BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00840.1
Length=1275
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943669 jgi|Araly1|943669|scaffold_604213.1 1467 0.0
> Ahg943669 jgi|Araly1|943669|scaffold_604213.1
Length=916
Score = 1467 bits (794), Expect = 0.0
Identities = 867/903 (96%), Gaps = 2/903 (0%)
Strand=Plus/Plus
Query 155 TCCCTTTGACCAGGCTGGAGATGAACCTTTTCCGGTTCTGCTCCGGTCTGAAAGTCCTCG 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCCCTTTGACCAGGCTGGAGATGAACCTTTTCCGGTTCTGCTCCGGTCTGAAAGTCCTCG 60
Query 215 GCTATTTCATGATCCTTCTTGTCGTCGCCGTCGTTGGTGTATCTTACTACGCCGTCGTAG 274
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCTATTTCATGATCCTTCTCGTCGTCGCCGTCGTTGGTGTATCTTACTACGCCGTCGTAG 120
Query 275 TTAGCACATGGTGGCCGATCTTGATCCGCG-GAGACCATGGAGCTTTATCCGCCCTCGCT 333
|||||||||||||||||||||||||||| | | ||||||||||||||||| |||||||||
Sbjct 121 TTAGCACATGGTGGCCGATCTTGATCCG-GAGCGACCATGGAGCTTTATCTGCCCTCGCT 179
Query 334 GCCTTAATCATCTTTGTTTTCCATTTCCTGCTGATAATGCTGTTGTGGAGCTACTTCACA 393
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 180 GCCTTAATCATCTTTGTTTTTCATTTCCTGCTGATAATGTTGTTGTGGAGCTACTTCACA 239
Query 394 ACAGTTTTTACAGACCCAGGTTCTGTTCCTGAGCATTTCAGAAGAGAAATGGGAGGTGGT 453
|| || ||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 240 ACTGTATTTACAGACCCTGGTTCTGTTCCCGAGTATTTCAGAAGAGAAATGGGAGGTGGT 299
Query 454 GACAGTTTGGAGGCTGGTACTTCGACAGATCAAGGAGCTTTTGGCTCTTTAGGTTACTGT 513
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 300 GACAATTTGGAGGCTGGTACTTCGACAGAACAAGGAGCTTTTGGCTCTTTAGGTTACTGT 359
Query 514 ACCAAATGCCGGAATGTTAAGCCGCCTCGTTGCCATCATTGTTCTGTGTGTCAAAGATGT 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 ACCAAATGCCGGAATGTTAAGCCGCCTCGTTGCCATCATTGTTCTGTGTGTCAAAGATGT 419
Query 574 GTTCTTAAGATGGATCATCATTGTGTTTGGATTGTAAACTGTGTTGGAGCACGCAATTAC 633
||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 420 GTTCTCAAGATGGATCATCACTGTGTATGGATTGTAAACTGTGTTGGAGCACGCAATTAC 479
Query 634 AAGTTTTTCCTTCTCTTTCTGTTCTATACTTTTCTTGAGACAATGTTGGATGTTATTGTC 693
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 480 AAGTTTTTCCTTCTCTTTCTGTTGTATACTTTTCTTGAGACAATGTTGGACGTTATAGTC 539
Query 694 TTGCTTCCTAGTTTCATTGAATTCTTCAGCCAAGCTATAAAGCATTCTTCTTCTCCGGGT 753
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CTGCTTCCTAGCTTCATTGAATTCTTCAGCCAAGCTATAAAGCATTCTTCTTCTCCGGGT 599
Query 754 AAACTGGCCTCTCTCGTTCTGGCATTCGTTCTTAACTTTGCGTTCGTTCTCAGCCTTCTT 813
||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 600 AAACTGGCCTCCCTCGTTCTGGCATTTGTTCTTAACTTAGCGTTCGTTCTCAGCCTTCTT 659
Query 814 TGTTTCGTAGTCATGCATATTTCTCTTCTCTCATCCAACACTACTTCAGTTGAGGTTCAT 873
||||||||||||||||| ||||||||||||||||||||||||||||||| ||| | |||
Sbjct 660 TGTTTCGTAGTCATGCACCTTTCTCTTCTCTCATCCAACACTACTTCAGTCGAGATGCAT 719
Query 874 GAGAAAAATGGAGAAGTCAGATGGAAATATGACTTAGGAAAGAAGAAAAACTTCGAGCAG 933
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 720 GAGAAAAATGGAGAAGTCAGATGGAAATATGACTTGGGAAAGAAGAAAAACTTCGAGGAG 779
Query 934 GTTTTTGGGAAGAAGAAGGCGTTTTGGCTCCTCCCATTGTACTCTAAAGACGATATCGAT 993
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 780 GTTTTTGGGAAGAAGAAGGCGTTTTGGCTCCTCCCATTGTACTCTAAAGACGATCTCGAT 839
Query 994 AACATAACTTCCCTTGAAGGCCTTGAATTTCCAACTTGTTCTGACATCGACCCTTGATTG 1053
||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 840 AACATGACTTCCCTTCAAGGCCTTGAATTTCCAACTCGTTCTGACATCGACCCTTGATTG 899
Query 1054 AAA 1056
|||
Sbjct 900 AAA 902
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47653646250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5