BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00870.1
Length=1385
Score E
Sequences producing significant alignments: (Bits) Value
Ahg895934 jgi|Araly1|895934|Al_scaffold_0006_3930 1845 0.0
> Ahg895934 jgi|Araly1|895934|Al_scaffold_0006_3930
Length=1287
Score = 1845 bits (999), Expect = 0.0
Identities = 1186/1275 (93%), Gaps = 17/1275 (1%)
Strand=Plus/Plus
Query 53 ATGTATAATCTCACTTTCTCTCCATCATTGTCCTCTTCTTTGCTCTCTTTTACACAACAA 112
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1 ATGTATAATCTCACTTTCTCTCCATCATTGTCCTCTTCTCCGCTCTCTTTTACACAACAA 60
Query 113 ACTCCTGCAGCCATAGTGTCCTCTTCTCCTCCGGATTTAGTACTTCAACAAAAACTCCGG 172
||| | |||||||||||||||||||||| ||||| ||| |||||||||||||||||||
Sbjct 61 ACT-C--CAGCCATAGTGTCCTCTTCTCCGGCGGATCTAGCACTTCAACAAAAACTCCGG 117
Query 173 TTTGTCGTGGAAACCTCACCGGACCGATGGGCTTATGTCATTTTTTGGCAAAAGATGTTT 232
||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||
Sbjct 118 TTTGTCGTGGAAACCTCACCGGACCGATGGGCTTACATCATTTTCTGGCACAAGATGTTT 177
Query 233 GATGATCAATCGGACCGGTCTTACTTGGTTTGGGTTGATGGTCATTTCTGTGGAAACAAG 292
||||| | |||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 178 GATGAACCATCGAACCGGTCTTACTTGGTTTGGGTTGACGGTCATTTCTGTGGAAACAAG 237
Query 293 AACAACAATTCCCAAGAAAATTATACAACAAACAGCATCGAGTGTGAGCTGATGATGGAC 352
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 238 AACAACAAATCCCAAGAAAATTATACAACTAACAGCATCGAGTGTGAGCTGATGATGGAC 297
Query 353 GGTGGAGATGATCTGGAGTTGTTCTATGCCGCATCGTTTTACGGTGAAGATAGATCGCCG 412
|||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct 298 GGTGGAGATGATCTGGAGTTGTTCTATGCCACATCGTTTTACAGTGAAGATGGATCGCCG 357
Query 413 AGAAAGGAAGTATCCGATGAATCTTTGGTTTGGTTAACCGGTCCCGACGAGCTCCGGTTT 472
||||||||| ||| ||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 358 AGAAAGGAAATATTCGATGAATCTTTGGTTTGGCTAACCGGTCTCGACGAGCTCCGGTTT 417
Query 473 AGCAACTACGAGAGGGCTAAAGAAGCCGGTTTTCACGGGGTACACACATTGGTCTCCATA 532
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 418 AGCAACTACGAGAGGGCTAAAGAAGCCGGTTTTCACGGGGCACACACATTGGTCTCCATA 477
Query 533 CCCATCAACAATGGCATTATCGAACTTGGTTCGTCTGAATCAATTATACAAAACCGGAAC 592
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 478 CCCATCAACGATGGCATTATCGAACTTGGTTCGTCTGATTCAATTATACAAAACCGGAAC 537
Query 593 TTTATAAACCGAGTCAAGTCCATATTCGGGTCGGGTAAAACAACAAAACACACTAACCAA 652
||||||||||| ||| |||| ||||| |||||||||||||| || ||||||||||||||
Sbjct 538 TTTATAAACCGGGTCCAGTCGATATTTGGGTCGGGTAAAACCCCAGAACACACTAACCAA 597
Query 653 ACCGGTTCTTACCCTAAACCGGCGGTATCAGATCATTCGA-AAAGCGGAAATCAGCAATT 711
||||||||| | || || ||||||| ||||||||| || | ||| |||||||| |||| |
Sbjct 598 ACCGGTTCTGATCCGAAGCCGGCGGAATCAGATCACTC-AGAAATCGGAAATCGGCAA-T 655
Query 712 CGGG-TCGGAAAGAAAACGGAGGAGGAAACTTGAGACGA-CAAGGGTAGCTGCGGCGACG 769
|||| |||||||||||||||||||||||||||||||||| || ||||||| |||| ||
Sbjct 656 CGGGATCGGAAAGAAAACGGAGGAGGAAACTTGAGACGATGAA-TGTAGCTGTGGCGGCG 714
Query 770 AAAGAGAAACATCATCCGGCGGTTTTGTCCCACGTGGAAGCGGAGAAGCAACGGAGAGAG 829
||||||||||||||||| ||||||||||||| ||||| ||||||| ||||||| |||||
Sbjct 715 GAAGAGAAACATCATCCGCCGGTTTTGTCCCATGTGGAGGCGGAGAGGCAACGGCGAGAG 774
Query 830 AAGCTAAACCACCGGTTTTACGCTCTACGTGCCATCGTACCAAAAGTGTCACGAATGGAC 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 AAGCTAAACCACCGGTTTTACGCTCTACGTGCCATCGTACCAAAAGTGTCACGAATGGAC 834
Query 890 AAAGCGTCACTTTTATCCGACGCAGTTTCGTACATAGAAAGTCTTAAATCCAAAATCGAT 949
||||||||||| |||||||| || ||||||||||| ||||||||||||||||||||||||
Sbjct 835 AAAGCGTCACTCTTATCCGATGCCGTTTCGTACATCGAAAGTCTTAAATCCAAAATCGAT 894
Query 950 GATCTCGAAACTGAGATCAAGAAAATGA--A-GA---TGACGGAGACAGATAAATTAGAC 1003
|||||||||||||||||||||||| ||| | || ||||| |||||||||||||||||
Sbjct 895 GATCTCGAAACTGAGATCAAGAAATTGAGGACGACGATGACGAAGACAGATAAATTAGAC 954
Query 1004 AACAGCAGCAGCAATACGTCTCCGTCTTCCGTTGAGTACCAAGTTAACCAGAAACCTTCA 1063
|| | |||||||||||||||||||| |||||||||||||||| | |||||||||||||||
Sbjct 955 AATAACAGCAGCAATACGTCTCCGTTTTCCGTTGAGTACCAAATCAACCAGAAACCTTCA 1014
Query 1064 AAATCAAACAGAGGCTCTGACTTGGAAGTGCAAGTGAAGATCGTCGGAGAAGAAGCCATA 1123
|||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1015 GAATCAAACAGAGTCTCTGACTTGGAAGTGCAAGTGAAGATCGTCGGAGACGAAGCCATA 1074
Query 1124 ATTAGGGTTCAGACAGAGAATGTGAACCATCCTACGTCGGCATTGATGAGTGCGTTAATG 1183
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1075 ATTAGGGTTCAGACAGAGAATGTGAACCATCCAACGTCGGCATTGATGAGTGCGTTAATG 1134
Query 1184 GAAATGGATTGTCGTGTACAACACGCGAACGCGTCGCGCTTGAGTCAGGTTATGGTTCAA 1243
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1135 GAAATGGATTGCCGTGTACAACACGCGAATGCGTCGCGCTTGAGTCAGGTTATGGTTCAA 1194
Query 1244 GATGTTGTTGTTTTGGTTCCAGAAGGATTAAGATCGGAAGATAGGCTTAGGACCACACTT 1303
|||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 1195 GATGTTGTCGTTTTGGTTCCAGAAGGATTAAGATCCGAAGATGGGCTTAGGACCACACTT 1254
Query 1304 GTCC-GAACCCTAAG 1317
||| ||| ||||||
Sbjct 1255 -TCCCGAAACCTAAG 1268
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51764642955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5