BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00872.1
Length=495
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943664 jgi|Araly1|943664|scaffold_604208.1 654 0.0
Ahg924149 jgi|Araly1|924149|scaffold_105430.1 180 1e-44
> Ahg943664 jgi|Araly1|943664|scaffold_604208.1
Length=559
Score = 654 bits (354), Expect = 0.0
Identities = 469/520 (90%), Gaps = 26/520 (5%)
Strand=Plus/Plus
Query 1 ATGAAAACGATGATCAAGTTTCTGCTGTTAATAC---TGGTGATCTCTCCTATGTCGATA 57
||||| | |||||||||||||||||| |||| || ||||||||||||| || ||||||
Sbjct 21 ATGAAGAGGATGATCAAGTTTCTGCTATTAACACTTGTGGTGATCTCTCCCATATCGATA 80
Query 58 TGCGCCGAGAAGGACATGATGATAAATGAATGCCACAATGCAGACGTCCCAGCCATATGC 117
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 TGCGCCGAGAAGGACCTGATGATAAATGAATGCCACAATGCAGACGTCCCAGCCATATGC 140
Query 118 ATGCAATGTCTTGAATCCGACCCAAACTCCATTCACGCCGACCATATAGGCATAGCTGGC 177
||||||||||||||||||||||||| ||||||||| ||| ||||| |||||||||||| |
Sbjct 141 ATGCAATGTCTTGAATCCGACCCAACCTCCATTCATGCCAACCATTTAGGCATAGCTGCC 200
Query 178 ATCGTCATAAACTGTCTTGAATCCCACCTCCATATCAT------C-AC----C--A---A 221
||||||||||||||||| |||||||||||||||||||| | || | | |
Sbjct 201 ATCGTCATAAACTGTCTCGAATCCCACCTCCATATCATCACCAACAACATAACAAATCTA 260
Query 222 --G-C-AA-AAAGATAAAGGTGAAGTGAAAACAGCTCTGGAGATTTGCAAAAAAGACTTG 276
| | || ||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 261 TCGTCAAAGAAAGATAAAGGTGAAGTGAAAACAGCTCTGGAGGCTTGCAAAAAGGACTTG 320
Query 277 TCGACGAATGCATCTACAATACTGTCGGAAGCCAAAACAAGTTTGAAAACCGGTGATTAT 336
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 321 TCGACGAATGCAGCTACAATACTGTCGGAAGCCAAAACAAGTCTGAAAACCGGTGATTAC 380
Query 337 GATAAAACCAACAAATCGATAAAGCTTGCGCTTGGCTTTCCTCTGAGATGTATG-TTCAA 395
|||||||||||| ||||||||||||||||||||||||||| ||| ||||| | |||||
Sbjct 381 GATAAAACCAACCGATCGATAAAGCTTGCGCTTGGCTTTCCCCTGGGATGT-CGATTCAA 439
Query 396 TCTCAAACGTGTCAAGTTCACGTCTCCCCAACTATTTAGTCAAATCAATATCTATGCTCA 455
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 TCTCAAAAGTGTCAAGTTCACGTCTCCCCAACTATTTAGTCAAATCAATATCTATGCTCA 499
Query 456 ACTCTCTGACGCTGCTATGAGGATCATTGATCGCTTCTAA 495
||||||||||||||||||||||||||||||||||||||||
Sbjct 500 ACTCTCTGACGCTGCTATGAGGATCATTGATCGCTTCTAA 539
> Ahg924149 jgi|Araly1|924149|scaffold_105430.1
Length=500
Score = 180 bits (97), Expect = 1e-44
Identities = 170/204 (83%), Gaps = 10/204 (5%)
Strand=Plus/Plus
Query 297 ACTGTCGGAAGCCAAAACAAG-TTTGAAAACCGGTGATTATGATAAAACCAACAAATCGA 355
||||||||||||| |||| || | ||| |||||||||||| || |||||| ||||||||
Sbjct 281 ACTGTCGGAAGCCGAAAC-AGCTCTGACAACCGGTGATTACGACAAAACCGCCAAATCGA 339
Query 356 TAAAGCTTGCGCTTGGCTTTCCTC-TGAGATGTATG-TTCAATCT-CAAACGTGTCAAG- 411
||||||||||||||||| | |||| || | ||| | ||| | || |||| | |||||
Sbjct 340 TAAAGCTTGCGCTTGGCATCCCTCATG-GCTGT-CGTTTCGAGCTACAAA-GAATCAAGT 396
Query 412 TTCACGTCTCCCCAACTATTTAGTCAAATCAATATCTATGCTCAACTCTCTGACGCTGCT 471
|| | |||| | | |||| ||| ||||||||||||||| ||||||||||||| ||||||
Sbjct 397 TTGA-GTCTTTCGAGCTATATAGCCAAATCAATATCTATACTCAACTCTCTGATGCTGCT 455
Query 472 ATGAGGATCATTGATCGCTTCTAA 495
||||||||||||||||||||||||
Sbjct 456 ATGAGGATCATTGATCGCTTCTAA 479
Score = 165 bits (89), Expect = 3e-40
Identities = 179/221 (81%), Gaps = 11/221 (5%)
Strand=Plus/Plus
Query 9 GATGATCAAGTTTCTGCTGTTAA---TACTGGTGATCTCTCCTATGTCGATATGCGCCGA 65
||||||||||| ||| || |||| | || ||||||||| | |||| ||||| ||
Sbjct 29 GATGATCAAGTATCTCCTTTTAACTCTTCTCGTGATCTCT-C-----CGATTTGCGCTGA 82
Query 66 GAAGGACATGATGATAAATGAATGCCACAATGCAGACGTCCCAG-CCATATGCATGCAAT 124
||||||| |||||||||| |||||| ||||||| | ||||| | |||| ||||||||||
Sbjct 83 GAAGGACCTGATGATAAAGGAATGCAACAATGCCCAAGTCCC-GACCATTTGCATGCAAT 141
Query 125 GTCTTGAATCCGACCCAAACTCCATTCACGCCGACCATATAGGCATAGCTGGCATCGTCA 184
|||||||||||||||||| |||| |||| || |||| | | ||||| || | ||| |||
Sbjct 142 GTCTTGAATCCGACCCAACCTCCGTTCATGCTGACCGTGTTGGCATCGCCGATATCATCA 201
Query 185 TAAACTGTCTTGAATCCCACCTCCATATCATCACCAAGCAA 225
|| ||||||| || || | ||||||||||||||||||||||
Sbjct 202 TACACTGTCTCGACTCTCGCCTCCATATCATCACCAAGCAA 242
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17971282419
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5