BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G00720.1 Length=2206 Score E Sequences producing significant alignments: (Bits) Value Ahg490498 jgi|Araly1|490498|fgenesh2_kg.6__3632__AT4G00720.1 3162 0.0 > Ahg490498 jgi|Araly1|490498|fgenesh2_kg.6__3632__AT4G00720.1 Length=2073 Score = 3162 bits (1712), Expect = 0.0 Identities = 1981/2102 (94%), Gaps = 53/2102 (3%) Strand=Plus/Plus Query 1 ACGAGGCTGGCATGATTGGCTTTGCCCAC------gagagagagagaaagattccacctg 54 ||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1 ACGAGGCTGGCATGATTGGCTTTGCCCACGAGAGAGAGAGAGAGAGAAAGATTCCACCT- 59 Query 55 ggttgggtcgtgaagaaagagaagaagaaaccgaagaagctcgaagaa-ga--acg-a-a 109 ||||||||||| | | || |||||||||||| ||||||||||||| || ||| | | Sbjct 60 GGTTGGGTCGT---G--A-AG-AGAAGAAACCGAGGAAGCTCGAAGAAGGACGACGCACA 112 Query 110 gGAGATTCTTCCTTTCCCCAGATTTTTCGTTTGAAGAAGAA-TCG-A---AAAACTTAGA 164 |||||||||||||| |||||||||||||||||||||||||| | | ||||| ||| Sbjct 113 GGAGATTCTTCCTTCCCCCAGATTTTTCGTTTGAAGAAGAAGAAGAATCCAAAACCCAGA 172 Query 165 TTTTTGGTTTTGCTTTCGGAGTTATTCGAATTTGAAATATCTGAATCTGTTGATT-CATT 223 |||||||||||||||| |||| ||||||||||||||||||||||||||||||||| | || Sbjct 173 TTTTTGGTTTTGCTTTTGGAG-TATTCGAATTTGAAATATCTGAATCTGTTGATTCCCTT 231 Query 224 TATTCTCCGCATGAAGCTGTGTTGGTGAAGTTTTTCGGAGATTTAGGGTTTCTGAGTT-G 282 | |||||| |||||||||||| |||||||| ||||||||||||||||||||||||||| | Sbjct 232 TTTTCTCCACATGAAGCTGTGGTGGTGAAGATTTTCGGAGATTTAGGGTTTCTGAGTTCG 291 Query 283 TTCCTCGTTTGGTTGGTGAATAAAGCGAAGATGAACGTGATGCGTCGTCTCAAGAGCATT 342 ||||| ||||||| | | | |||||||||||||||||||||||||||||||||| Sbjct 292 -TCCTCTTTTGGTT-G-G--T-----GAAGATGAACGTGATGCGTCGTCTCAAGAGCATT 341 Query 343 GCTTCGGGTCGGACCTCCATTTCTTCGGATCCTGGTGGGGACTATGCGTTGAAGAGAGCT 402 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 342 GCTTCGGGTCGGACCTCGATTTCTTCGGATCCTGGTGGGGACTATGCGTTGAAGAGAGCC 401 Query 403 AAGCTGGATCAAGAGAACGACAACTTGTGTGTTGATCCAATGCAGGTTGACCAAAATAGT 462 ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| Sbjct 402 AAGCTGGATCAAGAGAACGACAACTTGTGTGCTGATCCTATGCAGGTTGACCAAAATAGT 461 Query 463 TCTTGTTTTGAGATGAAAGCTGACGTTTTGTCACAAGAAAGTGTTGCTGGAACGTCAAAT 522 |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 462 TCTTGTTTTGAGATGAAAGCTGACATTTTGTCACATGAAAGTGTTGCTGGAACGTCAAAT 521 Query 523 GTGCCTGCTGTATCGGAAAAACCCGTGGATGATCAGCTTCCCGATGTTATGATCGAAATG 582 |||||||||| ||| |||||| |||||||||||||||||||||| ||||||||||| ||| Sbjct 522 GTGCCTGCTGCATCAGAAAAAACCGTGGATGATCAGCTTCCCGAAGTTATGATCGATATG 581 Query 583 AAGATTAGAGACGAGCGAAATGCCAACCGCGAGGATAAGGATATGGAAACAACTGTTGTA 642 | |||||||||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 582 AGGATTAGAGACGAGCGAAATGCCAACCGCGAAGAGAAGGATATGGAAACAACTGTTGTA 641 Query 643 AACGGCAGTGGGACCGAAACGGGACAAGTTATTACGACGACAGTTGGGGGTAGAGATGGA 702 ||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||| Sbjct 642 AACGGCAGTGGGACCGAAACGGGACAAGTTATTACAACCACAGTCGGGGGTAGAGATGGA 701 Query 703 AAGCCAAAGCAGACTATCTCATACATGGCCCAGCGAGTGGTTGGAACCGGCTCATTCGGA 762 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 702 AAGCCAAAGCAGACAATCTCATACATGGCCCAGCGAGTGGTTGGAACCGGCTCATTCGGA 761 Query 763 GTAGTGTTCCAGGCCAAGTGCCTGGAAACGGGTGAACAAGTTGCAATTAAGAAGGTTCTG 822 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 762 GTAGTGTTCCAGGCCAAGTGCTTGGAAACGGGTGAACAAGTTGCAATTAAGAAGGTTCTG 821 Query 823 CAGGATAAAAGATACAAGAACAGAGAACTTCAGATCATGCGTTTGCAAGACCATCCCAAC 882 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 822 CAGGATAAAAGATACAAGAACAGAGAACTTCAGATCATGCGTTTGCAAGACCATCCCAAC 881 Query 883 GTTGTGCGGCTGAGGCATTCTTTCTTTTCAACAACTGACAAGGATGAGCTGTATCTCAAC 942 |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 882 GTTGTGCGACTGAGGCATTCTTTCTTTTCAACAACTGACAAGGATGAGCTATATCTCAAC 941 Query 943 CTTGTCCTTGAGTATGTTCCCGAAACTGTATACAGAGCATCGAAGCACTATACCAAAATG 1002 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 942 CTTGTCCTTGAGTATGTTCCCGAAACTGTATACAGAGCATCTAAGCACTATACCAAAATG 1001 Query 1003 AATCAGCATATGCCAATTATCTTTGTTCAGCTCTATACTTATCAGATTTGCCGTGCGCTG 1062 ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 1002 AATCAGCATATGCCAATTATCTTTGTTCAGCTCTACACATATCAGATTTGCCGTGCGCTG 1061 Query 1063 AACTACTTACATCGCGTGGTTGGGGTGTGTCACCGTGACATTAAGCCACAAAATCTACTG 1122 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1062 AACTACTTACATCGCGTGGTTGGGGTGTGTCACCGTGACATCAAGCCACAAAATCTACTG 1121 Query 1123 GTTAATCCCCAAACTCATCAATTAAAAATATGCGATTTTGGAAGCGCAAAGATGTTGGTA 1182 ||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||| Sbjct 1122 GTTAACCCCCAAACTCATCAACTAAAAATTTGCGATTTTGGAAGCGCAAAGATGTTGGTA 1181 Query 1183 CCCGGTGAACCTAACATATCCTATATATGCTCCCGGTACTACAGGGCCCCAGAACTTATA 1242 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1182 CCCGGTGAACCTAACATATCCTATATATGCTCCCGGTACTACAGGGCCCCAGAACTTATA 1241 Query 1243 TTTGGGGCGACAGAGTATACCAATGCCATTGACATGTGGTCCGGCGGTTGTGTCATGGCA 1302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1242 TTTGGGGCGACAGAGTATACCAATGCCATTGACATGTGGTCCGGCGGTTGTGTCATGGCA 1301 Query 1303 GAGCTTTTACTTGGTCAACCACTGTTTCCCGGGGAAAGTGGCATTGATCAGCTGGTGGAG 1362 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1302 GAGCTTTTACTCGGTCAACCACTGTTTCCCGGGGAAAGTGGCATTGATCAGCTGGTGGAG 1361 Query 1363 ATAATCAAGATTCTTGGGACGCCTACAAGAGAAGAAATACGGTGTATGAATCCGAATTAC 1422 |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 1362 ATAATCAAGATTCTTGGGACACCTACAAGAGAAGAAATACGGTGTATGAATCCCAATTAC 1421 Query 1423 ACAGAGTTCAAGTTTCCTCAAATCAAAGCTCACCCGTGGCACAAGATTTTCCACAAGCGA 1482 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1422 ACGGAGTTCAAGTTTCCTCAAATCAAAGCTCACCCGTGGCACAAGATTTTCCACAAGCGA 1481 Query 1483 ATGCCACCTGAAGCAGTAGACCTCGTCTCAAGACTCCTTCAGTACTCACCAAACCTTCGT 1542 ||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||| Sbjct 1482 ATGCCACCTGAAGCAGTAGACCTTGTCTCGAGACTCCTTCAGTATTCACCAAACCTTCGT 1541 Query 1543 TGCACTGCATTGGAAGCTTGTGCACACCCCTTCTTTGATGACTTACGGGATCCAAATGTT 1602 |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1542 TGCACTGCTTTGGAAGCTTGTGCACACCCCTTCTTTGATGACTTACGGGATCCGAATGTT 1601 Query 1603 TCACTGCCAAATGGAAGAGCACTGCCTCCATTGTTTAACTTCACTGCCCAAGAACTTGCG 1662 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1602 TCACTGCCAAATGGAAGAGCACTACCTCCATTGTTTAACTTCACTGCCCAAGAACTTGCG 1661 Query 1663 GGTGCATCAACAGAGCTGCGACAGCGTCTAATTCCAGCACATTGCCAGGGAACGGGAAGT 1722 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1662 GGTGCATCAACAGAGCTGCGACAGCGTCTAATTCCAGCGCATTGCCAGGGAACGGGAAGT 1721 Query 1723 AGCTCTTAGGATCATTTATAGCGTGTCCAAATCCAGCTTTCTTTCTCTCCCTCTATTTAC 1782 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1722 AGCTCTTAGGATCATTTATAGTGTGTCCAAATCCAGCTTTCTTTCTCTCCCTCTATTTAC 1781 Query 1783 TGCAGTGTGTACATCAATTTTGAACCACTTCTGCTTCCAAGCTTTTGTCGCCGGAGGAGA 1842 ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 1782 TGCAGTGTGTACATCAATTTTGAACCACTTCTGCTTCCAAGCTTT-GTTGCCGGAGGAGA 1840 Query 1843 GAT-TGGAAATCTGTACGCCGGGACCTGA-T-GAGGTGTGAAATAACTGGGGTCATGAAG 1899 | | |||||||||| ||||||||||| || | || ||||||||||||| | ||||| || Sbjct 1841 G-TCTGGAAATCTGCACGCCGGGACCCGAGTTGA--TGTGAAATAACTGTGTTCATGGAG 1897 Query 1900 cttcttcttcttcttctGACTGGCTTTTCTCTCAATTTGCTATCC-TT-GTTATTTTCAC 1957 |||||||||||||| |||| || | |||||||||||||| ||| || ||| ||||||| Sbjct 1898 CTTCTTCTTCTTCT---GACTAGCCTCTCTCTCAATTTGCTCTCCGTTTGTTTTTTTCAC 1954 Query 1958 CTTCACTTTCAtttttttgttttttt-ttCCACAAATCTGACCCCCCTTATATGTTTGGT 2016 |||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||| Sbjct 1955 CTTCACTTTCATTTTTTTGTTTTTTTCTTTCACAAATCTGACCCCC-TTATATGTTTGGT 2013 Query 2017 GTATCATTTTTATGTGTTTGTAATCCATCAAGATCATTTTCCCTTGCCCTAATATTGCAA 2076 ||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||| ||| Sbjct 2014 GTATCATTTTTATATGTTTGTAATCCATCAAGA-CATTT-CCCTTGCCCTAATATCACAA 2071 Query 2077 GC 2078 || Sbjct 2072 GC 2073 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 83036734100 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5