BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00850.1
Length=1062
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327689 jgi|Araly1|327689|fgenesh1_pm.C_scaffold_6002909 933 0.0
Ahg918854 jgi|Araly1|918854|scaffold_100135.1 377 7e-104
> Ahg327689 jgi|Araly1|327689|fgenesh1_pm.C_scaffold_6002909
Length=699
Score = 933 bits (505), Expect = 0.0
Identities = 563/591 (95%), Gaps = 3/591 (1%)
Strand=Plus/Plus
Query 209 TATCTTGATGAGAACAAGAAGCTGATAATGGCGATCTTGGAAAATCAGAACCTCGGTAAA 268
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 109 TATCTTGATGAGAACAAGAAGCTGATAATGGCGATTTTGGAAAATCAGAACCTCGGTAAA 168
Query 269 CTTGCAGAATGTGCTCAGTATCAAGCTCTTCTCCAGAAGAATTTGATGTATCTCGCTGCA 328
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 169 CTTGCGGAATGTGCTCAGTATCAAGCTCTTCTCCAAAAGAATTTGATGTATCTCGCTGCA 228
Query 329 ATTGCGGATGCTCAACCTCAGCCACCAGCAGCTACACTAACATCAGGAGCCATGACTCCC 388
||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 229 ATTGCGGATGCTCAACCTCAGCCACCACCAGCTACACTAACACCAGGAGCCATGACTCCT 288
Query 389 CAAGCAATGGCTCCTAATCCGTCATCAATGCAGCCACCACCAAGCTACTTCATGCAGCAA 448
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 289 CAAGCAATGGCTCCTCATCCGTCAGCAATGCAGCCACCACCAAGCTACTTCATGCAGCAA 348
Query 449 CAT---CAAGCTGTGGGAATGGCTCAACAAATACCTCCTGGGATTTTCCCTCCTAGAGGT 505
||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 349 CATCAACAAGCTGTGGGAATGGCTCAACAAATACCTCCCGGGATTTTCCCTCCAAGAGGT 408
Query 506 CCATTGCAATTTGGTAGCCCGCATCAGTTTCTGGATCCGCAGCAACAGTTACATCAACAA 565
|||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||
Sbjct 409 CCATTGCAATTTGGTAGCCCGCATCAATTTCAGGATCCGCAGCAACAATTACATCAACAA 468
Query 566 GCTATGCAAGGGCACATGGGGATTAGACCAATGGGTTTGAATAATAACAACGGACTGCAA 625
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 469 GCTATGCAAGGGCACATGGGGATCAGACCAATGGGTTTAAATAATAACAACGGACTGCAA 528
Query 626 CATCAAATGCACCACCATGAAACTGCTCTTGCCGCAAACAATGCGGGTCCTAACGATGCT 685
||||||||||||||||| ||||| ||||||| |||||||||||||||| |||||| ||
Sbjct 529 CATCAAATGCACCACCAGGAAACGGCTCTTGGTACAAACAATGCGGGTCCAAACGATACT 588
Query 686 AGTGGAGGAGGTAAACCGGATGGGACCAATATGAGCCAGAGTGGAGCTGATGGGCAAGGT 745
|||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 589 AGTGGAGGAGGTAAACAGGATGGGACCAATATGCTCCAGAGTGGAGCTGATGGGCAAGGT 648
Query 746 GGCTCAGCCGCTAGACATGGCGGTGGTGATGCAAAAACTGAAGGAAAATGA 796
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 GGCTCAGCCGCTAGACATGGCGGTGGTGATGCAAAAACTGAAGGAAAATGA 699
Score = 126 bits (68), Expect = 3e-28
Identities = 80/85 (94%), Gaps = 4/85 (5%)
Strand=Plus/Plus
Query 125 ATGCAGCAATCTCCACAGATGATTCCGATGGTTCTTCCTTCATTTCCGCCC-ACCAATAA 183
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 ATGCAGCAATCTCCACAGATGATTCCGATGGTTCTTCCTTCATTTCCGCCCCACCAATA- 59
Query 184 TATCACCACCGAACAGATCCAAAAG 208
| ||| ||||||||||||||||||
Sbjct 60 T--CACTACCGAACAGATCCAAAAG 82
> Ahg918854 jgi|Araly1|918854|scaffold_100135.1
Length=754
Score = 377 bits (204), Expect = 7e-104
Identities = 416/512 (81%), Gaps = 40/512 (8%)
Strand=Plus/Plus
Query 122 AAGATGCAGCAATCTCCACAGATGATTCCGATGGTTCTTCCTTC-ATTTCCGCCC-ACCA 179
||||||||||| ||||| || ||| ||||||||| ||||||| | |||| ||| || |
Sbjct 20 AAGATGCAGCAGTCTCCGCAAATGTTTCCGATGG---TTCCTTCGA-TTCC-CCCTACTA 74
Query 180 ATAATATCACCACCGAACAGATCCAAAAGTATCTTGATGAGAACAAGAAGCTGATAATGG 239
| || ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 75 ACAACATCACTACCGAACAGATCCAAAAGTACCTTGATGAGAACAAGAAGCTGATAATGG 134
Query 240 CGATCTTGGAAAATCAGAACCTCGGTAAACTTGCAGAATGTGCTCAGTATCAAGCTCTTC 299
| ||| ||||||| ||||| ||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 135 CCATCATGGAAAACCAGAATCTCGGAAAACTTGCAGAATGTGCCCAGTACCAAGCTCTTC 194
Query 300 TCCAGAAGAATTTGATGTATCTCGCTGCAATTGCGGATGCTCAACCTC-AGC-C--AC-C 354
|||||||||| ||||||||||| ||||||||||| ||||||||||| | | | | || |
Sbjct 195 TCCAGAAGAACTTGATGTATCTTGCTGCAATTGCTGATGCTCAACCCCCACCACCTACAC 254
Query 355 A-GCAGCTACACTAACATCAGGAGCCATGACTCCCCAAGCAATGGCTCCTAATCCGTCAT 413
| | |||| ||| | | || ||| ||| || |||| | | || | | | ||| |||
Sbjct 255 AAGGAGCTGCACCATC-TCC--AGCTATGGCTTCCCA-G-A-TGACAAC-A--CCG-CAT 304
Query 414 CAATGC-A-GCCACCACCAAGCTACTTCATGCAGCAAC-ATCAAGCTGTG-GGAATGGCT 469
| || | || |||||| |||||||||||||| || | | |||||| | ||||||| |
Sbjct 305 CC-TGGGATGCAACCACCTAGCTACTTCATGCAACACCCA-CAAGCT-TCAGGAATGGGT 361
Query 470 CAACAA--AT-ACCTC-CTGGGATTTTCCCTCCTA-GAGGTCCATTGCAATTTGGTAGCC 524
|||||| || ||| | | ||| |||||||||| | ||||||| || || ||||||||||
Sbjct 362 CAACAAGCATCACC-CGCAGGGCTTTTCCCTCC-ACGAGGTCCTTTACAGTTTGGTAGCC 419
Query 525 CGCATCAGTTTCTGGATCCGCAGCA--A-CAGTTACATCAACAAGCTATGCAAGGGCACA 581
| || ||| ||| ||||||||| || | ||| ||||||| |||||||||||||| ||||
Sbjct 420 CACACCAGCTTCAGGATCCGCAACAGCAGCAGATACATCAGCAAGCTATGCAAGGACACA 479
Query 582 TGGGGATTAGACCAATGGGTTTGAATAATAAC 613
|||||||||||||||||||| |||| || |||
Sbjct 480 TGGGGATTAGACCAATGGGTATGAACAACAAC 511
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39533464929
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5