BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00760.1
Length=3285
Score E
Sequences producing significant alignments: (Bits) Value
Ahg895945 jgi|Araly1|895945|Al_scaffold_0006_3941 1526 0.0
Ahg490489 jgi|Araly1|490489|fgenesh2_kg.6__3623__AT4G00770.1 880 0.0
> Ahg895945 jgi|Araly1|895945|Al_scaffold_0006_3941
Length=1110
Score = 1526 bits (826), Expect = 0.0
Identities = 990/1065 (93%), Gaps = 28/1065 (3%)
Strand=Plus/Plus
Query 2027 AGACAGCGATGCGACATGTCTGGCGAATCTGTCAGAGATGATACGCAAATGCGGATATAA 2086
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 AGACAGCGATGCAACATGTCTGGCGAATCTGTCAGAGATGATACGCAAATGCGGATATAG 116
Query 2087 AGTTGTGGCTACTACAAGAGCTGATGATTTGCCGCTTATCATCAATAACAAAGATAAAAA 2146
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 117 AGTTGTGGCTACTACAAGAGCTGAGGATTTGCCGCTTATCATCAATAACAAAGATAAAAA 176
Query 2147 GATTGATCTTGTACTGGCAGAGTTCCGCTTGATTGAGATGAACAAGTATGAACTTCTTGA 2206
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 177 GATTGATCTTGTACTGGCAGATTTCCGCTTGATTGAGATGAACAAGTATGAACTTCTTGA 236
Query 2207 GAAAATCAGGTCGATTTGTGAGATTCCGGTTGTTGTTTCGGGTGCACATGTCAAAGATGC 2266
||||||||||| ||||||||||||||||||||||||||||| |||| |||| ||||||||
Sbjct 237 GAAAATCAGGTTGATTTGTGAGATTCCGGTTGTTGTTTCGGATGCATATGTGAAAGATGC 296
Query 2267 CATTGTAGAATGTCTGTGCAGAGGTGCCAAATTGTGTCTGGAGAAGCCGCTCATGGAGAA 2326
||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||
Sbjct 297 CATTGTAGAATGTCTGTGCAGAGGTGCCAAATTGTGTCTGGAGAAGCCGTTTAAGGAGAA 356
Query 2327 TGACTTCAAAA-TTCTGTGGCAGTTTACAGTCAGTAGACAGCGAAACTTTCGTAGTCAAA 2385
| |||| |||| |||||||||||||||||||||| ||||||||| |||||| ||||||||
Sbjct 357 TCACTT-AAAACTTCTGTGGCAGTTTACAGTCAGGAGACAGCGAGACTTTCTTAGTCAAA 415
Query 2386 TTGACATCAACCCACCTGAGAAAAATCATTCAATCACCCACACTCAATCTCTTGGAGCTG 2445
|||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||| ||
Sbjct 416 TTGACATCAACCCACCTGAGAAAAATTATTCAATCACCAACAATCAATCTCTTGGAGATG 475
Query 2446 AGCTTAAGAAAAATAACAATAACAGCGAAGTTGAAACAGAAGATCTTGATAAGTACAAAG 2505
||||||||||||||||| | ||||||||||||||||||||||||||| |||||
Sbjct 476 AGCTTAAGAAAAATAAC-------G--AAGTTGAAACAGAAGATCTTGATAAGTTCAAAG 526
Query 2506 ATGAACTCGGACAAGGTAACAAAAGAAAGGAAAGAGCGGATACAGATACTGGAGAACATA 2565
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 527 ATGAACTCGGACAAGGTAACAAAAGAAAGGAAAGAGCGGATAAAGATACTGGAGAACATA 586
Query 2566 CAGAGAAGAATAATGGCTCTGATTTGGGAGACCAAAAGAAGCCAAAACTTCTTTTTGCAG 2625
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 587 CAGAGAAGAATAATGGCTCTGATTTGGGAGACCAAAAGAAGCCAAAACTTATTTCTGCAG 646
Query 2626 ATGACCT-ACAAAACGAAACTTTAGAAGCTGTCCCAAATATAGAAGAAGCCAACAATGAA 2684
||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 647 ATG-CCTTACAAACCGAAACTTTAGAAGCTGTCCCAAATATAGAAGAAGCCAACAGTGAA 705
Query 2685 AGAAAGGCACCAACAGAGATAAAGAAGAATGGAGAAAGTAGTGAGAAGAAGAGCCCAGAA 2744
||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 706 AGAAAGGAACCAGCAGAGATAAAGAAGAATGGAGAAGGTAGTGAGAAGAAGAGCCCAGAA 765
Query 2745 CTGGTTTGTATGGAGGAGGAACTTCAAAAGTGGTCAGCTGAATCATTTATTGATTTAACT 2804
||||||||||||||||||||||||||||| ||||| || || |||| ||||||||||||
Sbjct 766 CTGGTTTGTATGGAGGAGGAACTTCAAAATTGGTCCTCTCAACCATTGATTGATTTAACT 825
Query 2805 GCTTCTGTGGAAAATGAAT-C-----CCAAGA----C--CCACTGGAGAGCGTTGGGGAT 2852
||||||||||||||||||| | |||||| | || |||||||| ||||||
Sbjct 826 GCTTCTGTGGAAAATGAATTCGAAGACCAAGATTTTCTGCCTTTGGAGAGCAATGGGGAG 885
Query 2853 TCTGTGGGACCTCATGAGATTCCATTGAGTCCGCCAGAGTCCTCAAACAATAATGTTGCT 2912
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 886 TCTGTGGGACCTCATGAGATTCCATTGAGTCCGCAAGAGTCCTCAAACAAGAATGTTGCT 945
Query 2913 GCTCAGCTACAAATGCCGACACATGAAGCATTAGATGAAGAAGTGATGCAGGATGGACTC 2972
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 946 GCTCAGCAACAAATGCCGACACATGAAGCATTAGATGAAGAAGTGATGCAGGATGGAATC 1005
Query 2973 AGCCTCTCTGACCTCGAAGTTGATCTGCAGGAGG-G--ACATGGCTCAAATAAGGAGCTT 3029
|||||||||||||||||| |||||| |||||||| | ||| ||||||||||||||||||
Sbjct 1006 AGCCTCTCTGACCTCGAATTTGATCCGCAGGAGGAGGGACAGGGCTCAAATAAGGAGCTT 1065
Query 3030 TTCGATAAGATATTCACCGATCTCGCCAAAGAGCTTAAACCTTAA 3074
||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1066 TTCGATAAGATCTTCACCGATCTCGCCAAAGAGCTTAAACCTTAA 1110
> Ahg490489 jgi|Araly1|490489|fgenesh2_kg.6__3623__AT4G00770.1
Length=1613
Score = 880 bits (476), Expect = 0.0
Identities = 665/751 (89%), Gaps = 34/751 (5%)
Strand=Plus/Minus
Query 311 TTTAGAGGTCAATATACATTGTATTATTCGTTTGCTTCATTCTTACAAAAGTAGAGCTaa 370
|||| |||| ||| |||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 1475 TTTATAGGTTAATTTACATTGTGTTATTCGTTTGCTTCCTTCTTACAAAAGTAGAGCT-- 1418
Query 371 aaaaaCCTGAGCTTTTAAGTCAAAGCCTTATTCAAAAATGTTTTTGCTTTCTAATTTCTA 430
||||||||||| | ||||||||||||| |||||| || || ||||||
Sbjct 1417 -AAAACCTGAGC-------T-------TTATTCAAAAATG-TTTTGCCTTGTACTTTCTA 1374
Query 431 AAGCTTAAGCATTGATGTTACTGTTTTGTGATGTTCAGGTGGACTGGAATCAGTTTTGGT 490
||||||||||||||||||| ||| |||| |||||||||||||||||||||||||| ||||
Sbjct 1373 AAGCTTAAGCATTGATGTTTCTG-TTTGCGATGTTCAGGTGGACTGGAATCAGTTCTGGT 1315
Query 491 AGAGAGCGTTGTTAAAGTTTCGTCCATTAACAGGCTGAAGAGTTCTTCCTCAATCTGTGT 550
|||||| ||||| ||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 1314 --AGAGCGCAGTTAACGTTTCTTCCATTAACAGGCTGAAGAGTCCTTCCTCAATCTGTGT 1257
Query 551 AACCACCACTTCGTGCTCCTCCTCTATCTGTTTCTCATTCCAGTCTCGTCTTTCGATTTC 610
||||||||| ||| |||||| | | |||||||||||||||| |||||||||||||||||
Sbjct 1256 AACCACCACATCGCCCTCCTCGTTTCTCTGTTTCTCATTCCAATCTCGTCTTTCGATTTC 1197
Query 611 TCTAGCACATGCTTGTCTCCTCTGCTC-ACTTGTTCCGCGTTCAAGCTCTGATTCTCTCT 669
| || |||||||||||||||||||| | || ||||||||||||||||||||||||| | |
Sbjct 1196 TTTAACACATGCTTGTCTCCTCTGCCCAAC-TGTTCCGCGTTCAAGCTCTGATTCTTTAT 1138
Query 670 TTCCCTGCAACCATCCTTTTGCCT-CGCATACCAATTGGTTCTCAAAGTGTTGAGTTTCG 728
||| ||||||||||||||||||| ||| |||||||||| || ||||||||||||||||
Sbjct 1137 ATCCATGCAACCATCCTTTTGCCTCCGC-CACCAATTGGTCCTTAAAGTGTTGAGTTTCG 1079
Query 729 TGGAATGAGTTTGTCCTTTGCATCAATTCATCTCTGAAATAGTCCATTATCAGATGTTCT 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 TGGAATGAGTTTGTCCTTTGCATCAATTCATCTCTGAAATAGTCCATTATCAGATGTTCT 1019
Query 789 TCGTGGATCCAAATGGCGTGTCTTTCTTTGACTCGGTTCCATAGCTGTGCTGCCTTCTCT 848
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1018 TCGTGGATCCAAATGGCATGTCTTTCTTTGACCCGGTTCCATAGCTGTGCTGCCTTCTCT 959
Query 849 TCAACctcatcattgtattcatcttcactctctctatcaacagtatcacaattctcatca 908
|||||||||||| | |||||||||| |||| | |||||||||||||||||||||||||
Sbjct 958 TCAACCTCATCAGCATCTTCATCTTCAGTCTCGCCATCAACAGTATCACAATTCTCATCA 899
Query 909 tcatcat-A-C-T--TGGT--AT-C-TGTCTCTTGTCCTCCTTCCATGCAAGATGCTTCA 959
||||||| | | | | | || | |||||||||||||||||||||||||||| | |||
Sbjct 898 TCATCATCATCATCATATTTGATACATGTCTCTTGTCCTCCTTCCATGCAAGATTCATCA 839
Query 960 TCCATTGAGCCCCATTCATCCAAATTGAAAGGACTAATGTTGGCCAAAGACTCAAACCGC 1019
|||||||| |||||||| || |||||||||||||||||||||||||| ||||||||||||
Sbjct 838 TCCATTGATCCCCATTCGTCTAAATTGAAAGGACTAATGTTGGCCAACGACTCAAACCGC 779
Query 1020 TGAATCGTTTGCATGAGCTTTTGTTTGGTTC 1050
|||||||||||||| ||||||| ||||||||
Sbjct 778 TGAATCGTTTGCATAAGCTTTTCTTTGGTTC 748
Score = 503 bits (272), Expect = 4e-141
Identities = 324/349 (93%), Gaps = 3/349 (1%)
Strand=Plus/Minus
Query 1312 GCAGTGTCCTTAGACG-AGTGCCATCGCACGATGTCTTTGACTCGAATAACGGTGATGCT 1370
|||| ||||||||||| | | ||| ||||||||||||||||| |||| || |||||||||
Sbjct 363 GCAG-GTCCTTAGACGAACT-CCACCGCACGATGTCTTTGACCCGAACAATGGTGATGCT 306
Query 1371 TGCTTGGTTTTCTGCTTTGTTCTTGGTTGCTAACCGCCGAGAAAGGCTCCTTGGTAAGAT 1430
||||||||||| |||||||||||||| || ||| |||||||| |||||||||||||||||
Sbjct 305 TGCTTGGTTTTTTGCTTTGTTCTTGGGTGTTAATCGCCGAGAGAGGCTCCTTGGTAAGAT 246
Query 1431 CCCCGATGGAGCGGATTTGATGGTGTTGGAATGGAGGTTCTTGATGGCGTTAATCACAGC 1490
|||||||||||||||||||| || ||||||| ||||| |||||| |||||||||||||||
Sbjct 245 CCCCGATGGAGCGGATTTGACGGCGTTGGAACGGAGGCTCTTGACGGCGTTAATCACAGC 186
Query 1491 CTGCAATGCATTGGATTGTTTCCTCTTTGGTATCATTGGGAAAGGGTTGAGAGGATGCCG 1550
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct 185 CTGCAATGCATTGGATTGTTTCCTCTTTGGTATCATTTGGAAATGGTTGAGAGGAGGCCG 126
Query 1551 TCTGGGAATCGATTTGAACCCGTTTGAGGAACATGAGTTGGAATCTTCCAAGAGACAGTC 1610
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 125 TCTAGGAATCGATTTGAACCCGTTTGAGGAACAGGAGTTGGAATCTTCCAAGAGACAGTC 66
Query 1611 TTTGAGCATTCTCGACCTTAGCTCCATCCTGAAACACTCTTTGGCTCAG 1659
|||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 65 TTTGAGCATTCTCGGCCTTAGTTCCATCCTGAAACACTCTTTGGCTCAG 17
Score = 219 bits (118), Expect = 1e-55
Identities = 164/183 (90%), Gaps = 15/183 (8%)
Strand=Plus/Minus
Query 1151 CTTTCCACATTGTCAAGGCATTGACTGAAAGAAGAGTCTGATGTTTCGTCATATTCCTCA 1210
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 748 CTTTCCACATTGTCAAGGCATTGACTGAAAGAAGAGTCTGATGCTTCGTCATATTCCTCA 689
Query 1211 TGTTGAATCTCAAACACTGAGACAGGGCTGTTGTGCTCCTTTTCACACTGT----CC-C- 1264
|||||||||||||||||||||||||||||||| |||||||||||||||||| || |
Sbjct 688 TGTTGAATCTCAAACACTGAGACAGGGCTGTTTTGCTCCTTTTCACACTGTAAGTCCTCC 629
Query 1265 --A---C----TTCAGTGTCGGCTAGTATTACTGCTGTGCAAGAATCTTCGCCGACGCAG 1315
| | |||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 628 TCAGGTCCCACTTCAGTGTCGGCGACTATTACTGCTGTGCAAGAATCTTCGCCGACGCAG 569
Query 1316 TGT 1318
|||
Sbjct 568 TGT 566
Score = 102 bits (55), Expect = 2e-20
Identities = 64/68 (94%), Gaps = 2/68 (3%)
Strand=Plus/Minus
Query 83 ATAGGCTTTGATTTAGGGATTTTAATTTCAATGGCTGCGATCGCGAATCCACGCTT-GCT 141
|||||||||||||||||| |||||||||||||||||||||||||||||| |||||| | |
Sbjct 1610 ATAGGCTTTGATTTAGGGTTTTTAATTTCAATGGCTGCGATCGCGAATCTACGCTTAG-T 1552
Query 142 GCTTAATT 149
||||||||
Sbjct 1551 GCTTAATT 1544
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 123991572834
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5