BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00710.1
Length=2495
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490499 jgi|Araly1|490499|fgenesh2_kg.6__3633__AT4G00710.1 2985 0.0
> Ahg490499 jgi|Araly1|490499|fgenesh2_kg.6__3633__AT4G00710.1
Length=2362
Score = 2985 bits (1616), Expect = 0.0
Identities = 1839/1942 (95%), Gaps = 33/1942 (2%)
Strand=Plus/Plus
Query 522 TCTAACTAGTCGAGTTGACTCA-GTA-GAGTCGAAAGCTTCTGGGTTTACGAAGAGACAT 579
||||||||||||||||||| | ||| || | |||||||||||||||||||||||||
Sbjct 444 TCTAACTAGTCGAGTTGAC-AAGGTACGA-CCTTCAGCTTCTGGGTTTACGAAGAGACAT 501
Query 580 CTCCTAATTGAAACAAAACCTTTCCTTTCCATTGGGCTGAGAAAAAAGCAAGAGTCTTTG 639
|||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||| |
Sbjct 502 CTCCTAATTGGAACAAAACCTTTGCTTTCCATTGGGCTGA-AAAAAAGCAAGAGTCTTGG 560
Query 640 AATATTTTTTGGAGCGTGGTTTTATTTAGATGGGAGGTCAATGCTCTAGCCTGAGT---T 696
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 561 AATAGTTTTTGGAGCGTGG-TTTATTTAGATGGGAGGTCAATGCTCTAGCCTGAGTCAGT 619
Query 697 GTTGCAGGAACACTTCACACAAGACAGCTGTTCTTGAAGCTCCTGATGTTGATAATGGAG 756
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 GTTGCAGGAACTCTTCACACAAGACAGCTGTTCTTGAAGCTCCTGATGTTGATAATGGAG 679
Query 757 AGAGTAGTGAGATCACTGATGTTCCTAATTTCCGGGAGTATACTTTAGAACAGCTTAAGG 816
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 680 AGAGTAGTGAGATCACTGATGTTCCTAATTTCCGGGAGTACACATTAGAACAGCTTAAGG 739
Query 817 CAGCTACTTCTGGTTTTGCCGTGGAGTATATTGTATCTGAACATGGAGAAAAGGCTCCAA 876
| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 740 CGGCTACTTCTGGTTTTGCTGTGGAGTATATTGTATCTGAGCATGGAGAAAAGGCTCCAA 799
Query 877 ATGTTGTCTATAAAGGGAAATTGGAGAACCAAAAGAAGATTGCTGTCAAGCGTTTTACTA 936
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 800 ATGTTGTCTATAAAGGGAAATTGGAGAATCAAAAGAAGATTGCTGTCAAGCGTTTCACTA 859
Query 937 GAATGGCCTGGCCTGATTCACGACAGTTCTTGGAGGAAGCGAGGTCGGTTGGTCAGCTAC 996
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 860 GAATGGCCTGGCCTGATGCACGACAGTTCTTGGAGGAAGCGAGGTCGGTTGGTCAGCTGC 919
Query 997 GGAGTGAGAGAATGGCCAATTTACTCGGATGTTGCTGCGAAGGTGACGAGAGGTTACTTG 1056
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 920 GGAGTGAGAGAATGGCCAATTTACTCGGGTGTTGCTGCGAAGGTGACGAGAGGTTACTCG 979
Query 1057 TAGCAGAGTTTATGCCTAATGAAACACTAGCCAAACACCTTTTTCACTGGGAAACTCAAC 1116
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 980 TAGCCGAGTTTATGCCTAATGAAACACTAGCCAAACACCTTTTTCACTGGGAAACCCAAC 1039
Query 1117 CTATGAAATGGACTATGAGGCTACGAGTTGTTTTATATCTAGCACAAGCTCTTGAATACT 1176
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1040 CTATGAAATGGACTATGAGGCTGCGGGTTGTTTTATATCTAGCACAAGCTCTTGAATACT 1099
Query 1177 GCACCAGCAAAGGCCGTACTCTTTACCACGACCTCAATGCTTACCGGGTTTTGTTTGATG 1236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1100 GCACCAGCAAAGGCCGTACTCTTTACCACGACCTCAATGCTTACCGGGTTTTGTTTGATG 1159
Query 1237 AGGAATGCAATCCAAGACTATCTACTTTTGGCTTGATGAAGAATAGTCGGGATGGAAAAA 1296
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1160 AGGAATGCAATCCAAGACTTTCTACTTTTGGCTTGATGAAGAATAGTCGGGACGGAAAAA 1219
Query 1297 GTTACAGCACTAATCTTGCTTTCACCCCTCCTGAATATCTACGAACTGGGAGAATTACTC 1356
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1220 GTTACAGCACTAATCTTGCTTTCACCCCTCCCGAATATCTACGAACTGGGAGAATTACTC 1279
Query 1357 CAGAGAGTGTAATATACAGCTTTGGCACTCTTCTGCTTGATCTTCTCAGCGGAAAACATA 1416
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1280 CAGAGAGTGTGATATACAGCTTTGGCACTCTTCTGCTTGATCTTCTCAGCGGAAAACATA 1339
Query 1417 TACCTCCTAGCCATGCCCTTGATCTGATTAGAGACAGAAATCTCCAGACGCTAACTGATT 1476
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1340 TACCTCCTAGCCATGCCCTTGATCTGATTAGAGACAGAAATCTTCAGACACTAACTGATT 1399
Query 1477 CTTGCCTAGATGGGCAGTTTTCTGATAGTGATGGTACAGAGCTAGTACGCCTAGCTTCTC 1536
|||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1400 CTTGCCTAGATGGGCAATTTTCTGATAGTGATGGCACAGAGCTAGTACGCCTGGCTTCTC 1459
Query 1537 GTTGTCTTCAGTATGAAGCTCGTGAGCGGCCAAACACCAAATCTTTAGTGACTGCCTTGA 1596
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1460 GTTGTCTTCAGTATGAAGCTCGTGAGCGGCCAAACACGAAATCTTTGGTGACTGCCTTGA 1519
Query 1597 CACCTCTTCAGAAGGAGACAGAGGTCCTGTCTCATGTTCTAATGGGTCTACCTCACAGTG 1656
|||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 1520 CACCTCTTCAAAAGGACACAGAGGTCCCATCTCATGTTCTAATGGGTCTACCTCACAGTG 1579
Query 1657 GTTCAGTCTCTCCTCTGTCCCCTCTTGGTGAGGCTTGTTCAAGAAGGGACCTGACCGCTA 1716
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1580 GTTCAGTCTCTCCTCTGTCCCCTCTTGGTGAGGCTTGTTCAAGAAGGGACCTGACTGCTA 1639
Query 1717 TGCTTGAGATCCTGGAGAAACTTGGATACAAAGACGACGAGGGTGTCACCAATGAGCTCT 1776
||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1640 TGCTTGAGATCTTGGATAAACTAGGATACAAAGACGACGAGGGTGTCACCAATGAGCTCT 1699
Query 1777 CGTTTCATATGTGGACAGACCAGATGCAAGAGTCTTTGAACTCGAAGAAGAAGGGTGATG 1836
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1700 CGTTTCAAATGTGGACAGACCAGATGCAAGAGTCTTTGAACTCAAAGAAGAAGGGTGATG 1759
Query 1837 TGGCTTTCAGGCAAAAAGACTTTAGAGAGGCCATCGAGTGTTACACACAGTTTATTGATG 1896
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1760 TGGCTTTCAGGCAAAAAGACTTTAGAGAGGCCATTGAGTGTTACACACAGTTTATTGATG 1819
Query 1897 GAGGAATGATCTCTCCAACAGTGTGTGCTCGGCGTAGTCTGTGTTACCTAATGAGTGACA 1956
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1820 GAGGAATGATCTCTCCAACAGTGTGTGCTCGCCGTAGTCTGTGTTACCTAATGAGTGACA 1879
Query 1957 TGCCGAAAGAAGCTTTAGATGATGCAATTCAGGCTCAAGTGATCTCTCCCGTGTGGCATG 2016
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1880 TGCCAAAAGAAGCTTTAGATGATGCAATTCAGGCTCAAGTGATCTCTCCCGTGTGGCATG 1939
Query 2017 TCGCATCATATCTGCAGTCTGCTTCCCTTGGTATCCTGGGAATGGAGAAGGAATCTCAAA 2076
|||| ||||||||||||||||||||||||| | || |||||||||| |||||||||||||
Sbjct 1940 TCGCGTCATATCTGCAGTCTGCTTCCCTTGCTTTCTTGGGAATGGAAAAGGAATCTCAAA 1999
Query 2077 TCGCACTGAAAGAGGGCTCGAACCTTGAAGCAAAGATGAATGGAG-TTCCCCGAGTGAAG 2135
||||||| |||||||||||||||||||||||||||| ||||| || ||||| ||||||||
Sbjct 2000 TCGCACTCAAAGAGGGCTCGAACCTTGAAGCAAAGAGGAATGCAGGTTCCC-GAGTGAAG 2058
Query 2136 TAAGATATATAGCATTTAA-GATTTTTCTTGTTGGGAAAGATGAAAGAACATCTTACCAA 2194
||||||||||||| ||||| ||||| |||| |||||||||||||||||||||||||||||
Sbjct 2059 TAAGATATATAGCGTTTAAAGATTTGTCTT-TTGGGAAAGATGAAAGAACATCTTACCAA 2117
Query 2195 GTAAAAGGGGTATGAATCTTTTGAGCACAATGATGGGAAAACACTCAA-GAGCAATGCAA 2253
||||||||||| ||||||||||||||||| |||||||||||||||||| |||| ||||||
Sbjct 2118 GTAAAAGGGGTTTGAATCTTTTGAGCACATTGATGGGAAAACACTCAAAGAGCGATGCAA 2177
Query 2254 AACTATAGACCCTCTTCTTCTGGTTGTATGAGGTGTTTTGCCCTTCTTGTGCCTCTTTTT 2313
|||||||||||| |||||||| ||| | | |||||||||||||||||
Sbjct 2178 AACTATAGACCCGCTTCTTCT--TTGC-T-----------C--TTCTTGTGCCTCTTTTT 2221
Query 2314 ATGGGCATTGAATTGAAGGAGTCATTTCCTTTATTAGCTTTGAAATCCATTTCCTGAAAC 2373
||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||
Sbjct 2222 ATGGGCATTGAATTGAATGAGTCACTTCCTTTATTGGCTTTGAAATCCATTTCCTGAAAC 2281
Query 2374 TTTATTGTACTAAA-AAAC-CCATTATTGCAGAAACCAAAAGAGGGTTTTGTTTCTTTTG 2431
|||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 2282 TTTATTGTACTAAAGAAAAACCATTATTGCAGAAACCAAAAGAGG-TTTTGTTTCTTTTG 2340
Query 2432 ATCTATAGGTCACACAGACTAA 2453
||| || |||||||||||||||
Sbjct 2341 ATCCATTGGTCACACAGACTAA 2362
Score = 409 bits (221), Expect = 6e-113
Identities = 363/423 (86%), Gaps = 43/423 (10%)
Strand=Plus/Plus
Query 1 ACACCCATTAAAATATTTCATCAACTTGTCGGTAAAATTAAttcttggcttattctatc- 59
||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||
Sbjct 1 ACACCCATTAAAATATTGCATCAACTTGTCGGT-AAATTAATTTTTGGCTTATTCTATCT 59
Query 60 tttctttctctgtcttcttctttcaattt-ttc-AATAACAATAATACAGATGTGTATAC 117
|||||||||||||||| |||||||||||| | ||||| ||| |||||||||||||||
Sbjct 60 TTTCTTTCTCTGTCTTGTTCTTTCAATTTCAACAAATAA-AAT-ATACAGATGTGTATAT 117
Query 118 ATTAGATACACGTATACTAGTA-CTAAACTTCACTGTGTGATCTGATCTAGAGTTTTTAT 176
||||||||||||||||||| || || |||||||||||||||||||||| ||
Sbjct 118 ATTAGATACACGTATACTACTAGCT--ACTTCACTGTGTGATCTGATCT--AG------- 166
Query 177 ACTATCAGAATAAATAATAGTCGACAATTTGGGATTTGTTTATGGTTTACTTCACATGAA 236
|| | || |||| | | |||||||||| ||||||||||||| |||||||||||||||
Sbjct 167 ---AT-A-AA-AAAT-A-A-TCGACAATTTCGGATTTGTTTATGCTTTACTTCACATGAA 217
Query 237 TCACATACGTTCATGTCGATTCCTTTGAGATACT---GTCTCGATTTCGt-ttttttCTC 292
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
Sbjct 218 TCACATACGTTCATGTCGATTCCTTTGAGATACTCTTGTCTCGATTTCGTGTTTTTTTTT 277
Query 293 TTGTTT------AATTTAAAATTATTGTAAAGCACGTGGATTTGCTTGTCTTGGTTTTGT 346
|| ||| |||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 278 TTTTTTTTTTCTAATTTAAAATTATTGTAAC-CACGTGGATTTGCTTGTCCTGGTTTTGT 336
Query 347 TTTC-TCCTTCGACCTCTTTGATGAAATCGAGGAACCTA--CAATTTCTTCGTCGATCCA 403
|||| || | ||| | ||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 337 TTTCCTC-T-CGAGCGCTTTGATGAAATCGAGGAACCTAGTCAATTTCTTCGTGGATCCA 394
Query 404 AAT 406
|||
Sbjct 395 AAT 397
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94044814905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5