BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00810.1
Length=676
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490484 jgi|Araly1|490484|fgenesh2_kg.6__3618__AT4G00810.1 808 0.0
Ahg330665 jgi|Araly1|330665|fgenesh1_pm.C_scaffold_8000008 331 4e-90
> Ahg490484 jgi|Araly1|490484|fgenesh2_kg.6__3618__AT4G00810.1
Length=568
Score = 808 bits (437), Expect = 0.0
Identities = 527/569 (93%), Gaps = 11/569 (2%)
Strand=Plus/Plus
Query 3 AATCGTAGTCTGAGGTATTTTTCTCGATCCTCAAACATTTCCAACACCTAAAGGCTTATT 62
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1 AATCGCAGTCTGAGGTATTTTTCTTGATCCTCAAACATTTCCAACACCTAAAGGCTTTTT 60
Query 63 CGTTACAGATTTCTCACCAATCTTCGGATTTATTGTGCTCAGACAATGTCGACAGTCGGA 122
|||||||||||||||||||||||| || ||||||||||||||||||||||||| || |||
Sbjct 61 CGTTACAGATTTCTCACCAATCTTAGGTTTTATTGTGCTCAGACAATGTCGACTGTGGGA 120
Query 123 GAACTTGCTTGCAGCTACGCTGTTATGATCCTTGAAGACGAGGGCATTGCCATCACTTCT 182
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 GAACTTGCTTGCAGCTACGCTGTTATGATCCTTGAGGACGAGGGCATTGCCATCACTTCT 180
Query 183 GATAAGATTGCGACTTTGGTCAAAGCGGCTGGTGTTGAGATTGAGTCTTACTGGCCAATG 242
||||||||||||||| |||||||||| |||||||||||| ||||||||| ||||||||||
Sbjct 181 GATAAGATTGCGACTCTGGTCAAAGCTGCTGGTGTTGAGGTTGAGTCTTTCTGGCCAATG 240
Query 243 TTATTCGCCAAGATGGCTGAGAAGAGAAATGTCACAGACCTTATCATGAATGTTGGTGCT 302
|||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 241 CTATTTGCCAAGATGGCTGAGAAGAGAAATGTCACCGACCTCATCATGAATGTTGGTGCC 300
Query 303 GGTGGTGGTGGAGGCGGTGCCCCAGTGTctgctgccgcacctgctgctgctggaggagct 362
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 GGTGGTGGTGGAGGCGGTGCCCCCGTGTCTGCTGCCGCACCTGCTGCTGCTGGAGGAGCT 360
Query 363 gctgctgctgcccctgctAAGGAGGAGAAGAAGGACGAACCCGCAGAAGAGAGTGATGGA 422
|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 361 ACTGCTGCTGCCCCTGCTAAGGAGGAGAAGAAGGATGAACCCGCAGAAGAAAGTGATGGA 420
Query 423 GATCTTGGTTTCGGCTTGTTCGATTAGTTGTCTCCTT-TCATTT-T---A-CGT-TTCAT 475
||||||||||||||||||||||||||||||| ||||| | ||| | | | | ||| |
Sbjct 421 GATCTTGGTTTCGGCTTGTTCGATTAGTTGTTTCCTTGTTTTTTGTTTTAAC-TCTTCCT 479
Query 476 ATGTTCTATTGCTTTAGTTGCTTTGAGATTTTAAGTTTTGTCATTTCGACACTACTACAG 535
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 480 ATGTTCTATTGCTTTAGTTGCTTTGAGATTTTAAGTTATGCCATTTCGACACTACTACAC 539
Query 536 TTTACTC--TT-ATATCATGTACTGGAGT 561
||| || || ||||||||| |||||||
Sbjct 540 TTTGGTCCATTTATATCATGTGCTGGAGT 568
> Ahg330665 jgi|Araly1|330665|fgenesh1_pm.C_scaffold_8000008
Length=336
Score = 331 bits (179), Expect = 4e-90
Identities = 296/349 (85%), Gaps = 22/349 (6%)
Strand=Plus/Plus
Query 108 ATGTCGACAGTCGGAGAACTTGCTTGCAGCTACGCTGTTATGATCCTTGAAGACGAGGGC 167
||||||||||| ||||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct 1 ATGTCGACAGTGGGAGAGCTTGCTTGCAGCTACGCTGTTATGATCCTCGAGGACGAGGGT 60
Query 168 ATTGCCATCACTTCTGATAAGATTGCGACTTTGGTCAAAGCGGCTGGTGTTGAG-ATTGA 226
||||| ||||| |||| || || || |||||||| ||||| ||||||||| | |||||
Sbjct 61 ATTGCTATCACGGCTGACAAAATCGCCACTTTGGTGAAAGCTGCTGGTGTT-ACTATTGA 119
Query 227 GTCTTACTGGCCAATGTTATTCGCCAAGATGGCTGAGAAGA-GAAATGTCACAGACCTTA 285
||| |||||||||||| |||||||||||||||||||||| | | |||||||| || || |
Sbjct 120 GTCATACTGGCCAATGCTATTCGCCAAGATGGCTGAGAA-ACGTAATGTCACTGATCTAA 178
Query 286 TCATGAATGTTGGTGCTGGTGGTGGTGGAGGCGGTGC-CCCAGTGTctgctgccgcacct 344
||||||| ||||||||||||||||| ||| ||||| ||| || | ||||| || |
Sbjct 179 TCATGAACGTTGGTGCTGGTGGTGG---AGGTGGTGCTCCC-GT-T--GCTGCTGC---T 228
Query 345 gctgctgctggaggagctgc-tgctgctgcccctgct--A-AGGAGGAGAAGAAGGACGA 400
|||||||| || || ||||| | | ||||| |||||| | ||||| |||||||||||||
Sbjct 229 GCTGCTGCCGGTGGTGCTGCCT-CAGCTGCTCCTGCTGCAGAGGAGAAGAAGAAGGACGA 287
Query 401 ACCCGCAGAAGAGAGTGATGGAGATCTTGG-TTTCGGCTTGTTCGATTA 448
||| ||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 288 ACCAGCAGAAGAGAGTGATGGAGAT-TTGGGTTTCGGCTTGTTCGATTA 335
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24818018967
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5