BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00830.1
Length=1930
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490482 jgi|Araly1|490482|fgenesh2_kg.6__3616__AT4G00830.1 2966 0.0
> Ahg490482 jgi|Araly1|490482|fgenesh2_kg.6__3616__AT4G00830.1
Length=1878
Score = 2966 bits (1606), Expect = 0.0
Identities = 1757/1828 (96%), Gaps = 17/1828 (1%)
Strand=Plus/Plus
Query 1 TAGCCCACGAGTGGGTAAGGAGTGTCTTCATCTTCTTCTACCGGAGATCGAGAAATAGCC 60
|||||||||||||||||||||||||||||||| || | |||||||||||||||||||||
Sbjct 1 TAGCCCACGAGTGGGTAAGGAGTGTCTTCATCATC--C-ACCGGAGATCGAGAAATAGCC 57
Query 61 GACGAAGTTTTGTTTTTTGAGTAAAACAGTATTCGTCGGACAACCGAAGCGAAATCCCTA 120
||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 GACGAAG-TTTG--TTTTGAGTAAAACAGTATTCGTCGGACAACCGAAGCGAAATCCCTA 114
Query 121 ATTTCCCACAACACGAAATACCAATTTCCCCAATTCGAAAACAAACACGGTCTGATGTCA 180
|||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 115 ATTT-CC-CAACACGAAATACCAATTTCCCCAATTCGAAAACAAACACGGTCGGATGTCA 172
Query 181 GACGCAAGAGATAATGATGACCGTGTGGATTTCGAGGAGGGTAGCTACAGTgagatggag 240
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 173 GACGCTAGAGATAATGATGACCGTGTTGATTTCGAGGAGGGTAGCTACAGTGAGATGGAG 232
Query 241 gatgaagtggaggaggaacaagtagaagagtatgaagaggaggaagaagaagatgatgat 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 233 GATGAAGTGGAGGAGGAACAAGTAGAAGAGTATGAAGAGGAGGAAGAAGAAGATGAAGAT 292
Query 301 gatgatgaCGTTGGCAATCAGAATGCCGAAGAACGTGAGGTGGAGGATTATGGTGATACA 360
|||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 293 GATGATGACGGTGGCAATCAGAATGCCGAAGAACGTGACGTGGAAGATTATGGTGATACA 352
Query 361 AAAGGTGGGGATATGGAAGATGTTCAGGAGGAAATAGCTGAAGATGACGACAACCATATT 420
||||| |||||||||| | | | |||||||||||||||||||||||||||||||||||||
Sbjct 353 AAAGGAGGGGATATGG-A-A-GCTCAGGAGGAAATAGCTGAAGATGACGACAACCATATT 409
Query 421 GATATTGAGACAGCAGATGATGATGAGAAACCACCATCTCCTATTGATGATGAAGATAGG 480
||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 410 GATATCGAGACAGCAGATGATGATGAGAAACCAGCATCTCCTATTGATGAGGAAGATAGG 469
Query 481 GAAAAGTATTCCCACCTTCTTTCACTTCCTCCTCATGGTTCTGAAGTTTTTATTGGTGGG 540
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 470 GAAAAGTATTCCCATCTTCTTTCACTTCCTCCTCATGGCTCTGAAGTTTTTATTGGCGGG 529
Query 541 CTCCCAAGGGATGTTGGAGAAGAGGACCTGAGGGATCTATGTGAAGAGATAGGCGAGATC 600
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 530 CTCCCGAGGGATGTTGGAGAAGAGGACCTGAGGGATCTATGTGAAGAAATAGGCGAGATC 589
Query 601 TTTGAGGTGAGACTGATGAAAGATAGGGACTCTGGTGATAGCAAAGGCTATGCTTTTGTA 660
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 590 TTTGAGGTGAGACTGATGAAAGACAGGGACTCTGGTGATAGCAAAGGCTATGCTTTTGTA 649
Query 661 GCTTTCAAAACCAAAGACGTTGCACAAAAGGCCATTGAGGAGTTGCACAGTAAAGAGTTT 720
|| |||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 650 GCCTTCAAAACGAAAGATGTTGCACAAAAGGCCATTGAGGACTTGCACAGTAAAGAGTTT 709
Query 721 AAGGGAAAAACCATAAGGTGCTCTCTTTCCGAAACGAAGAATAGGTTGTTCATTGGTAAC 780
||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 710 AAGGGAAAAACCATAAGATGCTCTCTTTCCGAAACTAAGAATAGGCTGTTCATTGGTAAC 769
Query 781 ATACCAAAGAACTGGACTGAGGATGAGTTTAGAAAAGTCATAGAGGATGTTGGTCCTGGA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 ATACCAAAGAACTGGACTGAGGATGAGTTTAGAAAAGTCATAGAGGATGTTGGTCCTGGA 829
Query 841 GTGGAGAACATCGAGCTCATAAAAGACCCAACAAATACCACTCGTAACCGTGGTTTTGCA 900
|| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 830 GTAGAGAACATCGAGCTCATAAAAGACCCAGCAAATACCACGCGTAACCGTGGTTTTGCA 889
Query 901 TTTGTTTTGTACTATAACAATGCATGTGCTGATTATTCAAGACAGAAAATGATAGATTCT 960
|||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 890 TTTGTTTTATACTATAACAATGCATGTGCTGATTATTCAAGGCAGAAAATGATCGATTCT 949
Query 961 AATTTTAAGCTTGAGGGTAACGCTCCAACTGTGACTTGGGCAGACCCAAAAAGCTCTCCT 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 AATTTTAAGCTTGAGGGTAACGCTCCAACTGTGACTTGGGCAGACCCAAAAAGCTCTCCT 1009
Query 1021 GAGCATTCTGCTGCTGCTGCTCAGGTGAAAGCCCTTTATGTCAAGAATATTCCAGAGAAT 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 GAGCATTCTGCTGCTGCTGCTCAGGTGAAAGCCCTTTATGTCAAGAATATTCCAGAGAAT 1069
Query 1081 ACCTCAACAGAGCAGCTAAAGGAACTCTTTCAGAGGCATGGAGAAGTGACCAAAATCGTT 1140
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1070 ACCTCAACAGAGCAGCTAAAGGAACTCTTTCAGAGGCATGGAGAAGTGACGAAAATCGTT 1129
Query 1141 ACACCTCCTGGAAAGGGTGGAAAACGTGATTTTGGGTTTGTCCACTATGCTGAAAGATCT 1200
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1130 ACGCCACCTGGAAAGGGTGGAAAACGTGATTTTGGGTTTGTCCACTATGCTGAAAGATCT 1189
Query 1201 AGTGCATTGAAGGCTGTCAAAGATACCGAGAGATATGAAGTCAATGGTCAACCACTAGAA 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1190 AGTGCATTGAAGGCTGTCAAAGATACCGAGAGATATGAAGTCAATGGTCAACCACTAGAA 1249
Query 1261 GTTGTGCTTGCTAAACCCCAGGCTGAAAGGAAGCATGACCCTTCTTCTTATTCTTACGGG 1320
|||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 1250 GTTGTGCTTGCTAAACCCCAAGCTGAAAGGAAGCATGACCCTTCTTCTTATTCCTATGGC 1309
Query 1321 GCTGCACCTACTCCTGCCCCCTTTGTGCATCCCACGTTTGGTGGTTTTGCTGCGGCTCCT 1380
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 GCTGCACCTAATCCTGCCCCCTTTGTGCATCCCACGTTTGGTGGTTTTGCTGCGGCTCCT 1369
Query 1381 TACGGTGCTATGGGTGCCGGTTTGGGTATTGCCGGTAGTTTTAGTCAGCCAATGATCTAT 1440
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1370 TATGGTGCTATGGGTGCCGGTTTGGGTATTGCCGGTAGTTTTAGTCAGCCAATGATATAT 1429
Query 1441 GGTAGAGGAGCAATGCCAACAGGGATGCAAATGGTTCCAATGCTTCTTCCCGATGGCCGA 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1430 GGTAGAGGAGCAATGCCAACAGGGATGCAAATGGTTCCAATGCTTCTTCCCGATGGCCGA 1489
Query 1501 GTTGGCTATGTTCTGCAACAGCCTGGTATGCCGATGGCAGCAGCACCACCA-CAACGACC 1559
||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||
Sbjct 1490 GTTGGCTATGTTCTGCAACAGCCTGGTATGCAGATGGCAGCAGCACCACCAGCA-CGACC 1548
Query 1560 AAGAAGAAATGACCGGAATAACGGCTCAAGCGGAGGGTCAGGCAGAGATAACAGTCATGA 1619
|||||| ||||||||||||||| ||||| |||||||||||| ||||||||||||||||
Sbjct 1549 CAGAAGAGTTGACCGGAATAACGGATCAAGTGGAGGGTCAGGCCGAGATAACAGTCATGA 1608
Query 1620 ACATGATGGTAACCGAGGAGGCCGAAGGTACCGACCCTACTAGTAACCATAGAGAAAAAT 1679
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1609 ACATGATGGTAACAGAGGAGGCCGAAGGTACCGACCCTACTAGCAACCATAGAGAAAA-T 1667
Query 1680 AAGCAAGTAGAAAAAGAAAAGGAGAAGTGTATTGGGATTTGTTTGTAGTTTGTTT-TT-G 1737
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
Sbjct 1668 AAGCAAGTAGAAAAAGAAAAGGAGAGGTGTATTGGGATTTGTTTGTAGTTTGTTTCTTTG 1727
Query 1738 GAGAACTTTAAAAAGCTCTCTCTCATGTGTTATAAAATATGAAATCGAAACCTTATGGTT 1797
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1728 GAGAACTTTAAAA-GCTCTCTCTCATGTGTTATAAAATATGAAATCGAAACCTTACGGTT 1786
Query 1798 TCTGGTTTGATATGGAGACTGCTGGGGG 1825
|| |||||||||||||||||||||||||
Sbjct 1787 TCCGGTTTGATATGGAGACTGCTGGGGG 1814
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72523826480
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5