BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G00753.1 Length=670 Score E Sequences producing significant alignments: (Bits) Value Ahg355743 jgi|Araly1|355743|fgenesh1_pg.C_scaffold_7002916 719 0.0 Ahg947719 jgi|Araly1|947719|scaffold_703948.1 191 6e-48 > Ahg355743 jgi|Araly1|355743|fgenesh1_pg.C_scaffold_7002916 Length=570 Score = 719 bits (389), Expect = 0.0 Identities = 511/568 (90%), Gaps = 15/568 (3%) Strand=Plus/Plus Query 109 ATGGAGAGTGTTCTCAAATCAGTCATCGTCCCATGCCGAAACGCAAAGTTAGGTTGCACT 168 |||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||| Sbjct 1 ATGGAGAGTGTTCTCAGATCAGTCATTGTCCCATGCCGAAATGCAAAGTTAGGTTGCACT 60 Query 169 AAGAATGTTCCTTATGGGAGAGACTCAAGTCATGAGAAGGAATATTGCAGTTTCTCTCTA 228 ||||| ||||||||||||||||||||| |||||||||| |||||||||| ||||||||| Sbjct 61 GAGAATATTCCTTATGGGAGAGACTCAAATCATGAGAAGAAATATTGCAGATTCTCTCTA 120 Query 229 TGTTCTTGCCCTGAAATCAAAGAATGCAAATACACTGGCTTATACAA--AG--------- 277 ||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 121 TGTTCTTGCCCTGAAATCAAAGAATGCAATTACACTGGCTTATACAATGAGATCTTATTC 180 Query 278 -A-GATC-A-TATCCCACCCTTTAAAACCCGATTGTTTTTTCACCTTTGGTGAACCGAGG 333 | ||| | ||||||||| |||||| ||||||||||||||||||||||||||||||||| Sbjct 181 CACTATCTAGTATCCCACCTTTTAAAGCCCGATTGTTTTTTCACCTTTGGTGAACCGAGG 240 Query 334 GATGTGCGAATGGCGATAAACGATAAGTCTTTGGTTCTTATAACGCTTACAAAGACTTTA 393 ||||||| |||||||||||||||||| |||||||||||| |||||| ||||||||||| Sbjct 241 AATGTGCGGATGGCGATAAACGATAAGAATTTGGTTCTTATGACGCTTCCAAAGACTTTA 300 Query 394 TTGTTCGTTGTGCAATGTTTTAGAGAGCCAAACGGTGTTTATGTGGCTGTAAATTGTATT 453 |||||||||||||||||||||||||||||||| ||||||||||||||| ||||| || || Sbjct 301 TTGTTCGTTGTGCAATGTTTTAGAGAGCCAAATGGTGTTTATGTGGCTTTAAATAGTCTT 360 Query 454 GCACCATTGGCTCCTGAAGTGGAGAAGTTCTCATATCGAATCTCTTACTCGTTTGATGGA 513 |||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||| Sbjct 361 GCACCATTGGGTCCAGAAGTGGAGAAGTTCTCATATCGAATCTCTTACTATTTTGATGGA 420 Query 514 CGCACTTGTTGTCACGAATCGCCGGAGATGAAGAGAATTCTTGAAGTGAGTTTTGAAACC 573 | |||||| ||||| ||| ||||||||||||||| |||||||||||||||| | ||||| Sbjct 421 GGTACTTGTAGTCACAAATTGCCGGAGATGAAGAGGATTCTTGAAGTGAGTTATCAAACC 480 Query 574 CCTAAAGATAAAAATGTCATGTTTGTTCCTAATAGTTTATTACGTGGTGAAGTGTTGGAG 633 ||| ||||||||||| ||||||||||| |||| |||||||| ||||||||||||||||| Sbjct 481 CCTCAAGATAAAAATTTCATGTTTGTTTCTAACAGTTTATTGTGTGGTGAAGTGTTGGAG 540 Query 634 ATGGAGCTTTGTATATCGCAAGTTAAAT 661 |||||||||||||||||| || |||||| Sbjct 541 ATGGAGCTTTGTATATCGGAAATTAAAT 568 > Ahg947719 jgi|Araly1|947719|scaffold_703948.1 Length=324 Score = 191 bits (103), Expect = 6e-48 Identities = 121/129 (94%), Gaps = 3/129 (2%) Strand=Plus/Plus Query 5 TTCAGTGTGATAATGGACATGTAGCTTGCGGTTTTTGCTGGCTCAAACTCGG-AAAGAAA 63 ||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||| ||| Sbjct 154 TTCAGTGTGATAATGGACATGTAGCTTGCCGTTTTTGCTGGCCCAAACTCGGGAAA-AAA 212 Query 64 TGTCCTGCATGTGCTTTACCCATTGGAAACAAACGTTGCAAAGCAATGGAGAGTGTTCTC 123 ||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||| Sbjct 213 TGTCCTGCATGTGTTTTACCCATTGGTAACAAACGTTGCATAGCAATGGAGAGTGTTCTC 272 Query 124 AAATC-AGT 131 ||||| ||| Sbjct 273 AAATCCAGT 281 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24589281465 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5