BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00770.1
Length=1788
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490489 jgi|Araly1|490489|fgenesh2_kg.6__3623__AT4G00770.1 1973 0.0
> Ahg490489 jgi|Araly1|490489|fgenesh2_kg.6__3623__AT4G00770.1
Length=1613
Score = 1973 bits (1068), Expect = 0.0
Identities = 1364/1500 (91%), Gaps = 47/1500 (3%)
Strand=Plus/Plus
Query 1 AAGTTCAGCTTCGTACCTGAGCCAAAGAGTGTTTCAGGATGGAGCTAAGGTCGAGAATGC 60
|||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 1 AAGTTCAGCTGCGTACCTGAGCCAAAGAGTGTTTCAGGATGGAACTAAGGCCGAGAATGC 60
Query 61 TCAAAGACTGTCTCTTGGAAGATTCCAACTCATGTTCCTCAAACGGGTTCAAATCGATTC 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 61 TCAAAGACTGTCTCTTGGAAGATTCCAACTCCTGTTCCTCAAACGGGTTCAAATCGATTC 120
Query 121 CCAGACGGCATCCTCTCAACCCTTTCCCAATGATACCAAAGAGGAAACAATCCAATGCAT 180
| ||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 121 CTAGACGGCCTCCTCTCAACCATTTCCAAATGATACCAAAGAGGAAACAATCCAATGCAT 180
Query 181 TGCAGGCTGTGATTAACGCCATCAAGAACCTCCATTCCAACACCATCAAATCCGCTCCAT 240
|||||||||||||||||||| |||||| ||||| ||||||| || |||||||||||||||
Sbjct 181 TGCAGGCTGTGATTAACGCCGTCAAGAGCCTCCGTTCCAACGCCGTCAAATCCGCTCCAT 240
Query 241 CGGGGATCTTACCAAGGAGCCTTTCTCGGCGGTTAGCAACCAAGAACAAAGCAGAAAACC 300
|||||||||||||||||||||| |||||||| ||| || |||||||||||||| ||||||
Sbjct 241 CGGGGATCTTACCAAGGAGCCTCTCTCGGCGATTAACACCCAAGAACAAAGCAAAAAACC 300
Query 301 AAGCAAGCATCACCGTTATTCGAGTCAAAGACATCGTGCGATGGCA-CTCGTCTAAGGAC 359
|||||||||||||| || |||| ||||||||||||||||| ||| | ||||||||||||
Sbjct 301 AAGCAAGCATCACCATTGTTCGGGTCAAAGACATCGTGCGGTGG-AGTTCGTCTAAGGAC 359
Query 360 CTGCATGAGGACATATCACATTTTGAA---------CCTCATCAGTACACAACCAAGAAC 410
|||||||| |||||||||||||| ||| ||||||||||||||||||||| ||
Sbjct 360 CTGCATGAAGACATATCACATTTCGAACCGTCTCCGCCTCATCAGTACACAACCAAG-AC 418
Query 411 A-CGACAACAACCACAGGATCCTCCACCACCAGCGGCACATCCTGCAGCAGTTGGTCTGA 469
| | ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 419 AGCAACAACAACCACAGGATCCTCCACCACCAGTGGCACATCCTGCAGCAGTTGGTGTGA 478
Query 470 CTTGGATTTTACATCGGAGTTTTTACCATCATCATGGGGAAGTAACGTTGAGGAGTGCGG 529
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 479 CTCGGATTTTACATCGGAGTTTTTACCATCATCATGGGGAAGTATCGTTGAGGAGTGCGG 538
Query 530 TGAAAAACAGAGTGTTAAAAACAACTTACACTGCGTCGGCGAAGATTCTTGCACAGCAGT 589
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 539 TGAAAAAGAGAGTGTTAAAAGCAACTTACACTGCGTCGGCGAAGATTCTTGCACAGCAGT 598
Query 590 AATACTAGCCGACACTGAAGTGGGACCTGAGGAGAACTTACAGTGTGAAAAGGAGCACAA 649
|||| | ||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 599 AATAGTCGCCGACACTGAAGTGGGACCTGAGGAGGACTTACAGTGTGAAAAGGAGCAAAA 658
Query 650 CAGCCCTGTCTCAGTGTTTGAGATTCAACATGAGGAATATGACGAAACATCAGACTCTTC 709
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 659 CAGCCCTGTCTCAGTGTTTGAGATTCAACATGAGGAATATGACGAAGCATCAGACTCTTC 718
Query 710 TTTCAGTCAATGCCTTGACAATGTGGAAAGAACCAAACAAAAGCTCATGCAAACGATTCA 769
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 719 TTTCAGTCAATGCCTTGACAATGTGGAAAGAACCAAAGAAAAGCTTATGCAAACGATTCA 778
Query 770 GCGGTTTGAGTCTTTGGCCAACATTAGTCCTTTCAATTTGGATGAATGGGGCTCAATGGA 829
|||||||||||| |||||||||||||||||||||||||| || |||||||| ||||||||
Sbjct 779 GCGGTTTGAGTCGTTGGCCAACATTAGTCCTTTCAATTTAGACGAATGGGGATCAATGGA 838
Query 830 TGAAGCATCTTGCATGGAAGGAGGACAAGAGACA-G-AT-ACC-A--A-G-T-atgatga 880
||| | |||||||||||||||||||||||||||| | || | | | | | |||||||
Sbjct 839 TGATGAATCTTGCATGGAAGGAGGACAAGAGACATGTATCAAATATGATGATGATGATGA 898
Query 881 tgatgagaattgtgatactgttgatagagagagtgaagatgaatacaatgatgagGTTGA 940
||||||||||||||||||||||||| | |||| |||||||||| | ||||||||||||
Sbjct 899 TGATGAGAATTGTGATACTGTTGATGGCGAGACTGAAGATGAAGATGCTGATGAGGTTGA 958
Query 941 AGAGAAGGCAGCACAGCTATGGAACCGAGTCAAAGAAAGACACGCCATTTGGATCCACGA 1000
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 959 AGAGAAGGCAGCACAGCTATGGAACCGGGTCAAAGAAAGACATGCCATTTGGATCCACGA 1018
Query 1001 AGAACATCTGATAATGGACTATTTCAGAGATGAATTGATGCAAAGGACAAACTCATTCCA 1060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 AGAACATCTGATAATGGACTATTTCAGAGATGAATTGATGCAAAGGACAAACTCATTCCA 1078
Query 1061 CGAAACTCAACACTTTGAGAACCAATTGGTATGCG-AGGCAAAAGGATGGTTGCAGGGAA 1119
|||||||||||||||| || |||||||||| ||| ||||||||||||||||||| |||
Sbjct 1079 CGAAACTCAACACTTTAAGGACCAATTGGTG-GCGGAGGCAAAAGGATGGTTGCATGGAT 1137
Query 1120 AGAGAGAATCAGAGCTTGAACGCGGAACAAGT-GAGCAGAGGAGACAAGCATGTGCTAGA 1178
| | ||||||||||||||||||||||||| || | |||||||||||||||||||| || |
Sbjct 1138 ATAAAGAATCAGAGCTTGAACGCGGAACA-GTTGGGCAGAGGAGACAAGCATGTGTTAAA 1196
Query 1179 GAAATCGAAAGACGAGACTGGAATGAGAAACAGATAGAGGAGGAGCACGAAGTGGTGGTT 1238
||||||||||||||||| |||||||||||||||| | | |||||| ||| |||||||||
Sbjct 1197 GAAATCGAAAGACGAGATTGGAATGAGAAACAGAGAAACGAGGAGGGCGATGTGGTGGTT 1256
Query 1239 ACACAGATTGAGGAAGAACTCTTCAGCCTGTTAATGGACGAAACTTTAACAACGCTCTCT 1298
|||||||||||||||| ||||||||||||||||||||| ||||| ||||| ||||||
Sbjct 1257 ACACAGATTGAGGAAGGACTCTTCAGCCTGTTAATGGAAGAAACGTTAACTGCGCTCT-- 1314
Query 1299 ACCAAAACTGATTCCAGTCCACCTGAACATCACAAAACAGTAACATCAATGCTTAAGCTT 1358
|||| |||||||||||||||||||||||||| |||| ||| |||||||||||||||||||
Sbjct 1315 ACCAGAACTGATTCCAGTCCACCTGAACATCGCAAA-CAGAAACATCAATGCTTAAGCTT 1373
Query 1359 TAGAAATTAGAAAGCAAAAACATTTTTGAATAAGGCTTTGACTTAAAAGCTCAGGttttt 1418
|||||| || || |||||| ||||||||||||| | |||||||||||
Sbjct 1374 TAGAAAGTACAAGGCAAAA-CATTTTTGAATAA-------A-------GCTCAGGTTTT- 1417
Query 1419 ttAGCTCTACTTTTGTAAGAATGAAGCAAACGAATAATACAATGTATATTGACCTCTAAA 1478
||||||||||||||||||| ||||||||||||||| |||||||| ||| |||| ||||
Sbjct 1418 --AGCTCTACTTTTGTAAGAAGGAAGCAAACGAATAACACAATGTAAATTAACCTATAAA 1475
Score = 102 bits (55), Expect = 8e-21
Identities = 64/68 (94%), Gaps = 2/68 (3%)
Strand=Plus/Plus
Query 1640 AATTAAGCAGC-AAGCGTGGATTCGCGATCGCAGCCATTGAAATTAAAATCCCTAAATCA 1698
||||||||| | |||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 1544 AATTAAGCA-CTAAGCGTAGATTCGCGATCGCAGCCATTGAAATTAAAAACCCTAAATCA 1602
Query 1699 AAGCCTAT 1706
||||||||
Sbjct 1603 AAGCCTAT 1610
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67115011690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5