BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00820.1
Length=2032
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943671 jgi|Araly1|943671|scaffold_604215.1 2457 0.0
Ahg333544 jgi|Araly1|333544|fgenesh1_pg.C_scaffold_1000109 617 8e-176
> Ahg943671 jgi|Araly1|943671|scaffold_604215.1
Length=1645
Score = 2457 bits (1330), Expect = 0.0
Identities = 1546/1651 (94%), Gaps = 12/1651 (1%)
Strand=Plus/Plus
Query 165 TAAATCCTACCTAACCTCCAATGGGTAAGAAGAGC-GG---TTCTTCTTCTTCTTGGCTC 220
||||| | |||||| | |||||||||||||||| | || |||||||||||||||||||
Sbjct 1 TAAATTCGACCTAATCACCAATGGGTAAGAAGA-CTGGTTCTTCTTCTTCTTCTTGGCTC 59
Query 221 ACTGCCGTGAAACGAGCTTTCCGATCTCCCACCAAGAAAGAACACAACAACAATGCTCAT 280
|| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 60 ACCGCCGTTAAACGAGCTTTCCGATCTCCCACCAAGAAAGAACATAACAACAATGCTCAC 119
Query 281 GGTAATGAAGTCGACGAAGATGAAGACAAGAAGAAAGAGAAGAGACGTTGGTTATTTAGA 340
||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 120 GGTAATGCAGTCGACGAAGATGAAGACAAGAAGAAAGAGAAGAAACGGTGGTTATTTAGA 179
Query 341 AAATCTACGAATCATGACTCTCCGGTGAAGACCTCCGGCGTCGGAAAAGACGCTCCGGCG 400
||| | |||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 180 AAACCGACGAATCATGACTCTCCGGTGAAGACCTCCGGCGTCGGAAAAGAAGTTCCGGCA 239
Query 401 CAGAAATCCACAGAAACAACGACGATCATCAACCCAACCGTTTTATCCTCTGTTACAGAA 460
|||||||||||||| || |||||| ||||||||||||| || ||||||||||||| ||
Sbjct 240 CAGAAATCCACAGATACTACGACG---ATCAACCCAACCGCTTCATCCTCTGTTACAAAA 296
Query 461 CAGAGGTACGA-CGCATCTACACCGCCGGCCACCGTCTCCGCCGCATCGGAAACTCATCC 519
||||| ||| | ||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 297 CAGAGATAC-ACCGCATCTACACCGCCCACCACCTTCTCCGCCGCATCGGAAACTCATCC 355
Query 520 TCCTTCGACAACGAAGGAGTTACCAAATCTTACAAGACGTACTTATACCGCAAGAGAAGA 579
|||| | | |||| |||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 356 TCCTCCTCCGACGATGGAGTTACTAAATCTTACAAGACGGACTTATACCGCAAGAGAAGA 415
Query 580 TTACGCAGCTGTTGTAATCCAAACTGGTTTCAGAGGCTATTTGGCAAGAAGAGCATTAAG 639
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 416 TTACGCAGCTGTTGTAATCCAAACTGGTTTCAGAGGCTATCTGGCAAGAAGGGCATTAAG 475
Query 640 AGCATTGAAAGGGCTAGTGAAGTTACAAGCACTAGTGAGAGGTCACAATGTGAGGAAGCA 699
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 476 AGCATTGAAAGGGCTTGTGAAGTTACAAGCACTTGTGAGAGGTCACAATGTGAGGAAGCA 535
Query 700 AGCAAAGATGACTTTAAGGTGTATGCAAGCTCTAGTTCGAGTCCAATCTCGTGTGCTTGA 759
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 536 AGCAAAGATGACTTTAAGGTGTATGCAAGCTCTGGTTCGCGTCCAATCTCGTGTGCTTGA 595
Query 760 CCAACGGAAACGCTTGTCTCACGATGGTAGTCGCAAATCTGCCTTCAGCGACACTCAAAG 819
|||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 596 CCAACGTAAACGTTTGTCTCACGACGGTAGTCGCAAATCTGCCTTCAGCGACACTCAAAG 655
Query 820 TGTGCTCGAATCTCGTTATCTTCAAGAAATATCAGACAGAAGATCCATGTCAAGAGAAGG 879
||| || |||||||||||||||||||| || |||||| ||||||| ||||||||||||||
Sbjct 656 TGTACTTGAATCTCGTTATCTTCAAGACATTTCAGACCGAAGATCAATGTCAAGAGAAGG 715
Query 880 AAGTAGCATTGCGGAAGATTGGGATGATCGACCACACACGATTGAGGAAGTGAAAGCAAT 939
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 AAGCAGCATTGCGGAAGATTGGGATGATCGACCACACACGATTGAGGAAGTGAAAGCAAT 775
Query 940 GTTGCAACAAAGACGAGACAATGCGTTGAGACGTGAGAGTAACAATAGTATATCACAAGC 999
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 776 GTTGCAACAAAGACGAGACAATGCGTTGAGACGAGAGAGTAACAATAGTTTATCACAAGC 835
Query 1000 TTTCTCTCACCAGGTTCGGAGAACAAGAGGTAGTTATTCTACAGGAGACGAGTATGAAGA 1059
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 836 TTTTTCTCACCAGGTTCGGAGAACAAGAGGTAGTTATTCTACAGGAGACGAGGATGAAGA 895
Query 1060 AGAGAGACCGAAATGGTTAGACAGATGGATGGCTTCTAAACCGTGGGATAAACGAGCTTC 1119
|||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 896 AGAGAGGCCGAAATGGTTAGACCGATGGATGGCTTCTAAACCATGGGATAAACGAGCTTC 955
Query 1120 AACGGATCAAAGAGTACCACCGGTTTACAAAACCGTGGAGATCGATACTTCTCAACCGTA 1179
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 956 AACGGATCAAAGAGTACCACCAGTTTACAAAACCGTGGAAATCGATACTTCTCAACCGTA 1015
Query 1180 TTTAACCCGCGGTAACTCGAGAACCGGTGCAAGTCCAAGCCGTAGCCAAAGGCCTAGTTC 1239
||||||||| |||||||| ||||| ||||| |||| |||||||| ||||||||||||||
Sbjct 1016 TTTAACCCGTGGTAACTCAAGAACAGGTGCCAGTCAAAGCCGTAATCAAAGGCCTAGTTC 1075
Query 1240 ACCATCAAGGACCAGCCACCATTACCAACAACACAATTTCTCATCAGCTACACCATCTCC 1299
||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1076 ACCATCAAGAACCAGCCATCATTACCAACAACACAATTTCTCATCAGCTACACCGTCTCC 1135
Query 1300 GGCTAAATCTAGACCGATACAAATTCGATCCGCTAGTCCGCGGATCCAAAGAGATGATCG 1359
||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| ||
Sbjct 1136 CGCTAAATCTAGACCGATACAAATCCGATCCGCCAGTCCACGGATCCAAAGAGATGACCG 1195
Query 1360 GTCAGCGTACAACTACACATCAAACACACCTAGCTTGAGATCTAACTATAGTTTCACAGC 1419
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1196 GTCAGCATACAACTACACATCAAACACACCTAGCTTGAGATCTAACTATAGTTTCACTGC 1255
Query 1420 AAGAAGTGGTTATAGTGTTTGTACCA-CTACTACTACTGCTACAAATGCTGCATTGCCAA 1478
||||||||||||||| |||| || || ||||||||||||||||||||||||| |||||||
Sbjct 1256 AAGAAGTGGTTATAGCGTTTCTA-CAGCTACTACTACTGCTACAAATGCTGCGTTGCCAA 1314
Query 1479 ACTACATGGCGATTACGGAATCTGCTAAGGCTAGAATCCGGTCTCAGAGTGCACCAAGGC 1538
|||||||||| ||||||||||| || |||||||||||||||||||| |||||||||||||
Sbjct 1315 ACTACATGGCCATTACGGAATCCGCAAAGGCTAGAATCCGGTCTCAAAGTGCACCAAGGC 1374
Query 1539 AACGGCCTTCAACACCCGAGAAAGAACGTATCAGTTCAGCTAGAAAACGGCTTTCGTTTC 1598
|||| ||||| ||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1375 AACGACCTTCGACACCCGAGAAAGAACGTATCGGGTCAGCTAGAAAACGGCTTTCGTTTC 1434
Query 1599 CAGTTCCACCGCTGCCGCAGCAAATGGATGGTCAGAGTTTAAGGAGTCCAAGTTTCAAGA 1658
| |||||||||||||| |||||||| || ||||||||||||||||||||||| ||||| |
Sbjct 1435 CGGTTCCACCGCTGCCTCAGCAAATAGACGGTCAGAGTTTAAGGAGTCCAAGCTTCAAAA 1494
Query 1659 GTATAGGTGGCTCACAATTGGGTGCATTGGAACAACAATCAAATTACTCTTCTTGTTGTA 1718
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1495 GTATAGGAGGCTCACAATTGGGTGCATTGGAGCAACAATCAAATTACTCTTCTTGTTGTA 1554
Query 1719 CTGAGTCTCTTGGTGGTGGTGGAGAGATATCACCTGCTTCTACTAGCGATTATAGGCGAT 1778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 CTGAGTCTCTTGGTGGTGGTGGAGAGATATCACCTGCTTCTACTAGCGATTATAGGCGAT 1614
Query 1779 GGTTAAGATGATTCCATAATCCAACCAAATC 1809
|||||||||||||||||||||||||||||||
Sbjct 1615 GGTTAAGATGATTCCATAATCCAACCAAATC 1645
> Ahg333544 jgi|Araly1|333544|fgenesh1_pg.C_scaffold_1000109
Length=1584
Score = 617 bits (334), Expect = 8e-176
Identities = 948/1226 (77%), Gaps = 116/1226 (9%)
Strand=Plus/Plus
Query 568 CGCAAGAGAAGATTACGCAGCTGTTGTAATCCAAACTGGTTTCAGAGGCTATTTGGCAAG 627
|||||||||| ||||||| |||||||| ||||| ||| ||||||||| |||||||||||
Sbjct 351 CGCAAGAGAAAATTACGCTGCTGTTGTTATCCAGACTTCTTTCAGAGGATATTTGGCAAG 410
Query 628 AAGAGCATTAAGAGCATTGAAAGGGCTAGTGAAGTTACAAGCACTAGTGAGAGGTCACAA 687
|||||||||||||||||| |||||| |||||||| |||||||| | ||||| ||||| ||
Sbjct 411 AAGAGCATTAAGAGCATTAAAAGGGTTAGTGAAGCTACAAGCATTGGTGAGGGGTCATAA 470
Query 688 TGTGAGGAAGCAAGC-AAAGATGACTTTAAGGTGTATGCAAGCTCTAGTTCGAGTCCAAT 746
|||||| || ||||| ||| ||||| |||||||||||||||||||| ||||||||||| |
Sbjct 471 TGTGAGAAAACAAGCCAAA-ATGACATTAAGGTGTATGCAAGCTCTGGTTCGAGTCCAGT 529
Query 747 CTCGTGTGCTTGACCAACGGAAACGCTTGTCTCACGATGGTAGTCGCAAATCTGCCTTCA 806
||||||||||||||||||| |||||||||||||| || |||||||||||||| || ||||
Sbjct 530 CTCGTGTGCTTGACCAACGCAAACGCTTGTCTCATGACGGTAGTCGCAAATCCGCGTTCA 589
Query 807 GCGACACTCAAAG-TGTGC-TCGAATCTCGTTATCTTCAAGAAATATCAGA-CAGA-AGA 862
||||| |||| | ||| | |||||||| ||||||||||| |||||||| | || | |
Sbjct 590 GCGACTCTCAC-GCTGTTTAT-GAATCTCGATATCTTCAAGAGATATCAGATC-GACA-A 645
Query 863 TCCATGTCAAGAGAAGGAAGTAGCATTGCGGAAGATTGGGATGATCGACCACACACGATT 922
|||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||
Sbjct 646 TCCATGTCAAGAGAAGGAAGCAGCGCCGCGGAAGATTGGGATGACCGACCACACACGATA 705
Query 923 GAGGAAGTGAAAGCAATGTTGCAACAAAGACGAGACA-ATGCGTTGAGACGTGAGA-GTA 980
|| ||||||||||| ||| | |||| ||||| |||| | || ||||||| ||||| | |
Sbjct 706 GACGAAGTGAAAGCGATGCTACAACGGAGACGGGACACA-GCATTGAGACATGAGAAG-A 763
Query 981 AC-AATAGTATATCACAAGCTTTCTCTCACCAGGT-TCGGAGAACAAGAG-GTAGTTATT 1037
| ||| | | || |||||||||||||| || | | ||||||| | ||| | |
Sbjct 764 -CTAAT--T-TGTCTCAAGCTTTCTCTCAACATATGT-GGAGAACG-GTTCGTAACCAAT 817
Query 1038 C--TAC-AGGAGAC---GAG-T--A--T-GAAGAAGAGAGACCGAAATGG-TTAGACAGA 1084
| | ||||||| ||| | | | || || || ||||| |||||| || ||| |
Sbjct 818 CCGTGGGAGGAGACCACGAGGTGGAACTTGAGGAGGAAAGACCAAAATGGCTT-GACCGG 876
Query 1085 TGGATGGCTTCTAAACCGTGGGATAAACGAGCTTCAACG--GATCAAAGAGT--ACCACC 1140
||||||||| ||| ||||||||||||||||||| | | || | | || ||||
Sbjct 877 TGGATGGCTACTAGACCGTGGGATAAACGAGCTAGTA-GTAGAGCTTCG-GTTGACCAAA 934
Query 1141 GG-TTT-AC--AAAACCGTGGAGATCGATACTTCTCAACCGTATTTAACCCGCGGTAACT 1196
|| ||| | |||||||| || ||||| |||||||| || || | || | |||
Sbjct 935 GGATTTCAGTTAAAACCGTTGAAATCGACACTTCTCAGCCTTACTCAA---G----AACA 987
Query 1197 CGAGAACCGGTGCAAGTCCAAGCCGTAGCCAAAGGCCTAGTTCACCATCAAGGACCAGCC 1256
||||| || ||| || || ||||||||||| |||||||| |||||||| || ||||
Sbjct 988 --AGAACAGG---AAGCCCGAGTCGTAGCCAAAGACCTAGTTCCCCATCAAGAACTAGCC 1042
Query 1257 ACCATTACCAA-CAACACAAT--TTCTCATCAGCTACACCATCTCCGGCTAAATCTAGAC 1313
||||||||||| | | |||| || || ||||| || |||||||||||| | |||||||
Sbjct 1043 ACCATTACCAATCC-CGCAATAATT-TC-TCAGCCACTCCATCTCCGGCTCAGTCTAGAC 1099
Query 1314 CGATACAAATTCGATCCGCTAGTCCGCGGAT-CCA-A-AGA---GATG-AT--C-GGT-C 1362
| ||||| ||||| || |||||||| ||| | ||| | ||| || | | | || |
Sbjct 1100 CAATACATATTCGGTCAGCTAGTCCACGG-TGCCAGAGAGACCCGAGGGAAGACCGGGAC 1158
Query 1363 AGCGTA-C--A-ACT-ACACATCAAACACACCTAGCTTGAGATCTAACTATAGTTTCACA 1417
| ||| | | | | |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1159 CGAGTAGCTTATAGTTACACATCAAACACACCAAGCTTGAGATCTAACTATAGTTTCACA 1218
Query 1418 GCAAGAAGTGGTTATAGTGTTTGTACCACTACTACTACTGCTACA-AATGC-TGCATTG- 1474
|| || ||||| | ||| || ||||||| | | | | || | ||||| | |||||
Sbjct 1219 GCTAGGAGTGGATGTAGCATTAGTACCAC-A--A-TGGT--TA-ATAATGCAT-CATTGT 1270
Query 1475 --CCAAACTACATGGCGATTACGGAATCTGCTAAGGCTAGAATCCGGTCTCAGAGTGCAC 1532
|| || |||||||| | |||||| || |||||||| || |||||||||||||| ||||
Sbjct 1271 TGCCTAATTACATGGCTAGTACGGAGTCGGCTAAGGCGAGGATCCGGTCTCAGAGCGCAC 1330
Query 1533 CAAGGCAACG-GCCTTCAACACCCGAGAAAGAACGTATCAG-TTCAG-CTAGAAAACGGC 1589
| |||||||| |||| |||| ||||||| || ||| | | || | | ||||| ||||
Sbjct 1331 CGAGGCAACGAGCCT-CAACTCCCGAGAGGGACCGTG-CGGGTTTGGTCAAGAAA-CGGC 1387
Query 1590 TTTCGTTTCCAGTTCCACCGCTGCC-GCAGCAA-ATG-G-ATGGTCAGAGTTTAAGGAGT 1645
| |||| || || || || | ||| || | || ||| | | | | || |||||||||
Sbjct 1388 TCTCGTACCCTGTACC-CC-C-GCCAGCGG-AATATGAGGACAATAATAGCTTAAGGAGT 1443
Query 1646 CCAAG-TTTCAAGAGTATAGG-TGGCTCACAATTGGGTGCATTGG-A-A-CAACAATCAA 1700
||||| ||| |||||| | || ||| ||||| || |||| | || | | || ||||| |
Sbjct 1444 CCAAGCTTT-AAGAGTGT-GGCTGGTTCACATTTTGGTGGAATGTTAGAGCAGCAATCGA 1501
Query 1701 ATTACTCTTCTTGTTGTACTGAGTCT 1726
|||||||||| ||||| |||||||||
Sbjct 1502 ATTACTCTTCATGTTGCACTGAGTCT 1527
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76409031470
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5