BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00860.1
Length=596
Score E
Sequences producing significant alignments: (Bits) Value
Ahg895935 jgi|Araly1|895935|Al_scaffold_0006_3931 372 2e-102
> Ahg895935 jgi|Araly1|895935|Al_scaffold_0006_3931
Length=243
Score = 372 bits (201), Expect = 2e-102
Identities = 230/244 (94%), Gaps = 2/244 (1%)
Strand=Plus/Plus
Query 121 ATGTCGAGAGCTACATACATTATCGGTGCCCTTGCGGGATCTGCGGTAGTAGCTTACGTG 180
||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCAAGATCTACATACATAATCGGTGCCCTTGCGGGATCTGCGGTAGTAGCTTACGTG 60
Query 181 TGTGACAAAGTTATTTCTGATGATAAGCTTTTTGGAGGTACTACACCAGGAACTATTACT 240
||||||||||||||||||||| |||||||||| |||||||||||||| |||||| || ||
Sbjct 61 TGTGACAAAGTTATTTCTGATAATAAGCTTTTCGGAGGTACTACACCTGGAACTGTTTCT 120
Query 241 AACAAGGAATGG-GGTGCTGCGACTGAAGAGAGATTACAAGCATGGCCAAGAGTTGCTGG 299
|||||||||||| || |||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 121 AACAAGGAATGGTGG-GCTGCGACTGAAGAGAAATTCCAAGCATGGCCAAGAGTTGCTGG 179
Query 300 TCCTCCCGTCGTCATGAACCCTATCAGTCGCCAGAATTTCATCGTCAAGTCACGTCCTGA 359
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TCCTCCTGTCGTGATGAACCCTATCAGTCGCCAGAATTTCATCGTCAAGTCACGTCCTGA 239
Query 360 ATAA 363
||||
Sbjct 240 ATAA 243
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21824996908
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5