATG 1239
||||||||||||| ||||||||||||||| |||| ||||||||||||||| |||||||||
Sbjct 1115 ATAATCTTCAGTCAAACTTTCTTGAAGTTGTGGTGAAGGATAAAGACATTGTCCTTGATG 1174
Query 1240 ATTTTGTTGGGATCGTTAAATTCGATCTCCGTGAGGTTCAGTCTCGCGTTCCTCCTGATA 1299
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1175 ATTTTGTTGGGATCGTTAAATTCGATCTCCGTGAGGTTCAGTCTCGCGTTCCTCCGGATA 1234
Query 1300 GTCCTTTAGCTCCCCAGTGGTACAGACTGGAGAACAAGAGAGGCGAGAAGAAGAATTATG 1359
|||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 1235 GTCCTTTAGCTCCCGAGTGGTACAGATTGGAGAACAAGAGAGGTGAGAAGAAGAATTATG 1294
Query 1360 AGATAATGCTTGCTGTGTGGTCTGGAACTCAGGCTGATGAAGCTTTCGGGGATGCGACTT 1419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1295 AGATAATGCTTGCTGTGTGGTCTGGAACTCAGGCTGATGAAGCTTTCGGGGATGCGACTT 1354
Query 1420 TCTCAGACTCATTGGTAGATTCAGACAGCTCCAACATTATATCCGCTAACCTGCGCTCAA 1479
||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1355 TCTCAGATTCATTGGTATCTTCAGACAGCTCCAACATTATATCCGCTAACCTGCGCTCAA 1414
Query 1480 AAGTGTACCATTCGCCTCGGCTATGGTACCTAAGGGTGCAAATATTGGAAGCTCAGGACG 1539
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1415 AAGTGTACCATTCGCCTCGCCTATGGTACCTAAGGGTGCAAATATTGGAGGCTCAGGACG 1474
Query 1540 TCATCATCGTGTCTGACAAATCCCGTGTTCCAGAGGTCTTT-GTGCG-AGTAAAAGTCGG 1597
|||||||||| ||||| ||||||||| ||||||| | |||| ||| | | ||||||||||
Sbjct 1475 TCATCATCGTCTCTGATAAATCCCGTCTTCCAGAAG-CTTTTGTGAGGA-TAAAAGTCGG 1532
Query 1598 TAATCAGATGTTAAGGACTAAATTTCCCCAGAGAAGCAATAATCCAAAATGGGGTGATGA 1657
|||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 1533 TAATCAGATGTTAATGACTAAATTTTCCCAGAGAAGCAATAATCCAAAATGGGGAGATGA 1592
Query 1658 GTTCACGTTTGTAGTCGCGGAGCCGTTTGAGGATAA-CTTGGTCCTCTCCGTGGAAGATC 1716
||||||||||||||||| |||||||||||||| || | |||| |||||||| |||||||
Sbjct 1593 ATTCACGTTTGTAGTCGCAGAGCCGTTTGAGGA-AAGCATGGTTCTCTCCGTCGAAGATC 1651
Query 1717 ACACTGCTCCTAACAGAGACGAGCCAGTAGGAAAAGCTGTGATTTTGATGAATGACATAG 1776
||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||| |
Sbjct 1652 ACACTGCTCCTAACAGAGATGAGCCAGTAGGAAAAGCTGTGATTTCGATGACTGACATTG 1711
Query 1777 AGAAACGTATAGATGATAAACCTTTTCATGACCGATGGGTTCATCTTGAAGACTCCATCT 1836
||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1712 AGAGACGTATAGATGATAAACCTTTTCATGACCGCTGGGTTCATCTCGAAGACTCCATCT 1771
Query 1837 CAGACGCTATGGATGTTGATAAAGCCAAGAAAGTGAAGTTCGCTACTAGGCTCCGGTATA 1896
||||||||||||||| ||||||||| ||||||||||| |||||||| |||||||| ||||
Sbjct 1772 CAGACGCTATGGATGCTGATAAAGCTAAGAAAGTGAAATTCGCTACAAGGCTCCGTTATA 1831
Query 1897 AGGCGGTTCTCGATGGAGGCTACCACGTTTTTGATGAGTCCATGTATAACAGCAGTGATC 1956
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1832 AGGCGGTTCTTGATGGAGGCTACCACGTTTTTGATGAGTCCATGTATAACAGCAGTGATC 1891
Query 1957 TCAGACCTTCGTCGAGAAAGCTCTGGAAACCAGCAATTGGTGTCTTGGAGCTCGGGATAC 2016
||||||||||||| | ||||||||||||| |||| || || |||||||||||||||||||
Sbjct 1892 TCAGACCTTCGTCAAAAAAGCTCTGGAAATCAGCGATCGGAGTCTTGGAGCTCGGGATAC 1951
Query 2017 TTAACGCAAATGTGTTCCATTCGATGAAAACTCGGGAAGGGAAAGGTACTTCGGACACGT 2076
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1952 TTAACGCAAATGTGTTTCATTCGATGAAAACTCGGGATGGGAAAGGTACTTCGGACACAT 2011
Query 2077 ACGTTGTTGCCAAATACGGTCACAAATGGGTTCGGTCACGAACTGTGATCAACAGCATGA 2136
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||
Sbjct 2012 ACGTTGTTGCCAAATACGGTCACAAATGGGTTCGATCACGAACTGTAATCAACACCATGA 2071
Query 2137 ATCCAAAGTACAATGAGCAATACACATGGGAGGTTTTTGATCCTGCAACGGTTTTAACCA 2196
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2072 ATCCAAAGTACAATGAGCAATACACATGGGAGGTTTTTGATCCTGCAACAGTTTTAACCA 2131
Query 2197 TCTGCGTCTTTGACAACGCTCATTTCGCAGCAGGAGATGGCGGAAACAAGAGAGATCAGC 2256
||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 2132 TCTGCGTCTTTGATAACGCTCATTTCACAGCTGGAGATGGCGGAAACAAGAGAGATCAGC 2191
Query 2257 CGATTGGGAAAGTCCGCATTAGACTCTCGACTCTTCAGACGGGCCGTGTGTACACGCATG 2316
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 2192 CGATTGGGAAAGTCCGCATTAGACTCTCGACTCTTCAGACGGGCCGTGTCTACACGCACG 2251
Query 2317 CTTACCCTTTACTTGTTCTACAACCTACTGGTCTTAAGAAAAGAGGAGAGCTTCACTTAG 2376
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 2252 CTTACCCTTTACTTGTTCTACAACCTCCTGGTCTTAAGAAAAGAGGGGAGCTTCACTTAG 2311
Query 2377 CGGTGAGATTCACCTGCACATCGGTCTCCAGTATGCTGATGAAATACACAAAACCTCTCC 2436
|||||||||||||||||||||||||||||| ||||||||| |||||||| | ||||||||
Sbjct 2312 CGGTGAGATTCACCTGCACATCGGTCTCCAATATGCTGATAAAATACACCAGACCTCTCC 2371
Query 2437 TGCCTAAAATGCATTACATACTACCCTTATCCACAAACCAACAGGAAGCTCTTAAGATGC 2496
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||
Sbjct 2372 TGCCTAAAATGCATTACATACTACCCTTATCCACAAACCAACAGGAATCTCTCAAGGCGC 2431
Query 2497 AGGCTATCAACATAATTATTGTTCGTTTAGGCCGGTCCGAGCCACCGCTGAGACGGGAAG 2556
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2432 AGGCTTTCAACATAATTGTTGTTCGTTTAGGCCGGTCCGAGCCACCGCTGAGACGGGAAG 2491
Query 2557 TGGTTGACTATTTGACAGAT-TGGAAAAGTCAGCTGTTCAGCATGAGGAGAAGCAAAGCC 2615
|| |||| |||||||||||| || |||||||||||||||||||||||| |||||||||||
Sbjct 2492 TGATTGAGTATTTGACAGATGTG-AAAAGTCAGCTGTTCAGCATGAGGCGAAGCAAAGCC 2550
Query 2616 AACTTCAATAGGTTCACGACAGTGTTCTCCGGTGCGCTGTCTGTT-TGGAAATGGATGGA 2674
|||||||||||||||||||| |||||||| ||||||||||| | | ||||||||||||||
Sbjct 2551 AACTTCAATAGGTTCACGACGGTGTTCTCGGGTGCGCTGTC-GATCTGGAAATGGATGGA 2609
Query 2675 ACAAGTGTGCACATGGAAGACTCCCGTGACGACGGCTCTGGTGCACGTGCTCTACACTAT 2734
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||
Sbjct 2610 ACAAGTGTGCACATGGAAGACTCCTGTGACGACGGCTCTGGTGCACGTGCTGTACGCTAT 2669
Query 2735 GCTTGTGACGTTCCCGGAGATGATTTTGCCGACTGTGTTTCTGTATATGGCTGTGATTGG 2794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2670 GCTTGTGACGTTCCCGGAGATGATTTTGCCGACTGTGTTTCTGTATATGGCTGTGATTGG 2729
Query 2795 GATGTGGAATTACAGGTTTAAGCCTAGATTTCCTCCTCATATGGACGCCAAACTATCTTA 2854
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 2730 GATGTGGAATTACAGGTTTAAGCCCAGATTTCCTCCTCATATGGACGCCAAACTGTCTTA 2789
Query 2855 TGCAGACAATGTAAATTCTGATGAGCTTGACGAAGAGTTTGATACCTTCCCGACCGTAAG 2914
|||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2790 TGCAGACAATGTGAATGCTGATGAGCTCGACGAAGAGTTTGATACCTTCCCGACCGTAAG 2849
Query 2915 GGCTCCGGACATTGTGAAAATGAGGTACGACCGGCTGAGATCTGTGGCCGGGAAGGTACA 2974
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2850 GGCTCCGGACATTGTGAAAATGAGGTACGACCGGCTGAGAAGTGTGGCCGGGAAGGTACA 2909
Query 2975 GTCGGTGGCTGGAGACATAGCCGCACAAGGAGAGCGAGTGCAAGCGTTGCTGAGCTGGCG 3034
||||||||||||||||||||| ||||| |||||||||||||| ||| |||||||||||||
Sbjct 2910 GTCGGTGGCTGGAGACATAGCGGCACAGGGAGAGCGAGTGCAGGCGCTGCTGAGCTGGCG 2969
Query 3035 TGATCCACGCGCCACCGCAATATTCGTGACGTTCTGTTTCATTATTGCCATGGCTCTCTA 3094
||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||
Sbjct 2970 TGATCCACGCGCCACCGCAATTTTCGTGACATTCTGTTTCATCATTGCCATGGCTCTCTA 3029
Query 3095 CATTACCCCTTTTAAACTTGTCGCTCTGTTATCCGGTTACTACTTCATGCGACATCCAAA 3154
||||||||| |||||||| || ||||| |||| || ||||||||||||||||| || ||
Sbjct 3030 CATTACCCCGTTTAAACTCGTGGCTCTCCTATCGGGATACTACTTCATGCGACACCCTAA 3089
Query 3155 GCTCCGACACCGCATTCCCTCCGCTCCCGTCAACTTTTTCCGGCGACTTCCAGCCATGAC 3214
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 3090 GCTCCGACACCGCATTCCCTCCGCTCCAGTCAACTTTTTCCGGCGACTTCCGGCCATGAC 3149
Query 3215 CGACTCTATGCTGTGAATCTTCTTCTGGATAGAGTAATCAACAAACATGCCATGTATATA 3274
|||||||||||||||||||||||| ||||||||| | |||||||||||| ||||| | |
Sbjct 3150 CGACTCTATGCTGTGAATCTTCTTATGGATAGAGGAGTCAACAAACATGT-ATGTAAAAA 3208
Query 3275 A-CTCTCTTCTTTGAAT 3290
| ||| |||||||||||
Sbjct 3209 AACTCCCTTCTTTGAAT 3225
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 127416754404
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5