BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00720.1
Length=2206
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490498 jgi|Araly1|490498|fgenesh2_kg.6__3632__AT4G00720.1 3162 0.0
> Ahg490498 jgi|Araly1|490498|fgenesh2_kg.6__3632__AT4G00720.1
Length=2073
Score = 3162 bits (1712), Expect = 0.0
Identities = 1981/2102 (94%), Gaps = 53/2102 (3%)
Strand=Plus/Plus
Query 1 ACGAGGCTGGCATGATTGGCTTTGCCCAC------gagagagagagaaagattccacctg 54
||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ACGAGGCTGGCATGATTGGCTTTGCCCACGAGAGAGAGAGAGAGAGAAAGATTCCACCT- 59
Query 55 ggttgggtcgtgaagaaagagaagaagaaaccgaagaagctcgaagaa-ga--acg-a-a 109
||||||||||| | | || |||||||||||| ||||||||||||| || ||| | |
Sbjct 60 GGTTGGGTCGT---G--A-AG-AGAAGAAACCGAGGAAGCTCGAAGAAGGACGACGCACA 112
Query 110 gGAGATTCTTCCTTTCCCCAGATTTTTCGTTTGAAGAAGAA-TCG-A---AAAACTTAGA 164
|||||||||||||| |||||||||||||||||||||||||| | | ||||| |||
Sbjct 113 GGAGATTCTTCCTTCCCCCAGATTTTTCGTTTGAAGAAGAAGAAGAATCCAAAACCCAGA 172
Query 165 TTTTTGGTTTTGCTTTCGGAGTTATTCGAATTTGAAATATCTGAATCTGTTGATT-CATT 223
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||| | ||
Sbjct 173 TTTTTGGTTTTGCTTTTGGAG-TATTCGAATTTGAAATATCTGAATCTGTTGATTCCCTT 231
Query 224 TATTCTCCGCATGAAGCTGTGTTGGTGAAGTTTTTCGGAGATTTAGGGTTTCTGAGTT-G 282
| |||||| |||||||||||| |||||||| ||||||||||||||||||||||||||| |
Sbjct 232 TTTTCTCCACATGAAGCTGTGGTGGTGAAGATTTTCGGAGATTTAGGGTTTCTGAGTTCG 291
Query 283 TTCCTCGTTTGGTTGGTGAATAAAGCGAAGATGAACGTGATGCGTCGTCTCAAGAGCATT 342
||||| ||||||| | | | ||||||||||||||||||||||||||||||||||
Sbjct 292 -TCCTCTTTTGGTT-G-G--T-----GAAGATGAACGTGATGCGTCGTCTCAAGAGCATT 341
Query 343 GCTTCGGGTCGGACCTCCATTTCTTCGGATCCTGGTGGGGACTATGCGTTGAAGAGAGCT 402
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 342 GCTTCGGGTCGGACCTCGATTTCTTCGGATCCTGGTGGGGACTATGCGTTGAAGAGAGCC 401
Query 403 AAGCTGGATCAAGAGAACGACAACTTGTGTGTTGATCCAATGCAGGTTGACCAAAATAGT 462
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 402 AAGCTGGATCAAGAGAACGACAACTTGTGTGCTGATCCTATGCAGGTTGACCAAAATAGT 461
Query 463 TCTTGTTTTGAGATGAAAGCTGACGTTTTGTCACAAGAAAGTGTTGCTGGAACGTCAAAT 522
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 462 TCTTGTTTTGAGATGAAAGCTGACATTTTGTCACATGAAAGTGTTGCTGGAACGTCAAAT 521
Query 523 GTGCCTGCTGTATCGGAAAAACCCGTGGATGATCAGCTTCCCGATGTTATGATCGAAATG 582
|||||||||| ||| |||||| |||||||||||||||||||||| ||||||||||| |||
Sbjct 522 GTGCCTGCTGCATCAGAAAAAACCGTGGATGATCAGCTTCCCGAAGTTATGATCGATATG 581
Query 583 AAGATTAGAGACGAGCGAAATGCCAACCGCGAGGATAAGGATATGGAAACAACTGTTGTA 642
| |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 582 AGGATTAGAGACGAGCGAAATGCCAACCGCGAAGAGAAGGATATGGAAACAACTGTTGTA 641
Query 643 AACGGCAGTGGGACCGAAACGGGACAAGTTATTACGACGACAGTTGGGGGTAGAGATGGA 702
||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||
Sbjct 642 AACGGCAGTGGGACCGAAACGGGACAAGTTATTACAACCACAGTCGGGGGTAGAGATGGA 701
Query 703 AAGCCAAAGCAGACTATCTCATACATGGCCCAGCGAGTGGTTGGAACCGGCTCATTCGGA 762
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 AAGCCAAAGCAGACAATCTCATACATGGCCCAGCGAGTGGTTGGAACCGGCTCATTCGGA 761
Query 763 GTAGTGTTCCAGGCCAAGTGCCTGGAAACGGGTGAACAAGTTGCAATTAAGAAGGTTCTG 822
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 762 GTAGTGTTCCAGGCCAAGTGCTTGGAAACGGGTGAACAAGTTGCAATTAAGAAGGTTCTG 821
Query 823 CAGGATAAAAGATACAAGAACAGAGAACTTCAGATCATGCGTTTGCAAGACCATCCCAAC 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 CAGGATAAAAGATACAAGAACAGAGAACTTCAGATCATGCGTTTGCAAGACCATCCCAAC 881
Query 883 GTTGTGCGGCTGAGGCATTCTTTCTTTTCAACAACTGACAAGGATGAGCTGTATCTCAAC 942
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 882 GTTGTGCGACTGAGGCATTCTTTCTTTTCAACAACTGACAAGGATGAGCTATATCTCAAC 941
Query 943 CTTGTCCTTGAGTATGTTCCCGAAACTGTATACAGAGCATCGAAGCACTATACCAAAATG 1002
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 942 CTTGTCCTTGAGTATGTTCCCGAAACTGTATACAGAGCATCTAAGCACTATACCAAAATG 1001
Query 1003 AATCAGCATATGCCAATTATCTTTGTTCAGCTCTATACTTATCAGATTTGCCGTGCGCTG 1062
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1002 AATCAGCATATGCCAATTATCTTTGTTCAGCTCTACACATATCAGATTTGCCGTGCGCTG 1061
Query 1063 AACTACTTACATCGCGTGGTTGGGGTGTGTCACCGTGACATTAAGCCACAAAATCTACTG 1122
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1062 AACTACTTACATCGCGTGGTTGGGGTGTGTCACCGTGACATCAAGCCACAAAATCTACTG 1121
Query 1123 GTTAATCCCCAAACTCATCAATTAAAAATATGCGATTTTGGAAGCGCAAAGATGTTGGTA 1182
||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 1122 GTTAACCCCCAAACTCATCAACTAAAAATTTGCGATTTTGGAAGCGCAAAGATGTTGGTA 1181
Query 1183 CCCGGTGAACCTAACATATCCTATATATGCTCCCGGTACTACAGGGCCCCAGAACTTATA 1242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182 CCCGGTGAACCTAACATATCCTATATATGCTCCCGGTACTACAGGGCCCCAGAACTTATA 1241
Query 1243 TTTGGGGCGACAGAGTATACCAATGCCATTGACATGTGGTCCGGCGGTTGTGTCATGGCA 1302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1242 TTTGGGGCGACAGAGTATACCAATGCCATTGACATGTGGTCCGGCGGTTGTGTCATGGCA 1301
Query 1303 GAGCTTTTACTTGGTCAACCACTGTTTCCCGGGGAAAGTGGCATTGATCAGCTGGTGGAG 1362
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1302 GAGCTTTTACTCGGTCAACCACTGTTTCCCGGGGAAAGTGGCATTGATCAGCTGGTGGAG 1361
Query 1363 ATAATCAAGATTCTTGGGACGCCTACAAGAGAAGAAATACGGTGTATGAATCCGAATTAC 1422
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1362 ATAATCAAGATTCTTGGGACACCTACAAGAGAAGAAATACGGTGTATGAATCCCAATTAC 1421
Query 1423 ACAGAGTTCAAGTTTCCTCAAATCAAAGCTCACCCGTGGCACAAGATTTTCCACAAGCGA 1482
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1422 ACGGAGTTCAAGTTTCCTCAAATCAAAGCTCACCCGTGGCACAAGATTTTCCACAAGCGA 1481
Query 1483 ATGCCACCTGAAGCAGTAGACCTCGTCTCAAGACTCCTTCAGTACTCACCAAACCTTCGT 1542
||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||
Sbjct 1482 ATGCCACCTGAAGCAGTAGACCTTGTCTCGAGACTCCTTCAGTATTCACCAAACCTTCGT 1541
Query 1543 TGCACTGCATTGGAAGCTTGTGCACACCCCTTCTTTGATGACTTACGGGATCCAAATGTT 1602
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1542 TGCACTGCTTTGGAAGCTTGTGCACACCCCTTCTTTGATGACTTACGGGATCCGAATGTT 1601
Query 1603 TCACTGCCAAATGGAAGAGCACTGCCTCCATTGTTTAACTTCACTGCCCAAGAACTTGCG 1662
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1602 TCACTGCCAAATGGAAGAGCACTACCTCCATTGTTTAACTTCACTGCCCAAGAACTTGCG 1661
Query 1663 GGTGCATCAACAGAGCTGCGACAGCGTCTAATTCCAGCACATTGCCAGGGAACGGGAAGT 1722
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1662 GGTGCATCAACAGAGCTGCGACAGCGTCTAATTCCAGCGCATTGCCAGGGAACGGGAAGT 1721
Query 1723 AGCTCTTAGGATCATTTATAGCGTGTCCAAATCCAGCTTTCTTTCTCTCCCTCTATTTAC 1782
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1722 AGCTCTTAGGATCATTTATAGTGTGTCCAAATCCAGCTTTCTTTCTCTCCCTCTATTTAC 1781
Query 1783 TGCAGTGTGTACATCAATTTTGAACCACTTCTGCTTCCAAGCTTTTGTCGCCGGAGGAGA 1842
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1782 TGCAGTGTGTACATCAATTTTGAACCACTTCTGCTTCCAAGCTTT-GTTGCCGGAGGAGA 1840
Query 1843 GAT-TGGAAATCTGTACGCCGGGACCTGA-T-GAGGTGTGAAATAACTGGGGTCATGAAG 1899
| | |||||||||| ||||||||||| || | || ||||||||||||| | ||||| ||
Sbjct 1841 G-TCTGGAAATCTGCACGCCGGGACCCGAGTTGA--TGTGAAATAACTGTGTTCATGGAG 1897
Query 1900 cttcttcttcttcttctGACTGGCTTTTCTCTCAATTTGCTATCC-TT-GTTATTTTCAC 1957
|||||||||||||| |||| || | |||||||||||||| ||| || ||| |||||||
Sbjct 1898 CTTCTTCTTCTTCT---GACTAGCCTCTCTCTCAATTTGCTCTCCGTTTGTTTTTTTCAC 1954
Query 1958 CTTCACTTTCAtttttttgttttttt-ttCCACAAATCTGACCCCCCTTATATGTTTGGT 2016
|||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||
Sbjct 1955 CTTCACTTTCATTTTTTTGTTTTTTTCTTTCACAAATCTGACCCCC-TTATATGTTTGGT 2013
Query 2017 GTATCATTTTTATGTGTTTGTAATCCATCAAGATCATTTTCCCTTGCCCTAATATTGCAA 2076
||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||| |||
Sbjct 2014 GTATCATTTTTATATGTTTGTAATCCATCAAGA-CATTT-CCCTTGCCCTAATATCACAA 2071
Query 2077 GC 2078
||
Sbjct 2072 GC 2073
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83036734100
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5