BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00753.1
Length=670
Score E
Sequences producing significant alignments: (Bits) Value
Ahg355743 jgi|Araly1|355743|fgenesh1_pg.C_scaffold_7002916 719 0.0
Ahg947719 jgi|Araly1|947719|scaffold_703948.1 191 6e-48
> Ahg355743 jgi|Araly1|355743|fgenesh1_pg.C_scaffold_7002916
Length=570
Score = 719 bits (389), Expect = 0.0
Identities = 511/568 (90%), Gaps = 15/568 (3%)
Strand=Plus/Plus
Query 109 ATGGAGAGTGTTCTCAAATCAGTCATCGTCCCATGCCGAAACGCAAAGTTAGGTTGCACT 168
|||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGAGAGTGTTCTCAGATCAGTCATTGTCCCATGCCGAAATGCAAAGTTAGGTTGCACT 60
Query 169 AAGAATGTTCCTTATGGGAGAGACTCAAGTCATGAGAAGGAATATTGCAGTTTCTCTCTA 228
||||| ||||||||||||||||||||| |||||||||| |||||||||| |||||||||
Sbjct 61 GAGAATATTCCTTATGGGAGAGACTCAAATCATGAGAAGAAATATTGCAGATTCTCTCTA 120
Query 229 TGTTCTTGCCCTGAAATCAAAGAATGCAAATACACTGGCTTATACAA--AG--------- 277
||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 121 TGTTCTTGCCCTGAAATCAAAGAATGCAATTACACTGGCTTATACAATGAGATCTTATTC 180
Query 278 -A-GATC-A-TATCCCACCCTTTAAAACCCGATTGTTTTTTCACCTTTGGTGAACCGAGG 333
| ||| | ||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 181 CACTATCTAGTATCCCACCTTTTAAAGCCCGATTGTTTTTTCACCTTTGGTGAACCGAGG 240
Query 334 GATGTGCGAATGGCGATAAACGATAAGTCTTTGGTTCTTATAACGCTTACAAAGACTTTA 393
||||||| |||||||||||||||||| |||||||||||| |||||| |||||||||||
Sbjct 241 AATGTGCGGATGGCGATAAACGATAAGAATTTGGTTCTTATGACGCTTCCAAAGACTTTA 300
Query 394 TTGTTCGTTGTGCAATGTTTTAGAGAGCCAAACGGTGTTTATGTGGCTGTAAATTGTATT 453
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||| || ||
Sbjct 301 TTGTTCGTTGTGCAATGTTTTAGAGAGCCAAATGGTGTTTATGTGGCTTTAAATAGTCTT 360
Query 454 GCACCATTGGCTCCTGAAGTGGAGAAGTTCTCATATCGAATCTCTTACTCGTTTGATGGA 513
|||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 361 GCACCATTGGGTCCAGAAGTGGAGAAGTTCTCATATCGAATCTCTTACTATTTTGATGGA 420
Query 514 CGCACTTGTTGTCACGAATCGCCGGAGATGAAGAGAATTCTTGAAGTGAGTTTTGAAACC 573
| |||||| ||||| ||| ||||||||||||||| |||||||||||||||| | |||||
Sbjct 421 GGTACTTGTAGTCACAAATTGCCGGAGATGAAGAGGATTCTTGAAGTGAGTTATCAAACC 480
Query 574 CCTAAAGATAAAAATGTCATGTTTGTTCCTAATAGTTTATTACGTGGTGAAGTGTTGGAG 633
||| ||||||||||| ||||||||||| |||| |||||||| |||||||||||||||||
Sbjct 481 CCTCAAGATAAAAATTTCATGTTTGTTTCTAACAGTTTATTGTGTGGTGAAGTGTTGGAG 540
Query 634 ATGGAGCTTTGTATATCGCAAGTTAAAT 661
|||||||||||||||||| || ||||||
Sbjct 541 ATGGAGCTTTGTATATCGGAAATTAAAT 568
> Ahg947719 jgi|Araly1|947719|scaffold_703948.1
Length=324
Score = 191 bits (103), Expect = 6e-48
Identities = 121/129 (94%), Gaps = 3/129 (2%)
Strand=Plus/Plus
Query 5 TTCAGTGTGATAATGGACATGTAGCTTGCGGTTTTTGCTGGCTCAAACTCGG-AAAGAAA 63
||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||| |||
Sbjct 154 TTCAGTGTGATAATGGACATGTAGCTTGCCGTTTTTGCTGGCCCAAACTCGGGAAA-AAA 212
Query 64 TGTCCTGCATGTGCTTTACCCATTGGAAACAAACGTTGCAAAGCAATGGAGAGTGTTCTC 123
||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 213 TGTCCTGCATGTGTTTTACCCATTGGTAACAAACGTTGCATAGCAATGGAGAGTGTTCTC 272
Query 124 AAATC-AGT 131
||||| |||
Sbjct 273 AAATCCAGT 281
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24589281465
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5