BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G00880.1

Length=902
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg943663 jgi|Araly1|943663|scaffold_604207.1                        641    0.0  


> Ahg943663 jgi|Araly1|943663|scaffold_604207.1
Length=409

 Score =  641 bits (347),  Expect = 0.0
 Identities = 372/384 (97%), Gaps = 2/384 (1%)
 Strand=Plus/Plus

Query  202  ATATTATCGGCCCATGGGTAACGGAGACAAAGTCATGAGCCACTGGAGCTTCCACATCCC  261
            ||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  8    ATATTATTGTCCAATGGGTAACGGAGACAAAGTCATGAGCCACTGGAGCTTCCACATCCC  67

Query  262  ACGTCTCCATCATCATGAGCATGATCATGAAAAGGTACCAAAAGGGTGTTTGGCAGTGAA  321
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  68   ACGTCTCCATCATCATGAACATGATCATGAAAAGGTACCAAAAGGGTGTTTGGCAGTGAA  127

Query  322  GGTAGGACAAGGAGAAGAGCAAGAGAGATTTGTGATTCCCGTTATGTACTTTAATCATCC  381
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  128  GGTAGGACAAGGAGAAGAGCAAGAGAGATTTGTGATTCCCGTTATGTACTTTAATCATCC  187

Query  382  TTTGTTTG-GACAACTCTTGAAGGAAGCTGAAGAAGAGTTTGGTTTTGCTCAAAAAGGGA  440
            |||||||  | |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  188  TTTGTTTATG-CAACTCTTGAAGGAAGCTGAAGAAGAGTTTGGTTTTTCTCAAAAAGGGA  246

Query  441  CAATCACGATCCCTTGTCACGTTGAGGAGTTTAGGTATGTTCAAGGATTGATCGATCGAG  500
            ||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||
Sbjct  247  CAATCACGATCCCTTGTCACGTTGAGGAGTTTAGGTACGTTCGAGGATTGATTGATCGAG  306

Query  501  AAAACACTAGATTTCTCGGTACTAATCTCCTTGATCATCACCATCATCATCACAACCATC  560
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  307  AAAACACTAGATTTCTCGGTAATAATCTCCTTGATCATCACCATCATCATCACAACCATC  366

Query  561  TCATCCGGTGTTTTAGGGTTTGAT  584
            ||||||||||||||||||||||||
Sbjct  367  TCATCCGGTGTTTTAGGGTTTGAT  390



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33433798209


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5